View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5939_high_24 (Length: 344)

Name: NF5939_high_24
Description: NF5939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5939_high_24
NF5939_high_24
[»] chr4 (1 HSPs)
chr4 (10-344)||(53675958-53676299)


Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 10 - 344
Target Start/End: Original strand, 53675958 - 53676299
Alignment:
Q  10 agcaaaggtggtgggcatgtatatcattttatcttgtcttgttatataagccaaaaatgaacctcctttttacaaaattttgtgcctttattatttttag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53675958 agcaaaggtggtgggcatgtatatcattttatcttgtcttgttatataagccaaaaatgaacctcctttttacaaaattttgtgcctttattatttttag 53676057  T
Q  110 tttt---------acttccagttggtaggaaagcttgttggactatttgcaattcttgnnnnnnntagttacagtcatcactttatcatcaatgaaactt 200  Q
    ||||         |||||||||||||||||||||||||||||||||||||||||||||       |||||||| ||||||||||||||||||||||||||    
T  53676058 tttttttttttttacttccagttggtaggaaagcttgttggactatttgcaattcttgaaaaaaatagttacattcatcactttatcatcaatgaaactt 53676157  T
Q  201 tgagaggacactaactgttttctctttttctgatggatgataaagtggaaaatatttctgtctctaactaccaaaccttgcaaggttgccacatagcctt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||    
T  53676158 tgagaggacactaactgttttctctttttctgatggatgataaagtggaaaatatttctgtctctaa--atcaaaccttgcaaggttgccacatagcctt 53676255  T
Q  301 cattatttttgacatacacaacagcattagaggttttattttgt 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  53676256 cattatttttgacatacacaacagcattagaggttttattttgt 53676299  T

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