View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5939_high_29 (Length: 246)

Name: NF5939_high_29
Description: NF5939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5939_high_29
NF5939_high_29
[»] chr3 (4 HSPs)
chr3 (1-174)||(42957118-42957291)
chr3 (173-230)||(42957322-42957379)
chr3 (109-174)||(2230144-2230209)
chr3 (108-168)||(39439907-39439972)
[»] scaffold0110 (1 HSPs)
scaffold0110 (108-174)||(38614-38680)
[»] chr2 (3 HSPs)
chr2 (108-174)||(44246353-44246419)
chr2 (128-176)||(7444716-7444764)
chr2 (128-168)||(10354297-10354337)
[»] chr8 (1 HSPs)
chr8 (128-176)||(30800224-30800272)
[»] chr4 (4 HSPs)
chr4 (108-174)||(3121245-3121316)
chr4 (128-175)||(46944088-46944135)
chr4 (128-174)||(22405078-22405124)
chr4 (108-168)||(4292687-4292752)
[»] chr1 (2 HSPs)
chr1 (128-174)||(42365924-42365970)
chr1 (128-168)||(48046440-48046480)
[»] chr5 (1 HSPs)
chr5 (108-168)||(11617251-11617316)
[»] chr7 (1 HSPs)
chr7 (128-176)||(36657641-36657689)


Alignment Details
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 42957118 - 42957291
Alignment:
Q  1 aagctatacatgtctattagatcgcattcgaagaatcatgcagtctttgaagagtctatagtgttgtgtttcttttgaaagaataaagggaaagacagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42957118 aagctatacatgtctattagatcgcattcgaagaatcatgcagtctttgaagagtctatagtgttgtgtttcttttgaatgaataaagggaaagacagaa 42957217  T
Q  101 tttcatcgtttggttttgcaaaaaagaaatgaaatggagtgtgatgaaactcattccatccaacaccattcatt 174  Q
    ||||||  |||||||||||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||||||    
T  42957218 tttcattctttggttttgcaaaaatgaaatgaaacggagtatgatgaaactcaatccatccaacaccattcatt 42957291  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 42957322 - 42957379
Alignment:
Q  173 tttatgagatgaaatgaaacatattaataatctaattacatttttatccctgcttttt 230  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42957322 tttatcagatgaaatgaaacatattaataatctaattacatttttatccctgcttttt 42957379  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 2230209 - 2230144
Alignment:
Q  109 tttggttttgcaaaaaagaaatgaaatggagtgtgatgaaactcattccatccaacaccattcatt 174  Q
    |||||||||| ||||||  ||||||||||| ||||||| ||| |||| ||||||| ||||| ||||    
T  2230209 tttggttttgtaaaaaatgaatgaaatggaatgtgatggaacccattgcatccaataccatccatt 2230144  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 39439972 - 39439907
Alignment:
Q  108 gtttggttttgcaaaaaa-----gaaatgaaatggagtgtgatgaaactcattccatccaacacca 168  Q
    ||||||||||||||||||     | |||| |||||||||||||| |||||||||||||||| ||||    
T  39439972 gtttggttttgcaaaaaaagaatggaatggaatggagtgtgatggaactcattccatccaatacca 39439907  T

