View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5939_high_25 (Length: 267)
Name: NF5939_high_25
Description: NF5939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5939_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 4247328 - 4247501
Alignment:
| Q |
1 |
agagcaagtatggaaggattgcaaatttctcaagatattttcttttggtggattgaatattcattagtgaaaaaactattaatgaataaatcaaataatt |
100 |
Q |
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| T |
4247328 |
agagcaagtatggaaggattgcaaatttctcaacatattttcttttggtggattgaatattcattagtgaaaaaactattaatgaataaatcaaataatt |
4247427 |
T |
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| Q |
101 |
tatattaatggatgattaaccaattgaactttaatgaacttctaatggattataaatggattaattaattgtat |
174 |
Q |
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| T |
4247428 |
tatattaatggatgattaaccaattgaactttaatgaacttctaatggattataaatggattaattaattgtat |
4247501 |
T |
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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 4247499 - 4247539
Alignment:
| Q |
206 |
tatcaaaccaatctatttgcaaaatctagtggagtttatag |
246 |
Q |
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| T |
4247499 |
tatcaaaccaatctatttgcaaaatctagtggagtttatag |
4247539 |
T |
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