View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5939_low_16 (Length: 414)

Name: NF5939_low_16
Description: NF5939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5939_low_16
NF5939_low_16
[»] chr8 (21 HSPs)
chr8 (17-385)||(36472857-36473225)
chr8 (17-194)||(41322552-41322729)
chr8 (17-194)||(29314022-29314199)
chr8 (17-194)||(39112671-39112848)
chr8 (17-195)||(15561912-15562090)
chr8 (25-194)||(2001679-2001847)
chr8 (209-383)||(36463795-36463970)
chr8 (17-192)||(11653712-11653890)
chr8 (17-137)||(34392131-34392251)
chr8 (92-194)||(33888946-33889048)
chr8 (17-138)||(4851756-4851877)
chr8 (35-165)||(11643324-11643455)
chr8 (17-130)||(8551512-8551625)
chr8 (114-194)||(37919508-37919588)
chr8 (29-194)||(1005624-1005792)
chr8 (31-148)||(5548972-5549089)
chr8 (148-194)||(4824296-4824342)
chr8 (23-129)||(37919603-37919709)
chr8 (32-149)||(4794159-4794275)
chr8 (161-194)||(1416048-1416081)
chr8 (157-194)||(13357629-13357666)
[»] chr2 (23 HSPs)
chr2 (17-194)||(13686016-13686193)
chr2 (17-190)||(41464902-41465075)
chr2 (17-194)||(25414936-25415113)
chr2 (18-193)||(19898943-19899118)
chr2 (17-194)||(14940986-14941164)
chr2 (17-177)||(3810285-3810445)
chr2 (17-193)||(42263854-42264030)
chr2 (17-194)||(28429304-28429478)
chr2 (17-194)||(35323474-35323651)
chr2 (17-194)||(45093148-45093321)
chr2 (77-194)||(28716316-28716433)
chr2 (17-194)||(35676270-35676453)
chr2 (17-136)||(29689277-29689393)
chr2 (17-134)||(2752692-2752809)
chr2 (35-173)||(40126520-40126658)
chr2 (17-194)||(16058375-16058549)
chr2 (18-194)||(36690818-36690995)
chr2 (17-103)||(23454350-23454437)
chr2 (153-195)||(24413862-24413904)
chr2 (21-75)||(28716457-28716511)
chr2 (148-190)||(13685997-13686039)
chr2 (148-190)||(42263835-42263877)
chr2 (114-150)||(3377049-3377084)
[»] chr3 (22 HSPs)
chr3 (17-194)||(521763-521940)
chr3 (17-192)||(45166249-45166424)
chr3 (17-194)||(50612873-50613050)
chr3 (17-194)||(31788328-31788505)
chr3 (17-192)||(38176390-38176565)
chr3 (17-194)||(36517537-36517714)
chr3 (17-194)||(23642978-23643155)
chr3 (17-165)||(1561283-1561431)
chr3 (17-177)||(20912190-20912350)
chr3 (17-194)||(39145274-39145451)
chr3 (17-194)||(52546765-52546942)
chr3 (17-194)||(34624486-34624651)
chr3 (17-194)||(51297022-51297200)
chr3 (77-148)||(22650440-22650511)
chr3 (31-138)||(9496567-9496674)
chr3 (17-63)||(43203271-43203317)
chr3 (31-138)||(15461578-15461685)
chr3 (148-190)||(38176542-38176584)
chr3 (148-188)||(1561408-1561448)
chr3 (97-137)||(8325457-8325497)
chr3 (53-89)||(29011343-29011379)
chr3 (150-190)||(45166230-45166270)
[»] chr1 (24 HSPs)
chr1 (17-194)||(31032696-31032873)
chr1 (17-185)||(1270194-1270362)
chr1 (17-185)||(29095530-29095698)
chr1 (17-194)||(34475922-34476099)
chr1 (17-194)||(42480144-42480323)
chr1 (17-194)||(20808970-20809147)
chr1 (17-183)||(9098579-9098742)
chr1 (17-194)||(16254878-16255054)
chr1 (17-192)||(34807959-34808134)
chr1 (34-193)||(47550831-47550990)
chr1 (18-194)||(45010224-45010399)
chr1 (17-134)||(24135778-24135893)
chr1 (41-194)||(44714807-44714960)
chr1 (52-179)||(2958710-2958832)
chr1 (17-119)||(4194789-4194891)
chr1 (87-199)||(4624438-4624543)
chr1 (123-191)||(41647356-41647424)
chr1 (32-148)||(48148828-48148939)
chr1 (17-71)||(41646599-41646652)
chr1 (32-148)||(27143603-27143719)
chr1 (17-62)||(7167455-7167500)
chr1 (17-102)||(50663754-50663839)
chr1 (148-190)||(29095675-29095717)
chr1 (148-190)||(31032850-31032892)
[»] chr4 (20 HSPs)
chr4 (17-193)||(24683099-24683275)
chr4 (17-194)||(18375390-18375566)
chr4 (17-193)||(37674000-37674176)
chr4 (17-194)||(41633240-41633416)
chr4 (49-196)||(54358167-54358314)
chr4 (17-194)||(17847541-17847713)
chr4 (17-194)||(23348112-23348292)
chr4 (17-165)||(26179238-26179386)
chr4 (47-194)||(4512161-4512309)
chr4 (33-194)||(47838942-47839102)
chr4 (77-193)||(41878599-41878715)
chr4 (47-194)||(54021241-54021391)
chr4 (17-137)||(47281588-47281712)
chr4 (109-196)||(41497888-41497977)
chr4 (17-71)||(41878344-41878398)
chr4 (152-194)||(52726030-52726072)
chr4 (148-190)||(4098534-4098576)
chr4 (148-190)||(18375543-18375585)
chr4 (136-185)||(4098483-4098532)
chr4 (159-192)||(47282226-47282259)
[»] chr5 (25 HSPs)
chr5 (17-194)||(4391844-4392021)
chr5 (17-192)||(37093912-37094087)
chr5 (17-194)||(32891197-32891374)
chr5 (17-194)||(8692531-8692708)
chr5 (17-194)||(34286617-34286793)
chr5 (17-194)||(3456775-3456949)
chr5 (17-194)||(228046-228223)
chr5 (56-194)||(5481414-5481552)
chr5 (17-167)||(28434224-28434374)
chr5 (17-142)||(38614231-38614359)
chr5 (17-142)||(11739270-11739395)
chr5 (17-178)||(31644661-31644812)
chr5 (17-155)||(41326486-41326624)
chr5 (77-174)||(40925918-40926015)
chr5 (17-138)||(29223488-29223607)
chr5 (17-158)||(35672345-35672485)
chr5 (72-150)||(6614289-6614367)
chr5 (121-194)||(42148957-42149030)
chr5 (150-194)||(43141519-43141563)
chr5 (31-146)||(16516963-16517078)
chr5 (35-92)||(42148899-42148956)
chr5 (148-191)||(4391998-4392041)
chr5 (148-190)||(228027-228069)
chr5 (148-190)||(8692512-8692554)
chr5 (148-190)||(32891178-32891220)
[»] chr7 (9 HSPs)
chr7 (18-194)||(23991949-23992125)
chr7 (17-173)||(27425773-27425929)
chr7 (17-137)||(22326881-22327001)
chr7 (35-194)||(42195418-42195577)
chr7 (17-194)||(8307548-8307723)
chr7 (17-157)||(17611865-17612005)
chr7 (35-194)||(25686406-25686563)
chr7 (32-110)||(41405797-41405875)
chr7 (87-156)||(10485300-10485369)
[»] chr6 (9 HSPs)
chr6 (17-194)||(7646773-7646950)
chr6 (17-180)||(25935531-25935694)
chr6 (23-130)||(12607123-12607230)
chr6 (32-167)||(29487541-29487676)
chr6 (106-194)||(17366934-17367016)
chr6 (118-194)||(12607030-12607107)
chr6 (33-120)||(29636994-29637081)
chr6 (93-137)||(28898438-28898482)
chr6 (164-194)||(3835318-3835348)
[»] scaffold0002 (2 HSPs)
scaffold0002 (17-193)||(492689-492865)
scaffold0002 (148-190)||(492670-492712)
[»] scaffold0132 (2 HSPs)
scaffold0132 (17-101)||(559-642)
scaffold0132 (17-101)||(8519-8602)
[»] scaffold0339 (1 HSPs)
scaffold0339 (129-194)||(13378-13442)
[»] scaffold0071 (1 HSPs)
scaffold0071 (31-138)||(507-614)


Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 17 - 385
Target Start/End: Complemental strand, 36473225 - 36472857
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |  |||||||  || |||| ||| ||||||||||||||||||| |||||||||||    
T  36473225 aataacatcaagaattcttcaagaataaagagcagtcaatcacagtacactatttgacacaatttaaggaggtgtggctgaaaaataggaagtgaacaaa 36473126  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttccgtccaacatatatctatttttt 216  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| | ||||||    
