View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5939_high_4 (Length: 522)
Name: NF5939_high_4
Description: NF5939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5939_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 14 - 504
Target Start/End: Original strand, 42967551 - 42968041
Alignment:
| Q |
14 |
aaataaatc-gagtttaagggaacatatgattaattggctttgagaatattactagtctattcttagatcacatttagatcaatttgagttgagggactc |
112 |
Q |
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| T |
42967551 |
aaataaatctgagtttaagggaacatatgattaattggctttgagaatattactagtctattcttagatcacatttagatcaatttgagttgagggactc |
42967650 |
T |
|
| Q |
113 |
ttgaatttctgtgaatttttcaataattacgagagccttgagctttgtatttgacatgtttgggtcataaaagtttatcttacctgtgtgactagagcat |
212 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42967651 |
ttgaatttctgtcaatttttcaataattacgagagccttgagctttgtatttgacatgtttgggtcataaaagtttatcttacctgtgtgactagagcat |
42967750 |
T |
|
| Q |
213 |
agacacacatagaacttgcatgacaagtcatacatacacatatattggcatgtcatacgcagtttttgtgaacgaaacaaactcaacctattgtcaccac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42967751 |
agacacacatagaacttgcatgacaagtcatacatacacatatattggcatgtcatacgcagtttttgtgaacgaaacaaactcaacctattgtcaccac |
42967850 |
T |
|
| Q |
313 |
aagactttattcaaatttattgtgatttttgataagctacaaattgattgtgaattctttactgcaccaatcgaaatgaattataaatagttcaaattca |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||| |
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| T |
42967851 |
aagactttattcaaatttattgtgatttttgataagctacaaattgattgtgaattctttactgcaccaaacgaaatgaattacacatagttcaaattca |
42967950 |
T |
|
| Q |
413 |
attcatttatcttaccaactcaattttcagttcatatttccgtgaatttgatattgttctagtcttatttttatgtctactgaaatcctcaa |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42967951 |
attcatttatcttaccaactcaattttcagttcatattcccgtgaa-ttgatattgttctagtcttatttttatgtctactgaaatcctcaa |
42968041 |
T |
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