View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5939_high_20 (Length: 375)
Name: NF5939_high_20
Description: NF5939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5939_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 8 - 358
Target Start/End: Original strand, 39275153 - 39275508
Alignment:
| Q |
8 |
taatcatatcatatatataaaggttcatatattccatagcttcagaatgagttacagataacattgatcatatatatgaagcaccatttataatcagggc |
107 |
Q |
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| T |
39275153 |
taatcataacatatatataaaagtccatatatttcatagcttcagaatgagttacagataacattgatcatatataggaagcaccatttataatcagggc |
39275252 |
T |
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| Q |
108 |
aacttattaaaatatgaaaacagcaaacaaagcacacaatttattgatactcgat-----ccagaggtagtaacggtaaccaagcaagcatgcgcatatt |
202 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| || |
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| T |
39275253 |
aaattattaaaatatgaaaacagcaaacaaagcacacaatttattgatactcgatccgatccagaggtagtaacagtaaccaagcaagcatgcgcatgtt |
39275352 |
T |
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| Q |
203 |
agacccccttgagtgtccaattgactttgtgacttccatgaccatgaccataaccatgaggcttaatcctgttgttattattgtatccatatggattagc |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39275353 |
agacccccttgagtgtccaattgactttgtgacttccatgaccatgaccatgaccatgaggcttaatcctgttgttattattgtatccatatggattagc |
39275452 |
T |
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| Q |
303 |
atagtgaacatctcctccatatgttccatgacgctcatatctcatctcatccatct |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39275453 |
atagtgaacatctcctccatatgttccatgacgctcatatctcatctcatccatct |
39275508 |
T |
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