View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5939_high_21 (Length: 374)

Name: NF5939_high_21
Description: NF5939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5939_high_21
NF5939_high_21
[»] chr1 (2 HSPs)
chr1 (202-355)||(29684345-29684498)
chr1 (53-153)||(29684173-29684272)
[»] chr5 (7 HSPs)
chr5 (205-355)||(22913663-22913813)
chr5 (202-317)||(8344750-8344865)
chr5 (202-317)||(42824776-42824891)
chr5 (55-149)||(22913434-22913529)
chr5 (97-149)||(8344607-8344659)
chr5 (97-149)||(42824982-42825034)
chr5 (55-86)||(22914271-22914302)
[»] scaffold0075 (3 HSPs)
scaffold0075 (57-149)||(5834-5926)
scaffold0075 (203-273)||(10369-10440)
scaffold0075 (55-86)||(10513-10544)
[»] chr7 (4 HSPs)
chr7 (97-149)||(25717360-25717412)
chr7 (54-149)||(19049114-19049209)
chr7 (205-249)||(49018642-49018686)
chr7 (312-355)||(25717522-25717565)
[»] scaffold0903 (1 HSPs)
scaffold0903 (97-149)||(91-143)
[»] chr3 (2 HSPs)
chr3 (97-149)||(30759545-30759596)
chr3 (202-234)||(41047413-41047445)


Alignment Details
Target: chr1 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 202 - 355
Target Start/End: Original strand, 29684345 - 29684498
Alignment:
Q  202 tctcactattcatcatcttctccaaatctttctcccttttcactcaaaattaccaacatgcaaggctacagtcatgacttaattgctatctcatacttcc 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29684345 tctcactattcatcatcttctccaaatctttctcccttttcactcaaaattaccaacatgcaaagctacagtcatgacttaattgctatctcatacttcc 29684444  T
Q  302 aggaagctccattttctgaaataggtaagtagctgaactcaaccacaagctcac 355  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29684445 aggaagctccattttctgaaattggtaagtagctgaactcaaccacaagctcac 29684498  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 53 - 153
Target Start/End: Original strand, 29684173 - 29684272
Alignment:
Q  53 tttctactatactatttagaaaaatcaatgtctgnnnnnnnnatcattttacccttattaggggtattttagtaaattagtaattggagaatgttatctt 152  Q
    |||||||||||||||||||||||||||||| ||         | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29684173 tttctactatactatttagaaaaatcaatg-cttgtttttttaccattttacccttattaagggtattttagtaaattagtaattggagaatgttatctt 29684271  T

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Target: chr5 (Bit Score: 123; Significance: 4e-63; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 205 - 355
Target Start/End: Original strand, 22913663 - 22913813
Alignment:
Q  205 cactattcatcatcttctccaaatctttctcccttttcactcaaaattaccaacatgcaaggctacagtcatgacttaattgctatctcatacttccagg 304  Q
    ||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  22913663 cactattcaccatcttctccaaatatttctccattttcactcaaaattaccaacatgcaaggctacagtcatgacttaactgctatctcatacttccagc 22913762  T
Q  305 aagctccattttctgaaataggtaagtagctgaactcaaccacaagctcac 355  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  22913763 aagctccattttcttaaattggtaagtagctgaactcaaccacaagctcac 22913813  T

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Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 202 - 317
Target Start/End: Original strand, 8344750 - 8344865
Alignment:
Q  202 tctcactattcatcatcttctccaaatctttctcccttttcactcaaaattaccaacatgcaaggctacagtcatgacttaattgctatctcatacttcc 301  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8344750 tctcactattcaccatcttctccaaatgtttctcccttttcactcaaaattaccaacatgcaaggctacagtcatgacttaattgttatctcatacttcc 8344849  T
Q  302 aggaagctccattttc 317  Q
    || |||||||||||||    
T  8344850 agcaagctccattttc 8344865  T