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Target: scaffold0110 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 174
Target Start/End: Complemental strand, 38680 - 38614
Alignment:
Q  108 gtttggttttgcaaaaaagaaatgaaatggagtgtgatgaaactcattccatccaacaccattcatt 174  Q
    ||||||||||| ||||||| |||| |||||||||||||| ||| |||||||||||| |||| |||||    
T  38680 gtttggttttgtaaaaaaggaatggaatggagtgtgatggaacccattccatccaataccactcatt 38614  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 44246353 - 44246419
Alignment:
Q  108 gtttggttttgcaaaaaagaaatgaaatggagtgtgatgaaactcattccatccaacaccattcatt 174  Q
    ||||||||||| | ||||| |||| |||||||||||||| |||||||||||||||| |||| |||||    
T  44246353 gtttggttttgtataaaaggaatggaatggagtgtgatggaactcattccatccaataccactcatt 44246419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 7444764 - 7444716
Alignment:
Q  128 aatgaaatggagtgtgatgaaactcattccatccaacaccattcattta 176  Q
    |||| |||||||||||||| ||| |||||||||||| |||| |||||||    
T  7444764 aatggaatggagtgtgatggaacccattccatccaataccactcattta 7444716  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 10354297 - 10354337
Alignment:
Q  128 aatgaaatggagtgtgatgaaactcattccatccaacacca 168  Q
    |||| ||||||||| ||||||||||||||||||||| ||||    
T  10354297 aatggaatggagtgcgatgaaactcattccatccaatacca 10354337  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 30800224 - 30800272
Alignment:
Q  128 aatgaaatggagtgtgatgaaactcattccatccaacaccattcattta 176  Q
    |||||||| |||||||||| |||||||||||||||| ||||||||||||    
T  30800224 aatgaaatagagtgtgatggaactcattccatccaataccattcattta 30800272  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 3121245 - 3121316
Alignment:
Q  108 gtttggttttgcaaaaaa-----gaaatgaaatggagtgtgatgaaactcattccatccaacaccattcatt 174  Q
    ||||||||||||||||||     | |||| |||||||||||||| |||||||||||||||| ||||| ||||    
T  3121245 gtttggttttgcaaaaaaagaatggaatggaatggagtgtgatggaactcattccatccaataccatccatt 3121316  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 46944088 - 46944135
Alignment:
Q  128 aatgaaatggagtgtgatgaaactcattccatccaacaccattcattt 175  Q
    |||| |||||||||||||| |||||||||||||||| |||| ||||||    
T  46944088 aatggaatggagtgtgatggaactcattccatccaataccactcattt 46944135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 22405078 - 22405124
Alignment:
Q  128 aatgaaatggagtgtgatgaaactcattccatccaacaccattcatt 174  Q
    |||| |||||||||||||| |||||||||||||||| |||| |||||    
T  22405078 aatggaatggagtgtgatggaactcattccatccaataccaatcatt 22405124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 4292752 - 4292687
Alignment:
Q  108 gtttggttttgcaaaaaagaaatgaaatgga-----gtgtgatgaaactcattccatccaacacca 168  Q
    ||||||||||||||||||| |||| ||||||     |||||||| |||||||||||||||| ||||    
T  4292752 gtttggttttgcaaaaaagtaatggaatggaatggtgtgtgatggaactcattccatccaatacca 4292687  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 42365924 - 42365970
Alignment:
Q  128 aatgaaatggagtgtgatgaaactcattccatccaacaccattcatt 174  Q
    |||| |||||||||||||| ||| |||||||||||| ||||||||||    
T  42365924 aatggaatggagtgtgatggaacccattccatccaataccattcatt 42365970  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 48046440 - 48046480
Alignment:
Q  128 aatgaaatggagtgtgatgaaactcattccatccaacacca 168  Q
    |||| |||||||||||||| |||||||||||||||| ||||    
T  48046440 aatggaatggagtgtgatggaactcattccatccaatacca 48046480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 11617251 - 11617316
Alignment:
Q  108 gtttggttttgcaaaaaa-----gaaatgaaatggagtgtgatgaaactcattccatccaacacca 168  Q
    ||||||||||||||||||     | |||| |||||||||||||| |||||||||||||||| ||||    
T  11617251 gtttggttttgcaaaaaatgaatggaatggaatggagtgtgatggaactcattccatccaatacca 11617316  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 36657689 - 36657641
Alignment:
Q  128 aatgaaatggagtgtgatgaaactcattccatccaacaccattcattta 176  Q
    ||||||| | ||||||||| ||| |||||||||||| ||||||||||||    
T  36657689 aatgaaaagaagtgtgatggaacccattccatccaataccattcattta 36657641  T

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