T  36473125 taaatcatgcaattaaaacttaccaattgtgtcttgaaaaattcttgatgttatttttctagagaaatagcattttccgtccaacatatatttttttttt 36473026  T
Q  217 ctaatgaaatatgaaaatgccatgaatgtgtagatttctgttatcgagaatgtttattggaaggaacttggacttcttttctctgtttggatcatgatac 316  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36473025 ctaatgaaatatgaaaatgccatgaatgtgtaggtttctgttatcgagaatgtttattggaaggaacttggacttcttttctctgtttggatcatgatac 36472926  T
Q  317 ttgcattacagataggaaaagtaagtatatatctcatgagctatatattcaactcaaaattagttgata 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36472925 ttgcattacagataggaaaagtaagtatatatctcatgagctatatattcaactcaaaattagttgata 36472857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 41322552 - 41322729
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||   | |||||||| ||||||||  ||||||||| |||| |||||     
T  41322552 aataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcactatttgtgaaaattcaaggaggtgtggtagaaaaataggaagttaacaat 41322651  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41322652 taaatcatgcaattaaaacttgctaactatgtcttgaaaaattcttgatgctatttttctagagaaatagcattttcc 41322729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 29314022 - 29314199
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||||||||||||||| || |||||||||||| || ||||||||||| ||||||| ||| |||| ||| ||||||| ||||||||||||||||| |||||    
T  29314022 aataacatcaagaattgtttaagaataaagagaagtcaatcacaatgcactatttgccacaatttaaggaggtgtgactgaaaaatagaaagtggacaaa 29314121  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||    
T  29314122 taaataatgcaattaaaacttaccaactgtgtcttgaaaaattcttgatactatttttttagagaaatagcattttcc 29314199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 39112671 - 39112848
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |||||||||||| ||||| |||||||||||||||||||||||||    
T  39112671 aataacatcaagaattcttcaaaaataaagagcaaccaatcacaatgcactatttgccataattcaaggaggtgcggctgaaaaatagaaagtgaacaaa 39112770  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    |||||||| ||||||||| ||||||| ||||||||||||||   || ||||||||||||||||||  || ||||||||    
T  39112771 taaatcatccaattaaaatttgccaattgtgtcttgaaaaaaatttaatgctatttttctagagatgtagcattttcc 39112848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 15562090 - 15561912
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||| ||   || ||||||||| | ||| |||||  |||| | ||||| ||| |||||||| ||||||||||||||||||| |||||||||||    
T  15562090 aataacatcaaaaaaattttaagaataaataacagtcaatcgtaatgcattatttgccacaattcaaggaggtgtggctgaaaaataggaagtgaacaaa 15561991  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttccg 195  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||    
T  15561990 taaatcatacaattaaaacttgccaactgtatcttgaaaaattcttgatgctatttttctagataaatagcattttccg 15561912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 25 - 194
Target Start/End: Original strand, 2001679 - 2001847
Alignment:
Q  25 caagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcat 124  Q
    ||||||||||||||||||||||||||| |||||| |||  || |||| ||| |||| ||| ||||||||||| |||||||| ||||||||||||||||||    
T  2001679 caagaattcttcaagaataaagagcagtcaatca-aatacacgatttgccacaatttaaggaggtgtggctggaaaatagatagtgaacaaataaatcat 2001777  T
Q  125 gcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    | |||||||||||| || |||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  2001778 gtaattaaaacttggcagctgtgtcttgaaaaaaatttgatgctatttttctagagaaataacattttcc 2001847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 209 - 383
Target Start/End: Complemental strand, 36463970 - 36463795
Alignment:
Q  209 tattttttctaatgaaatatgaaaatgccatgaatg--tgtagatttctgttatcgagaatgtttattggaaggaacttggacttcttttctctgtttgg 306  Q
    |||| ||||||||||||| ||||| || |||| |||  || || |||||||||| |||||||||| |||||||||| |||||||||| |||| |||||||    
T  36463970 tattctttctaatgaaatctgaaactgtcatgcatgaatgcaggtttctgttattgagaatgtttcttggaaggaagttggacttctcttctttgtttgg 36463871  T
Q  307 atcatgatacttgcattacagataggaaaagtaagtatatatctcatgagctatatattcaactcaaaattagttga 383  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||| ||||| ||||    
T  36463870 atcatgatacttgcattacagataggaaaagttagtatatatctcatgagctata-actcaactcacaattatttga 36463795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 11653890 - 11653712
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcac----aatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaa 112  Q
    ||||||||||||||||||||||||||||||||||| ||||||     |||||||||||| ||| |||||||| | |||||||| ||||| || |||||||    
T  11653890 aataacatcaagaattcttcaagaataaagagcagtcaatcaatcataatgtactatttgccacaattcaaggatgtgtggcttaaaaa-agtaagtgaa 11653792  T
Q  113 caaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacatttt 192  Q
    ||||||||||||| |||||||||||| || | ||||||| |||||||||||||| ||||||| |||||||||| ||||||    
T  11653791 caaataaatcatgtaattaaaacttgtcagccgtgtcttaaaaaattcttgatgttatttttgtagagaaatagcatttt 11653712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 34392131 - 34392251
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||||||||||||||| |||||||||||||||||  ||||||||||||||||||| ||| |||| |||||||||||||||||||||  ||||||||||||    
T  34392131 aataacatcaagaatttttcaagaataaagagcactcaatcacaatgtactatttgccacaatttaagaaggtgtggctgaaaaatgaaaagtgaacaaa 34392230  T
Q  117 taaatcatgcaattaaaactt 137  Q
    |||||||||||||||||||||    
T  34392231 taaatcatgcaattaaaactt 34392251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 92 - 194
Target Start/End: Original strand, 33888946 - 33889048
Alignment:
Q  92 ggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattt 191  Q
    |||||||||||||  ||||||||||||||| |||||||||||||||| ||  ||| |||||||||||||||||||||||||||||||||||||| |||||    
T  33888946 ggctgaaaaatagggagtgaacaaataaattatgcaattaaaacttgtcagttgtttcttgaaaaattcttgatgctatttttctagagaaatagcattt 33889045  T
Q  192 tcc 194  Q
    |||    
T  33889046 tcc 33889048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 4851756 - 4851877
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||||||||||||||| || ||||||||||||||| |||||| |||| ||||||| ||| |||| ||| | ||||||||||||||||| || | ||||||    
T  4851756 aataacatcaagaattttttaagaataaagagcagtcaatcataatgcactattttccacaatttaaggaagtgtggctgaaaaataggaaataaacaaa 4851855  T
Q  117 taaatcatgcaattaaaacttg 138  Q
    ||||||||||||||||||||||    
T  4851856 taaatcatgcaattaaaacttg 4851877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 35 - 165
Target Start/End: Original strand, 11643324 - 11643455
Alignment:
Q  35 tcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaa 134  Q
    ||||||||||||||||| ||||||||||| ||||||||||| |||| ||||| |||| | |||||||||  ||||||||||||||||||| |||||||||    
