View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5939_low_14 (Length: 425)
Name: NF5939_low_14
Description: NF5939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5939_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 6357646 - 6358058
Alignment:
| Q |
1 |
atgtttgtcccaggttccttaatgcactaccattaacatttagtgtcaaagtattgttgtcaacctgtttccaacaaacttggagttaccaaatgctcgt |
100 |
Q |
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| T |
6357646 |
atgtttgtcccaggttccttaatgcactaccattaacatttagtgtcaaagtattgttgtcaacatgtttccaacaaacttggagttaccaaatgctcgt |
6357745 |
T |
|
| Q |
101 |
cgtgagatatagagctgggaaaagatcgaatcaattgtagaatcagtcaca----tagtttcttcaaaaacaaatttattcattgtacaccacaagttcc |
196 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6357746 |
tgtgagatatagagctgggaaaagatcgaatcgattgtagaatcagtcacaatcttagtttcttcaaaaacaaatttattcattgtacaccacaagttcc |
6357845 |
T |
|
| Q |
197 |
acataatcaaagtagctatgtttccttcttcgacaaccatattttgcaaggcatctaaaatcttcaaactatctgactcaagaattcttcgaggaacttt |
296 |
Q |
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| T |
6357846 |
acataatcaaagtagctatgtttccttcttcgacaaccatattttgcaaggcatctaaaatcttcaaactatctgactcaagaattcttcgaggaacttt |
6357945 |
T |
|
| Q |
297 |
caaggaaccacatgtacgcaaaatagacacagttcacaggaaaagcaataggaaatgaatattagtttcgatgtcaccaacacataacggaaggtagaag |
396 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6357946 |
caaggaaccacatgtacgcaaaatagacacagttcgcaggcaaagcaataggaaatgaatattagtttcgatgtcaccaacacataacggaaggtagaag |
6358045 |
T |
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| Q |
397 |
aaattgttggaac |
409 |
Q |
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| T |
6358046 |
aaattgttggaac |
6358058 |
T |
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Back To:
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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 7588651 - 7588715
Alignment:
| Q |
158 |
cttcaaaaacaaatttattcattgtacaccacaagttccacataatcaaagtagctatgtttcct |
222 |
Q |
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| T |
7588651 |
cttcaaagacaaatttattccttatacaccaaatattccacatgatcaaaggagctatgattcct |
7588715 |
T |
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