View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5939_high_3 (Length: 539)
Name: NF5939_high_3
Description: NF5939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5939_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 429; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 11 - 520
Target Start/End: Complemental strand, 10290769 - 10290261
Alignment:
| Q |
11 |
atcatcaagtagaacttgaggcataaaatcctctatcagtttggctaactcatgtacaccatgtataatccaactataatcatgaacagaacaagacaac |
110 |
Q |
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| T |
10290769 |
atcatcaagtagaacttgaggcataaaatcctctatcagtttggctaactcatgtacaccatgtataatccaactataatcatgaacaaaacaagacaac |
10290670 |
T |
|
| Q |
111 |
aacatattgttcctcaaagcgagttgttgtctccaaggaaccttgtaaggtccattgtatgctcatgtatcaagatcaggaacatcatttggaaaggttc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10290669 |
aacatattgttcctcaaagcgagttgttgtctccaaggaaccttgtaaggt-cattgtatgctcatgtatcaagatcaggaacatcatttggaaaggttc |
10290571 |
T |
|
| Q |
211 |
ttctagaggaccaacacattttaaccggggctcatattcggaggaaacttgaagcggttgaaactatgtctcttgatgttnnnnnnnnnnnnnnngagag |
310 |
Q |
| |
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| T |
10290570 |
ttctagaggaccgacacattttaaccggggctcatattcggaggaaacttgaagcggttgaaactatgtctcttgatgttaaaaaacagaaaaaggagag |
10290471 |
T |
|
| Q |
311 |
atttaataatattaaagagaaagtctccaatttgagatccatttttagtttaagaggggagattttcggcaagagatatcaatcaatggtagaatcacat |
410 |
Q |
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| T |
10290470 |
atttaataatattaaagagaaagtctccaatttgagatccagttttgctttaagaggggggattttcggcaagagatatcaatcaatggtagaatcacat |
10290371 |
T |
|
| Q |
411 |
ggcactgaatagtgaataccgtccgacaatgagagacatcaaaatggtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatact |
510 |
Q |
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| T |
10290370 |
ggcactgaatagtgaataccgtccgacaatgagagacatcaaaatgctccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatact |
10290271 |
T |
|
| Q |
511 |
ccctccaatc |
520 |
Q |
| |
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|||||||||| |
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| T |
10290270 |
ccctccaatc |
10290261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 512
Target Start/End: Complemental strand, 10299177 - 10298669
Alignment:
| Q |
11 |
atcatcaagtagaacttgaggcataaaatcctctatcagtttggctaactcatgtacaccatgtataatccaactataatcatgaacagaac-------- |
102 |
Q |
| |
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|||||||||| |||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
10299177 |
atcatcaagtggaacttgaggcacagaatcctctatcagtttagctaactcatgtacaccatgtataatccaactataaccatgaacagatccttcaggc |
10299078 |
T |
|
| Q |
103 |
------aagacaacaacatattgttcctcaaagcgagttgttgtctccaaggaaccttgtaaggtccattgtatgctcatgtatcaagatcaggaacatc |
196 |
Q |
| |
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|| ||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||| || ||||||| ||||| | ||||||||| || |
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| T |
10299077 |
atgatcaaaacagcaacatattgttcctcaaagggagttattgtctccaaggaaccttgtaaggtcc-ttctatgctcctgtatga-gatcaggaaaata |
10298980 |
T |
|
| Q |
197 |
atttggaaaggttcttctagaggaccaacacattttaaccggggctcatattcggaggaaacttgaagcggttgaaactatgtctcttgatgtt--nnnn |
294 |
Q |
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| T |
10298979 |
atttggaaagcttcttctagaggactgacacattttaaccggggctcatattcagaggaaacttgaagtggttgaaactatgtctcttgatgttaaaaaa |
10298880 |
T |
|
| Q |
295 |
nnnnnnnnnnngagagatttaataatattaaagagaaagtctccaatttgagatccatttttagtttaagaggggagattttcggcaagagatatcaatc |
394 |
Q |
| |
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| T |
10298879 |
cagaaaaaagagagagatttaagaatattaaagagaaagtctccaatttgagatacagttttgctttaagaggggggattttcggcaagagatatcaatc |
10298780 |
T |
|
| Q |
395 |
aatggtagaatcacatggcactgaatagtgaataccgtccgacaatgagagacatcaaaatggtccaacagttcttatgaacgacggtggtgagagacat |
494 |
Q |
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| T |
10298779 |
aatggtagaatcacatggcac-------tgaataccgtccgacaatgagagacatcaaaatggtccaacagttcttatgaacgacggtggtgagagacat |
10298687 |
T |
|
| Q |
495 |
gtaagtgcatcatactcc |
512 |
Q |
| |
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|||||||||||||||||| |
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| T |
10298686 |
gtaagtgcatcatactcc |
10298669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 99 - 517
Target Start/End: Original strand, 9746708 - 9747117
Alignment:
| Q |
99 |
gaacaagacaacaacatattgttcctcaaagcgagttgttgtctccaaggaaccttgtaaggtccattgtatgctcatgtatcaagatcaggaacatcat |
198 |
Q |
| |
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||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| ||| |||| ||||| ||||||||||||||||||||| | |
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| T |
9746708 |
gaacaagacaacaacatattgttccaca--gggagttgttgtctccaaggaaccttgtaagatcc-ttgtctgctcctgtatcaagatcaggaacatcgt |
9746804 |
T |
|
| Q |
199 |
ttggaaaggttcttctagaggaccaacacattttaaccggggctcatattcggaggaaacttgaagcggttgaaactatgtctcttgatgttnnnnnnnn |
298 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||| |
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| T |
9746805 |
ttggaaagcttcttctagaggaccggcacattttaaccggggctcatatccggaggaagcttgaagcagttgaaactatgtctcttgatgttaaaaaaca |
9746904 |
T |
|
| Q |
299 |
nnnnnnngagagatttaataatattaaagagaaagtctccaatttgagatccatttttagtttaagaggggagattttcggcaagagatatcaatcaatg |
398 |
Q |
| |
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||||||||||||||||||||||| ||||| ||||||||||||| || |||| | |||||||| |||||| || |||||| ||||||||||| |
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| T |
9746905 |
gaaaaaagagagatttaataatattaaagaaaaagtttccaatttgagatacagttttgctctaagagggaggatttttggtaagagaaatcaatcaatg |
9747004 |
T |
|
| Q |
399 |
gtagaatcacatggcactgaatagtgaataccgtccgacaatgagagacatca-aaatggtccaacagttcttatgaacgacggtggtgagagacatgta |
497 |
Q |
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||||||||||||||||| ||||||||| |||||||||||||| |||| || |||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
9747005 |
gtagaatcacatggcac-------tgaataccgcccgacaatgagagatatcacaagtggtccaacagtccttgtgaacgacggtggtgagagacatgta |
9747097 |
T |
|
| Q |
498 |
agtgcatcatactccctcca |
517 |
Q |
| |
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||| |||||||||||||||| |
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|
| T |
9747098 |
agttcatcatactccctcca |
9747117 |
T |
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