T  11643324 tcaagaataaagagcagtcaatcacaatgcactatttaccacaatttaagaaagtgtagttgaaaaatacgaagtgaacaaataaatcatacaattaaaa 11643423  T
Q  135 cttgcca-actgtgtcttgaaaaattcttgat 165  Q
     ||||||  ||||||||  |||||||||||||    
T  11643424 tttgccatgctgtgtctgaaaaaattcttgat 11643455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 8551512 - 8551625
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||||||| ||||||||||| |||||||||| || |||||||||||| | | ||| ||| |||| ||| || ||||| | ||||||||||| ||||||||    
T  8551512 aataacattaagaattcttcgagaataaagaacaaccaatcacaatgcattgtttgccacaattaaaggagatgtggttaaaaaatagaaaatgaacaaa 8551611  T
Q  117 taaatcatgcaatt 130  Q
    ||||||||||||||    
T  8551612 taaatcatgcaatt 8551625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 37919588 - 37919508
Alignment:
Q  114 aaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    |||||||| | |||||||||||||| ||||||||| |||| ||||||||||| ||||||||||||||||||| ||||||||    
T  37919588 aaataaattacgcaattaaaacttgtcaactgtgttttgataaattcttgatactatttttctagagaaatagcattttcc 37919508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 29 - 194
Target Start/End: Original strand, 1005624 - 1005792
Alignment:
Q  29 aattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaa 128  Q
    ||||||| |||||||||||| |  |||| | |||| || ||||  || |||| ||  ||||||| ||||||||||| |||||||||||||||| ||||||    
T  1005624 aattcttaaagaataaagagtaatcaattataatgcaccatttgacacaatttaaagaggtgtgactgaaaaataggaagtgaacaaataaattatgcaa 1005723  T
Q  129 ttaaaacttgcca-actgtgtcttgaaaaattcttgatgcta--tttttctagagaaataacattttcc 194  Q
    |||||||||| ||   |||| ||| ||||| | |||||||||  ||||| |||||||||| ||||||||    
T  1005724 ttaaaacttgtcagtttgtgccttaaaaaaattttgatgctatttttttttagagaaatagcattttcc 1005792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 5548972 - 5549089
Alignment:
Q  31 ttcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaatt 130  Q
    ||||||||||||||||||||| |||||| |||  | || || ||||||| || |  |||||  ||||| |||||  ||||||||||||||||||||||||    
T  5548972 ttcttcaagaataaagagcagtcaatcataattcagtacttgccataatacacggtggtgtccctgaacaatagggagtgaacaaataaatcatgcaatt 5549071  T
Q  131 aaaacttgccaactgtgt 148  Q
    | | |||| |||||||||    
T  5549072 ataccttgacaactgtgt 5549089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 4824296 - 4824342
Alignment:
Q  148 tcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||    
T  4824296 tcttgaaaaattcttaatgctatttttctagagaaatagcattttcc 4824342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 37919709 - 37919603
Alignment:
Q  23 atcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatc 122  Q
    |||||||||| || ||||||||| | ||  ||||||||||| | |||||  || |||| ||| || ||||  |||||||||| |||||||||||||||||    
T  37919709 atcaagaattttttaagaataaataacaatcaatcacaatgcattatttgtcacaatttaaggagatgtgagtgaaaaatagtaagtgaacaaataaatc 37919610  T
Q  123 atgcaat 129  Q
    |||||||    
T  37919609 atgcaat 37919603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 149
Target Start/End: Original strand, 4794159 - 4794275
Alignment:
Q  32 tcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaatta 131  Q
    |||||||||||||| ||||||||||||||||| ||||||| ||| |||  | | |||| ||||  |||||||| |||||||| ||||||  ||||||| |    
T  4794159 tcttcaagaataaatagcagccaatcacaatgcactatttgccacaatatatggaggtttggccaaaaaataggaagtgaac-aataaacaatgcaataa 4794257  T
Q  132 aaacttgccaactgtgtc 149  Q
    | | |||||| |||||||    
T  4794258 acatttgccagctgtgtc 4794275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 1416081 - 1416048
Alignment:
Q  161 ttgatgctatttttctagagaaataacattttcc 194  Q
    ||||||||||||||||||||||||||||||||||    
T  1416081 ttgatgctatttttctagagaaataacattttcc 1416048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 13357666 - 13357629
Alignment:
Q  157 attcttgatgctatttttctagagaaataacattttcc 194  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  13357666 attcttgatgctatttttctagataaatagcattttcc 13357629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 138; Significance: 5e-72; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 13686016 - 13686193
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||| || ||| |||||||| ||||||||||||||||||| |||||||||||    
T  13686016 aataacatcaagaatttttcaagaataaagagcagccaatcacaatgcactacttgccacaattcaaggaggtgtggctgaaaaataggaagtgaacaaa 13686115  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  13686116 taaatcatgcaattaaaacttgccaattgtgtcttaaaaaattcttgatgctatttttctagagaaatagcattttcc 13686193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 41465075 - 41464902
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||||||||||||||||||||||||||||| |||||  ||||||||| ||||||| ||  |||||||| |||||||| ||||||||||||||||||||||    
T  41465075 aataacatcaagaattcttcaagaataaagtgcagcggatcacaatgcactatttgccgcaattcaaggaggtgtggttgaaaaatagaaagtgaacaaa 41464976  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacatt 190  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41464975 taaatcatgcaattaaaacttgtcaactgtgtcttgaaaaattcttgatgttatttttctagagaaataacatt 41464902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 25414936 - 25415113
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| ||| |||||||| |||| ||||||||||| ||||||||||||||    
T  25414936 aataacatcaagaattcttcaagaataaagaacagtcaatcacaatgcactatttgccacaattcaaggaggtatggctgaaaaaaagaaagtgaacaaa 25415035  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    |||||||||||||||||||||  || |||||||||||||||||||| || ||||||||||||||| ||| ||||||||    
T  25415036 taaatcatgcaattaaaacttatcagctgtgtcttgaaaaattctttatactatttttctagagatatagcattttcc 25415113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 19898943 - 19899118
Alignment:
Q  18 ataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaat 117  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| | |||||  || |||||||| |||| | |||||||| ||| ||||||||||||    
T  19898943 ataacattaagaattcttcaagaataaagagcagccaatcacaatgcattatttgtcacaattcaaggaggtattgctgaaaattaggaagtgaacaaat 19899042  T
Q  118 aaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttc 193  Q
    ||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  19899043 aaatcatgcaattaaaacttgccagttgtgtcttgaaaaattcgtgatgctatttttctagagaaatagcattttc 19899118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 14941164 - 14940986
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggct-gaaaaatagaaagtgaacaa 115  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||| |||||||  ||||||| || ||||||||  ||||||||||    