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Target: chr5; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 202 - 317
Target Start/End: Complemental strand, 42824891 - 42824776
Alignment:
Q  202 tctcactattcatcatcttctccaaatctttctcccttttcactcaaaattaccaacatgcaaggctacagtcatgacttaattgctatctcatacttcc 301  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42824891 tctcactattcaccatcttctccaaatgtttctcccttttcactcaaaattaccaacatgcaaggctacagtcatgacttaattgttatctcatacttcc 42824792  T
Q  302 aggaagctccattttc 317  Q
    || |||||| ||||||    
T  42824791 agcaagctcaattttc 42824776  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 22913434 - 22913529
Alignment:
Q  55 tctactatactatttagaaaaatcaatgtctgnnnnnnnnatca-ttttacccttattaggggtattttagtaaattagtaattggagaatgttat 149  Q
    ||||||||||||||||||||||||||||||||          || ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22913434 tctactatactatttagaaaaatcaatgtctgtttttttttacaattttacccttattagggatattttagtaaattagtaattggagaatgttat 22913529  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 8344607 - 8344659
Alignment:
Q  97 cattttacccttattaggggtattttagtaaattagtaattggagaatgttat 149  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  8344607 cattttacccttattaggggtatttcagtaaattggtaattggagaatgttat 8344659  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 42825034 - 42824982
Alignment:
Q  97 cattttacccttattaggggtattttagtaaattagtaattggagaatgttat 149  Q
    |||||| |||||||||||||||||| |||||||| ||||||||| ||||||||    
T  42825034 cattttgcccttattaggggtatttcagtaaattggtaattggataatgttat 42824982  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 86
Target Start/End: Complemental strand, 22914302 - 22914271
Alignment:
Q  55 tctactatactatttagaaaaatcaatgtctg 86  Q
    ||||||||||||||||||||||||||||||||    
T  22914302 tctactatactatttagaaaaatcaatgtctg 22914271  T

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Target: scaffold0075 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 57 - 149
Target Start/End: Complemental strand, 5926 - 5834
Alignment:
Q  57 tactatactatttagaaaaatcaatgtctgnnnnnnnnatcattttacccttattaggggtattttagtaaattagtaattggagaatgttat 149  Q
    ||||||||||||||||||||||||||||||        | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5926 tactatactatttagaaaaatcaatgtctgtttcttttaccattttacccttattaggggtattttagtaaattagtaattggagaatgttat 5834  T

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Target: scaffold0075; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 203 - 273
Target Start/End: Complemental strand, 10440 - 10369
Alignment:
Q  203 ctcactattcatc-atcttctccaaatctttctcccttttcactcaaaattaccaacatgcaaggctacagt 273  Q
    ||||||||||| | ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  10440 ctcactattcacccatcttctccaaatatttctccattttcactcaaaattaccaacatgcaaggctacagt 10369  T

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Target: scaffold0075; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 86
Target Start/End: Complemental strand, 10544 - 10513
Alignment:
Q  55 tctactatactatttagaaaaatcaatgtctg 86  Q
    ||||||||||||||||||||||||||||||||    
T  10544 tctactatactatttagaaaaatcaatgtctg 10513  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 25717360 - 25717412
Alignment:
Q  97 cattttacccttattaggggtattttagtaaattagtaattggagaatgttat 149  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  25717360 cattttacccttattaggggtattttagtaaattagcaattgaagaatgttat 25717412  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 19049114 - 19049209
Alignment:
Q  54 ttctactatactatttagaaaaatcaatgtctgnnnnnnnnatcattttacccttattaggggtattttagtaaattagtaattggagaatgttat 149  Q
    |||||||||||||||||||||||| |||||||         | |||||| ||||||||||||||||||||||||||||  ||||||||| ||||||    
T  19049114 ttctactatactatttagaaaaattaatgtctatttcttttaccattttgcccttattaggggtattttagtaaattacaaattggagagtgttat 19049209  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 49018642 - 49018686
Alignment:
Q  205 cactattcatcatcttctccaaatctttctcccttttcactcaaa 249  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  49018642 cactattcaccatcttctccaaatctttctcccttttcactcaaa 49018686  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 312 - 355
Target Start/End: Original strand, 25717522 - 25717565
Alignment:
Q  312 attttctgaaataggtaagtagctgaactcaaccacaagctcac 355  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  25717522 attttctgaaattggtaagtagctgaactcaaccacaagctcac 25717565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0903 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0903
Description:

Target: scaffold0903; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 143 - 91
Alignment:
Q  97 cattttacccttattaggggtattttagtaaattagtaattggagaatgttat 149  Q
    |||||| |||||||||||||||||| |||||||| ||||||||||||||||||    
T  143 cattttgcccttattaggggtatttcagtaaattggtaattggagaatgttat 91  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 30759545 - 30759596
Alignment:
Q  97 cattttacccttattaggggtattttagtaaattagtaattggagaatgttat 149  Q
    |||||| ||||||||| ||||||||||||||||| ||||||||| ||||||||    
T  30759545 cattttgcccttattaagggtattttagtaaatt-gtaattggataatgttat 30759596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 41047413 - 41047445
Alignment:
Q  202 tctcactattcatcatcttctccaaatctttct 234  Q
    |||||||||||||||||||||||||||||||||    
T  41047413 tctcactattcatcatcttctccaaatctttct 41047445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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