View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5939_low_13 (Length: 450)
Name: NF5939_low_13
Description: NF5939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5939_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 12 - 432
Target Start/End: Original strand, 15853966 - 15854384
Alignment:
| Q |
12 |
atgaacacattgacatatcacttaaaatttgtaaataataatattttactttattttcagttcacacacatgcaacnnnnnnnctctgtagcatatacat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
15853966 |
atgaacacattgacatatcacttaaaatttgtaaataataatattttactttattttcagttcacaca--tgcaactttttttctctgtagcatatacat |
15854063 |
T |
|
| Q |
112 |
acatagaaatatccagcttatacatccaatcaaatcttttaaccatttctactacagttaacatcaatcaaaagacttaacaactgctgtcaaaatgata |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15854064 |
gcatagaaatatccagcttatacatccaatcaaatcttttaaacatttctactacagttaacatcaatcaaaagacttaacaactgctgtcaaaatgata |
15854163 |
T |
|
| Q |
212 |
gtagcatttaataaaattctgtatctagtgtgttaaaaatcttaccgtttaaaaaccattcggacttgctgctgatattgattttacgcataattgtaat |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15854164 |
gtagcatttaataaaattctgtatctagtgtgttaaaaatcttaccgtttaaaaaccattcggacttgcggctgatattgattttacgcataattgtaat |
15854263 |
T |
|
| Q |
312 |
gtgatcccctttatgctcccctcttaaggttatcttaatgtggccggactcttttccctccttcacaaattctgcaacacgcgtggctcgcccaagcaac |
411 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15854264 |
gtgatcccctatatgctcccctcttaaggtaatcttaatgtggccggactcttttccctccttcacaaattctgcaacacacgtggctcgcccaagcaac |
15854363 |
T |
|
| Q |
412 |
tgcggaaaatgaagttgtcat |
432 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
15854364 |
tgcagaaaatgaagttgtcat |
15854384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 147 - 419
Target Start/End: Complemental strand, 10691242 - 10690972
Alignment:
| Q |
147 |
cttttaaccatttctactacagttaacatcaatcaaaagacttaacaactgctgtcaaaatgatagtagcatttaataaaattctgtatctagtgtgtta |
246 |
Q |
| |
|
||||||| |||||||| ||||||||| ||||| ||||||||||||||| |||| ||||| ||| |||||||| ||||||| | ||||| ||||| | |
|
|
| T |
10691242 |
cttttaaacatttctaatacagttaaaatcaaccaaaagacttaacaattgctatcaaagtgaacgtagcattcaataaaagagtatatct--tgtgtca |
10691145 |
T |
|
| Q |
247 |
aaaatcttaccgtttaaaaaccattcggacttgctgctgatattgattttacgcataattgtaatgtgatcccctttatgctcccctcttaaggttatct |
346 |
Q |
| |
|
|||| | ||| ||||||| |||||| |||||| |||| | || |||||||||||||||||||| || ||| ||||||| ||||| || ||||| |||| |
|
|
| T |
10691144 |
aaaaacccaccatttaaaacccattccgacttgttgctagtgtttattttacgcataattgtaatttgctcctctttatggtcccccctcaaggtaatct |
10691045 |
T |
|
| Q |
347 |
taatgtggccggactcttttccctccttcacaaattctgcaacacgcgtggctcgcccaagcaactgcggaaa |
419 |
Q |
| |
|
||||||| || || |||| |||| |||||||||| | || || ||||||||||||||||||||| |||| |
|
|
| T |
10691044 |
taatgtgcccagaatcttctccccgcttcacaaatgcctgaatacttgtggctcgcccaagcaactgcagaaa |
10690972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 259 - 413
Target Start/End: Complemental strand, 47430924 - 47430770
Alignment:
| Q |
259 |
tttaaaaaccattcggacttgctgctgatattgattttacgcataattgtaatgtgatcccctttatgctcccctcttaaggttatcttaatgtggccgg |
358 |
Q |
| |
|
||||||| ||||||||||||| || || | || ||||||||||||||||||||||||||| ||||||| || || || ||||| |||||||||||||| | |
|
|
| T |
47430924 |
tttaaaacccattcggacttgttgatggtgtttattttacgcataattgtaatgtgatcctctttatggtctcccctcaaggtaatcttaatgtggccag |
47430825 |
T |
|
| Q |
359 |
actcttttccctccttcacaaattctgcaacacgcgtggctcgcccaagcaactg |
413 |
Q |
| |
|
| |||| |||| ||||||| || | | || || |||||||||||||||||||| |
|
|
| T |
47430824 |
aatcttctccccgcttcacatatgccggaatacttgtggctcgcccaagcaactg |
47430770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University