T  14941164 aataacatcaataattcttcaagaataaagagcagtcaatcacaatgcactatttgccacaattcaaagaggtgtgactcgaaaaataagaagtgaacaa 14941065  T
Q  116 ataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    |||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14941064 ataaatcatgaaattaaaacttgccagttgtgtcttgaaaaattcttgatgctatttttctagagaaatagcattttcc 14940986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 3810445 - 3810285
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||||||| || |||||||||||||||||||| ||||||| |||||| ||||||| ||| |||||||| ||||||| ||||||||||  |||||||||||    
T  3810445 aataacattaataattcttcaagaataaagagtagccaattacaatgcactatttgccacaattcaaggaggtgtgactgaaaaataagaagtgaacaaa 3810346  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttcta 177  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  3810345 taaatcatgcaattaaaacttgccagctgtgtcttgaaaatttcttgatgctatttttcta 3810285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 42263854 - 42264030
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||  || |||||||| ||||||||||||||||||| || ||||||||    
T  42263854 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgcacaatttgtcacaattcaaggaggtgtggctgaaaaataggaaatgaacaaa 42263953  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttc 193  Q
    ||||| |||||||||||||||| |    ||||||||||||| | |||||||||||||| ||||||||||||||||||    
T  42263954 taaattatgcaattaaaacttgactgtcgtgtcttgaaaaaattttgatgctatttttttagagaaataacattttc 42264030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 28429304 - 28429478
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||| | ||||| |||||||| ||| ||||||| ||||||||||  |||||||||||    
T  28429304 aataatatcaagaattcttcaagaataaagagcagccaaacacaatgcattatttgccataatttaaggaggtgtgactgaaaaataagaagtgaacaaa 28429403  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    |||||||||||||||||||||| ||   ||||| ||||||||||||||||||||||||||| ||||||| ||||||||    
T  28429404 taaatcatgcaattaaaacttgtca---gtgtcatgaaaaattcttgatgctatttttctaaagaaatagcattttcc 28429478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 35323651 - 35323474
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||||||  ||||||| ||| |||||||  |||||||||||||||||| ||| |||||| |    
T  35323651 aataacatcaaaaattcttcaagaataaagaacagtcaatcacaatacactatttgccacaattcaatgaggtgtggctgaaaaataaaaactgaacata 35323552  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    ||||||||| |||||||||||| |||||||||||  |||||||||| || ||||||||||||||||||||||||||||    
T  35323551 taaatcatgtaattaaaacttgtcaactgtgtctgaaaaaattcttaatactatttttctagagaaataacattttcc 35323474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 45093321 - 45093148
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||| ||||||||||||||||||||||    ||||||||| ||||||| ||| |||||||| |||| || ||||||||||| |||| |||||     
T  45093321 aataacatcaataattcttcaagaataaagagca----atcacaatgcactatttgccacaattcaaggaggtatgactgaaaaataggaagtaaacaat 45093226  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    |||||||||||||||||| || |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  45093225 taaatcatgcaattaaaatttcccaactgtatcttaaaaaattcttgatgctatttttctagagaaataacattttcc 45093148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 28716433 - 28716316
Alignment:
Q  77 aattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttct 176  Q
    |||||||  ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  28716433 aattcaaagaggtgtggctgaaaaataggaagtgaacaaataaataatgcaattaaaacttgccagttgtgtcttgaaaaattcttgatgctatttttct 28716334  T
Q  177 agagaaataacattttcc 194  Q
    ||| ||||||||||||||    
T  28716333 agaaaaataacattttcc 28716316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 35676453 - 35676270
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||||||||||| ||||||||||||||| ||| ||||||| ||||||| ||| |||||||| ||||||| ||||||||||  |||||||||||    
T  35676453 aataacatcaagaattctttaagaataaagagcagtcaaccacaatgcactatttgccacaattcaaggaggtgtgactgaaaaatatgaagtgaacaaa 35676354  T
Q  117 taaatcatg-------caattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    ||||| |||       ||||||||||||||||  |||||||  ||||| ||||||||||||||||||||||||||| ||||||||    
T  35676353 taaat-atgaagtgaacaattaaaacttgccagttgtgtctaaaaaaaatcttgatgctatttttctagagaaatagcattttcc 35676270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 17 - 136
Target Start/End: Complemental strand, 29689393 - 29689277
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||||||||||||||| || ||||||||||||||   |||||||||| ||||||| | |||||||||| |||| || ||||||||||| |||||||| ||    
T  29689393 aataacatcaagaattttttaagaataaagagca---aatcacaatgcactatttgctataattcaaggaggtttgactgaaaaataggaagtgaactaa 29689297  T
Q  117 taaatcatgcaattaaaact 136  Q
    ||||||||||||||||||||    
T  29689296 taaatcatgcaattaaaact 29689277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 2752809 - 2752692
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||||| ||||||| ||| |||||||| || | || ||||||||||  ||||||| |||    
T  2752809 aataacattaagaattcttcaagaaaaaatagcagccaatcacaatgcactatttgccacaattcaaggagatctgactgaaaaataagaagtgaataaa 2752710  T
Q  117 taaatcatgcaattaaaa 134  Q
    |||||||| |||||||||    
T  2752709 taaatcatacaattaaaa 2752692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 35 - 173
Target Start/End: Complemental strand, 40126658 - 40126520
Alignment:
Q  35 tcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaa 134  Q
    ||||||||||||||||| || ||| |||| |||||||| || |||| |||||| | | | |||||||||| ||||||||||||||||||| |||||||||    
T  40126658 tcaagaataaagagcagtcattcataatgcactatttatcacaatttaagaagatatagttgaaaaataggaagtgaacaaataaatcatacaattaaaa 40126559  T
Q  135 cttgccaactgtgtcttgaaaaattcttgatgctatttt 173  Q
     |||  | |||| |||| ||||||||| |||||||||||    
T  40126558 tttgtgagctgtatcttaaaaaattctcgatgctatttt 40126520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 16058549 - 16058375
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaag--gtgtggctgaaaaatagaaagtgaaca 114  Q
    |||||||| ||||||||||||||||||||||| || | || | |||| || ||||  || |||||||| ||  ||||||||||||||||  ||||||| |    
T  16058549 aataacattaagaattcttcaagaataaagagtagtctataataatgaac-atttgtcacaattcaaggagttgtgtggctgaaaaatatgaagtgaata 16058451  T
Q  115 aataaatcatgcaattaaaacttgccaactgtgtctt-gaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    |||||||||||||| |||||||||     ||||||||  |||||||||||||||||||||| ||||||||||| |||||||    
T  16058450 aataaatcatgcaaataaaacttg----ttgtgtcttaaaaaaattcttgatgctattttt-tagagaaataagattttcc 16058375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 36690995 - 36690818
Alignment:
Q  18 ataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaat 117  Q
    |||||||||| |||||||||| |||||| | || ||||| | |||  | ||||| ||| |||||||| | | ||||||||||  ||| ||||||||||||    
T  36690995 ataacatcaaaaattcttcaaaaataaaaaacatccaattataatacagtatttgccacaattcaaggaagcgtggctgaaag-taggaagtgaacaaat 36690897  T
Q  118 aaatcatgcaattaaaacttgccaactgtgtcttgaaaa--attcttgatgctatttttctagagaaataacattttcc 194  Q
    |||||| | |||||||| ||| || ||||||||||||||  |||||| ||| |||||||||| ||||||| ||||||||    
T  36690896 aaatcaagtaattaaaatttgtcagctgtgtcttgaaaaatattcttaatgttatttttctaaagaaatagcattttcc 36690818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 23454437 - 23454350
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtact-atttaccataattcaagaaggtgtggctgaaaaata 103  Q
    |||||||| || ||||||||||||||||||||||| ||||||||||| ||| ||||  || |||||||| ||||| | ||||||||||    
T  23454437 aataacataaaaaattcttcaagaataaagagcagtcaatcacaatgcactaatttgacacaattcaaggaggtgcgactgaaaaata 23454350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 195
Target Start/End: Original strand, 24413862 - 24413904
Alignment:
Q  153 aaaaattcttgatgctatttttctagagaaataacattttccg 195  Q
    ||||||| ||||||||||||||||||||||||| |||||||||    
T  24413862 aaaaattattgatgctatttttctagagaaatagcattttccg 24413904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 28716511 - 28716457
Alignment:
Q  21 acatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttacca 75  Q
    ||||||||||||||||||||||||| || |||| ||||||||| ||||||| |||    
T  28716511 acatcaagaattcttcaagaataaatagtagccgatcacaatgcactatttgcca 28716457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 13686039 - 13685997
Alignment:
Q  148 tcttgaaaaattcttgatgctatttttctagagaaataacatt 190  Q
    ||||||||||||||||||| |||||||||||||| ||| ||||    
T  13686039 tcttgaaaaattcttgatgttatttttctagagatatagcatt 13685997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 42263877 - 42263835
Alignment:
Q  148 tcttgaaaaattcttgatgctatttttctagagaaataacatt 190  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||    
T  42263877 tcttgaagaattcttgatgttatttttctagagatataacatt 42263835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 3377084 - 3377049
Alignment:
Q  114 aaataaatcatgcaattaaaacttgccaactgtgtct 150  Q
    ||||||||||||||||||||||||| |||||||||||    
T  3377084 aaataaatcatgcaattaaaacttg-caactgtgtct 3377049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 521940 - 521763
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||| ||||||||||||||||||| |||||||||||    
T  521940 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaataggaagtgaacaaa 521841  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||| ||||| |||||| ||||| ||||||||    
T  521840 taaatcatgcaattaaaacttgacaactgtgtcttaaaaaattcttgatgatatttgtctagataaatagcattttcc 521763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 45166249 - 45166424
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||| |||||||| ||| |||||||||||||||  |||| |||||    
T  45166249 aataacatcaagaattcttcaataataaagagcagccaatcacaatgcactatttgccacaattcaaggaggcgtggctgaaaaatagggagtggacaaa 45166348  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacatttt 192  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  45166349 taaatcatgcaattaaaatttgccaactgcgtcttgaaaaattcttgatgctatttttctagagaaataacatttt 45166424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 50613050 - 50612873
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||| ||||||| |||||||||| ||||||||||||    
T  50613050 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgactgaaaaatataaagtgaacaaa 50612951  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    ||||| |||||||||||||||| || |||||| ||||||||||||||||||| ||||| |||||||||||||||||||    
T  50612950 taaattatgcaattaaaacttgtcagctgtgtattgaaaaattcttgatgctgtttttatagagaaataacattttcc 50612873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 31788328 - 31788505
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||  |||||||||| |||||||||||    
T  31788328 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttaccacaattcaaggaggtgtgattgaaaaataggaagtgaacaaa 31788427  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    |||||| |||| |||||||||| ||| ||||||||||||||||||||| | ||||||| |||||||||||||||||||    
T  31788428 taaatcttgcagttaaaacttgtcaattgtgtcttgaaaaattcttgaagttatttttatagagaaataacattttcc 31788505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 38176565 - 38176390
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| ||  |||||||| ||||||||||||||||||  |||||||||||    
T  38176565 aatatcatcaagaattcttcaagaataaagagcagccaatcgcaatgcactatttgcctcaattcaaggaggtgtggctgaaaaatatgaagtgaacaaa 38176466  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacatttt 192  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||    
T  38176465 taaaacatgcaattaaaacttgccaactgtgtcttgaaaaattcttaatgctatttttctaaagaaatatcatttt 38176390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 36517537 - 36517714
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| |||||||| |||||||  | |||||||| |||||||||||    
T  36517537 aataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcactatttgccacaattcaaggaggtgtgaataaaaaataggaagtgaacaaa 36517636  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| |||||| ||||| ||||||||    
T  36517637 taaatcatgcaattaaaacttgccaactgtgttttgaaaaattcttgaagttatttatctagataaatagcattttcc 36517714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 23643155 - 23642978
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||||||||||||||||||||| |  || ||||||||||| ||||||| ||| |||||||| ||||||| || |||||||| |||||||||||    
T  23643155 aataacatcaagaattcttcaagaataaatattagtcaatcacaatgcactatttgccacaattcaaggaggtgtgactaaaaaataggaagtgaacaaa 23643056  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    ||||| ||| |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23643055 taaattatggaattaaaatttgtcagctgtgtcttgaaaaattcttgatgctatttttctagagaaatagcattttcc 23642978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 1561431 - 1561283
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| |||||||| ||||||||||||||||||| |||||||||||    
T  1561431 aataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaataggaagtgaacaaa 1561332  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgat 165  Q
    |||||||||||||| ||||||| || ||||||||  |||||||||||||    
T  1561331 taaatcatgcaattgaaacttgtcagctgtgtctgaaaaaattcttgat 1561283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 20912190 - 20912350
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||| |||||||  ||||||| ||| ||||||| ||||||||||| |||||||||||    
T  20912190 aataacatcaagaattcttcaagaataaagagcagtcaataacaatgcactatttgtcataatttaaggaggtgtgactgaaaaataggaagtgaacaaa 20912289  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttcta 177  Q
    |||||||||||||||||||||  || || |||||| |||||||||||||||||||||||||    
T  20912290 taaatcatgcaattaaaacttatcagctatgtctttaaaaattcttgatgctatttttcta 20912350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 39145274 - 39145451
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||| ||||||||||||| ||||||||| |||||||||| |||||| ||||||| | | |||||||  |||| || ||||||||||| || ||||||||    
T  39145274 aataatatcaagaattctttaagaataaaaagcagccaattacaatgcactatttgctacaattcaatgaggtatgactgaaaaataggaaatgaacaaa 39145373  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
     ||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  39145374 gaaatcatacaattaaaacttgacaactgtgtcttgacaaattcttgatgctatttttctagagaaatagcattttcc 39145451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 52546765 - 52546942
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||  || |||||||  |||||||  |||||||||| || ||||||||    
T  52546765 aataacatcaaaaattcttcaagaataaagagcagccaatcacaatgtgctatttgtcacaattcaatgaggtgtgagtgaaaaataggaaatgaacaaa 52546864  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    ||||| ||||||||||||||||  |  ||||||||| |||||||||||||| ||||||||||||||||| ||||||||    
T  52546865 taaattatgcaattaaaacttgtaaggtgtgtcttggaaaattcttgatgcaatttttctagagaaatagcattttcc 52546942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 34624651 - 34624486
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||  || | ||||||||||||||||| |||||||||||    
T  34624651 aataacat-aagaattcttcaagaataaagagcagccaatcacaatgcactatttaccacaatttgaggaagtgtggctgaaaaataggaagtgaacaaa 34624553  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    ||||||||||||||||||           | |||| ||||||||||||||||||||||||||||||||||||||||||    
T  34624552 taaatcatgcaattaaaa-----------tttcttaaaaaattcttgatgctatttttctagagaaataacattttcc 34624486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 51297200 - 51297022
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||||| | ||||||| ||||||| ||||||| ||||||| ||||||| ||| ||||||| ||||| || |||||||||||||||||||||||    
T  51297200 aataacatcaagagt-cttcaagcataaagaacagccaaccacaatgcactatttgccacaattcaaaaaggtatgactgaaaaatagaaagtgaacaaa 51297102  T
Q  117 taaatcatgcaattaaaacttgccaac-tgtgtcttgaaaaattcttgatgcta-tttttctagagaaataacattttcc 194  Q
    |||||||||||||||||| ||  |||| || ||||||||||| | ||||||||| ||||| |||||||||||||||||||    
T  51297101 taaatcatgcaattaaaatttatcaacttgcgtcttgaaaaaattttgatgctattttttttagagaaataacattttcc 51297022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 22650511 - 22650440
Alignment:
Q  77 aattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgt 148  Q
    |||| ||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||| | ||||||    
T  22650511 aatttaaggaggtgtggctgaaaagtaaaaagtgaacaaataaatcatgcaattaaaacttgcgagctgtgt 22650440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 9496567 - 9496674
Alignment:
Q  31 ttcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaatt 130  Q
    |||||||||||||||||| |||||||||||||  ||| ||| ||| ||| ||    ||||| ||||||||||||  ||||||||||||||||||||| ||    
T  9496567 ttcttcaagaataaagagtagccaatcacaattcactgtttgccacaatacacagtggtgttgctgaaaaatagggagtgaacaaataaatcatgcagtt 9496666  T
Q  131 aaaacttg 138  Q
    ||| ||||    
T  9496667 aaagcttg 9496674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 43203271 - 43203317
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatg 63  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  43203271 aataacatcaagaattcttcaaaaataaagagcagccaatcacaatg 43203317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 15461578 - 15461685
Alignment:
Q  31 ttcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaatt 130  Q
    |||||||||||||||||| |||||||||||||    |  ||  || ||| || || |||||  ||||||||||  |||||||||||||||||||||| ||    
T  15461578 ttcttcaagaataaagagtagccaatcacaattcggtgcttgacacaatacacgatggtgttactgaaaaataagaagtgaacaaataaatcatgcagtt 15461677  T
Q  131 aaaacttg 138  Q
    ||| ||||    
T  15461678 aaagcttg 15461685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 38176542 - 38176584
Alignment:
Q  148 tcttgaaaaattcttgatgctatttttctagagaaataacatt 190  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||    
T  38176542 tcttgaagaattcttgatgatatttttctagagatataacatt 38176584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 1561408 - 1561448
Alignment:
Q  148 tcttgaaaaattcttgatgctatttttctagagaaataaca 188  Q
    ||||||| ||||||||||| |||||||||||||| ||||||    
T  1561408 tcttgaagaattcttgatgttatttttctagagatataaca 1561448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 8325457 - 8325497
Alignment:
Q  97 aaaaatagaaagtgaacaaataaatcatgcaattaaaactt 137  Q
    ||||||| ||||| ||||||||||| |||||||||||||||    
T  8325457 aaaaataaaaagtaaacaaataaattatgcaattaaaactt 8325497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 29011379 - 29011343
Alignment:
Q  53 caatcacaatgtactatttaccataattcaagaaggt 89  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  29011379 caatcacaatgtactatttaccacaattcaaggaggt 29011343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 45166270 - 45166230
Alignment:
Q  150 ttgaaaaattcttgatgctatttttctagagaaataacatt 190  Q
    ||||| ||||||||||| |||||||||||||| ||||||||    
T  45166270 ttgaagaattcttgatgttatttttctagagatataacatt 45166230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 31032873 - 31032696
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||| |||||||||||||||||||||||||| ||| ||||||||||| ||||||| ||| | |||||| |||||||||||||||||||||||||||||||    
T  31032873 aatatcatcaagaattcttcaagaataaagatcagtcaatcacaatgcactatttgccacagttcaaggaggtgtggctgaaaaatagaaagtgaacaaa 31032774  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  31032773 taaatcatgcaattaaaacttgtcaactgtatcttgaaaaattcttgatgctatttttctagaaaaataacattttcc 31032696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 1270194 - 1270362
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| ||| |||||||||||||||||||||||||||| ||||||| |||    
T  1270194 aataacatcaagaattcttcaagaataaagagcaaccaatctcaatgcactatttgccacaattcaagaaggtgtggctgaaaaataggaagtgaataaa 1270293  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaata 185  Q
    |||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  1270294 taaatcgtgcaattaaaacttgtcaactgtgtcttgaaaaatttttgatgctatttttctagagaaata 1270362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 29095698 - 29095530
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||| ||||||||||||||||||| |||||||||||    
T  29095698 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaataggaagtgaacaaa 29095599  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaata 185  Q
     | ||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||    
T  29095598 gatatcatgcaattaaaacttggcaactatgtcttgaaaattttttgatgctatttttctagagaaata 29095530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 34475922 - 34476099
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||  |||||||| ||||||||||||||||||| |||||||||||    
T  34475922 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatctgccccaattcaaggaggtgtggctgaaaaataggaagtgaacaaa 34476021  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    | |||||||||||||||||||| || || |||||||||||||||||||| ||||||||||||||||||| | ||||||    
T  34476022 tcaatcatgcaattaaaacttgtcagctttgtcttgaaaaattcttgatactatttttctagagaaatagccttttcc 34476099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 42480144 - 42480323
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||||||| |||||||  |||||||||||||||||||||| |||| |||    
T  42480144 aataacatcaagaattcttcaagaataaatagcagtcaattacaatgtattatttaccacaattcaatgaggtgtggctgaaaaatagaaaatgaataaa 42480243  T
Q  117 taaatcatgcaattaaaacttgccaactgtg--tcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    ||||| |||||||||||||||||   |||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  42480244 taaattatgcaattaaaacttgcatgctgtgtctcttgaaaaattcttgatgctatttttctagagaaataacattttcc 42480323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 20808970 - 20809147
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||| |||||||| || |||||||||||| ||| |||||||| ||    
T  20808970 aataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcattatttgccacaattcaaggagatgtggctgaaaactaggaagtgaacgaa 20809069  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    |||| |||| ||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||| |||||||    
T  20809070 taaaccatgtaattaaaacttgccacccgtatcttgaaaaattcttgatgctatttttctagagaaataaaattttcc 20809147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 9098742 - 9098579
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| | ||||   ||||||||||||||||||| ||||  |||||||||||    
T  9098742 aataacatcaagaattctttaagaataaagagcagccaatcacaatgcactatctgccat---tcaagaaggtgtggctgaataatacgaagtgaacaaa 9098646  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaa 183  Q
    |||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||    
T  9098645 taaatcatgcaattaaaacttgtcagctgtgttttgaaaaattcttgatgctatttttctagagaaa 9098579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 16254878 - 16255054
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||| ||||||||||||| ||||| |||||||||||    
T  16254878 aataacat-aagaattcttcaagaataaagatcagccaatcacaatgcactatttgccataatttaaggaggtgtggctgaataataggaagtgaacaaa 16254976  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    |||||||| ||||||||  ||| ||  ||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  16254977 taaatcatacaattaaattttgtcagttgtgtattgaaaaattcttgatgctatttttctagagaaatagcattttcc 16255054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 34807959 - 34808134
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||| ||| ||||||||||||||||||  ||||||| |||    
T  34807959 aataacatcaagaattcttcaaaaataaagagcagtcaatcacaatgtactatttatcataatttaaggaggtgtggctgaaaaatatgaagtgaataaa 34808058  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacatttt 192  Q
    ||||||||||||||||||||||| |  ||| ||||||||||    | |||||||||||||| ||||||||||||||    
T  34808059 taaatcatgcaattaaaacttgctagttgtctcttgaaaaaaaaattatgctatttttctaaagaaataacatttt 34808134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 34 - 193
Target Start/End: Original strand, 47550831 - 47550990
Alignment:
Q  34 ttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaa 133  Q
    ||||||||||||||||||| ||| |||||| ||||||| ||| |||| ||| ||||||| || |||||||| || |||||| ||||||||||||||||||    
T  47550831 ttcaagaataaagagcagcaaattacaatgcactatttgccacaatttaaggaggtgtgactaaaaaataggaaatgaacatataaatcatgcaattaaa 47550930  T
Q  134 acttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttc 193  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47550931 acttgccagctgtttcttgaaaaattcttgatgctatttttctagagaaataacattttc 47550990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 45010224 - 45010399
Alignment:
Q  18 ataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaat 117  Q
    |||||||||||||||||| |||||||||||||| ||||  | |||| | |||||  || |||||| ||||||||||||||||||||  ||||||||||||    
T  45010224 ataacatcaagaattctttaagaataaagagcatccaaatataatgcattatttgtcacaattca-gaaggtgtggctgaaaaataagaagtgaacaaat 45010322  T
Q  118 aaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    ||||||||||||||||| ||| ||  ||||| ||||||||||||| |||||||||||||||||||||||||| ||||    
T  45010323 aaatcatgcaattaaaatttgtcagatgtgttttgaaaaattctttatgctatttttctagagaaataacatcttcc 45010399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 24135778 - 24135893
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |  |||| ||| |||||||| ||||||||||||||||||| |||||||||||    
T  24135778 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaagtgaacaaa 24135875  T
Q  117 taaatcatgcaattaaaa 134  Q
    ||||||||||||||||||    
T  24135876 taaatcatgcaattaaaa 24135893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 41 - 194
Target Start/End: Complemental strand, 44714960 - 44714807
Alignment:
Q  41 ataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgcc 140  Q
    ||||||||||| ||||||||||| | ||||| ||| |||||||  || ||||||||||||||| ||| | || ||||||||||| |||||||||||||||    
T  44714960 ataaagagcagtcaatcacaatgcattatttgccacaattcaacgagatgtggctgaaaaataaaaaataaaaaaataaatcatacaattaaaacttgcc 44714861  T
Q  141 aactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    |||| | |||||||||||||||||| ||||||||||||| ||||||||||||||    
T  44714860 aactatatcttgaaaaattcttgatactatttttctagaaaaataacattttcc 44714807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 52 - 179
Target Start/End: Complemental strand, 2958832 - 2958710
Alignment:
Q  52 ccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtctt 151  Q
    |||||||||||| ||||||| ||| |||||||| |||||||||||||||||||  |||||||||||||||||||||||||     ||||| |||||||||    
T  2958832 ccaatcacaatgcactatttgccaaaattcaaggaggtgtggctgaaaaatagggagtgaacaaataaatcatgcaatta-----tgccagctgtgtctt 2958738  T
Q  152 gaaaaattcttgatgctatttttctaga 179  Q
    ||||||||||||||| ||||||||||||    
T  2958737 gaaaaattcttgatgttatttttctaga 2958710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 4194789 - 4194891
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||  || | || ||||||||||| |||||||||||    
T  4194789 aataacatcaagaattcttcaagaataaagaacagtcaatcacaatatactatttaccataattcaaagagatatgactgaaaaataggaagtgaacaaa 4194888  T
Q  117 taa 119  Q
    |||    
T  4194889 taa 4194891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 87 - 199
Target Start/End: Original strand, 4624438 - 4624543
Alignment:
Q  87 ggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataa 186  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||       || |||||||| ||||||||||||||||||||||||||||||     
T  4624438 ggtgtggctgaaaaataggaagtgaacaaataaatcatgcaattaaaact-------tgagtcttgaataattcttgatgctatttttctagagaaatag 4624530  T
Q  187 cattttccgtcca 199  Q
    |||||||| ||||    
T  4624531 cattttccttcca 4624543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 41647356 - 41647424
Alignment:
Q  123 atgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattt 191  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41647356 atgcaattaaaacttgtcaactgtgtcttgaaaaattcttgatgctatttttctagagaaatagcattt 41647424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 148
Target Start/End: Original strand, 48148828 - 48148939
Alignment:
Q  32 tcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaatta 131  Q
    |||||||||||||||| ||| ||||| ||||| ||||||| ||| |||    | || ||||||||||||||| |||||||| || ||||||||||||| |    
T  48148828 tcttcaagaataaagaccagtcaatcccaatgcactattttccacaat----ggagatgtggctgaaaaataaaaagtgaataa-taaatcatgcaataa 48148922  T
Q  132 aaacttgccaactgtgt 148  Q
    | ||||||||| |||||    
T  48148923 acacttgccaattgtgt 48148939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 41646599 - 41646652
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactattt 71  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||| |||||||    
T  41646599 aataacatca-gaattcttcaagaataaagagcagtcaatcacaatgcactattt 41646652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 148
Target Start/End: Complemental strand, 27143719 - 27143603
Alignment:
Q  32 tcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaatta 131  Q
    |||| ||||||||| ||| | ||||||||||||| ||||| | | |||| ||  |||||||  |||||||||| |||| |||||||| || || |||| |    
T  27143719 tctttaagaataaaaagccgtcaatcacaatgtattatttgctacaatttaaagaggtgtgattgaaaaataggaagtaaacaaatacataatacaataa 27143620  T
Q  132 aaacttgccaactgtgt 148  Q
    | |||||||||||||||    
T  27143619 acacttgccaactgtgt 27143603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 7167500 - 7167455
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaat 62  Q
    |||||| |||||||||||||||||||||||| ||| ||||||||||    
T  7167500 aataacgtcaagaattcttcaagaataaagaacagtcaatcacaat 7167455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 50663754 - 50663839
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaat 102  Q
    ||||||||||| |||| | ||||||||||||||||  ||| | |||| | ||||||||| |||||||| | ||||| |||||||||    
T  50663754 aataacatcaaaaattttacaagaataaagagcagtgaatgataatgcattatttaccacaattcaaggacgtgtgactgaaaaat 50663839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 29095675 - 29095717
Alignment:
Q  148 tcttgaaaaattcttgatgctatttttctagagaaataacatt 190  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||    
T  29095675 tcttgaagaattcttgatgttatttttctagagatataacatt 29095717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 31032850 - 31032892
Alignment:
Q  148 tcttgaaaaattcttgatgctatttttctagagaaataacatt 190  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||    
T  31032850 tcttgaagaattcttgatgatatttttctagagatataacatt 31032892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 133; Significance: 5e-69; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 24683099 - 24683275
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||| ||||||||| ||||||||||| |||||||||||    
T  24683099 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttgccacaattcaggaaggtgtgactgaaaaataggaagtgaacaaa 24683198  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttc 193  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  24683199 taaatcatgcaattaaaacttatcaagtgtgtcttgaaaaattcttgatactatttttctaaagaaataacattttc 24683275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 18375566 - 18375390
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||||||||||||||||||||||||||||| || | ||||||||||| ||||||| ||| |||||||| ||||||||||||||| ||| |||||||||||    
T  18375566 aataacatcaagaattcttcaagaataaagtgcggtcaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaa-taggaagtgaacaaa 18375468  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18375467 taaatcatgcaattaaaacttgccagttgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 18375390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 37674176 - 37674000
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| | |||||||  |||||||||||||||||| ||||| ||||||    
T  37674176 aataacatcaagaattcttcaagactaaagagcagtcaatcacaatgtactatttactacaattcaaagaggtgtggctgaaaaataaaaagttaacaaa 37674077  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttc 193  Q
    |||||||||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37674076 taaatcatgcaattaaaacttgtcacacgtgtcttgaaaaattcttgatgctatttttctagagaaatatcattttc 37674000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 41633240 - 41633416
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||| || ||| |||||||| ||||||||||||||||||| |||||||||||    
T  41633240 aataacattaagaattcttcaagaataaagagcagccaatcacaatgcactacttgccacaattcaaggaggtgtggctgaaaaataggaagtgaacaaa 41633339  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    ||||| ||| |||||||| ||| || || |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41633340 taaat-atgtaattaaaatttgtcagctttgtcttgaaaaattcttgatgctatttttctagagaaatagcattttcc 41633416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 49 - 196
Target Start/End: Original strand, 54358167 - 54358314
Alignment:
Q  49 cagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgt 148  Q
    ||||||||||||||| ||||||| ||| |||| |||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  54358167 cagccaatcacaatgcactatttgccacaatttaagggggtgtggctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttgccaactatgt 54358266  T
Q  149 cttgaaaaattcttgatgctatttttctagagaaataacattttccgt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  54358267 cttgaaaaattcttgatgctatttttctagagaaataacattttccgt 54358314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 17847713 - 17847541
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||||||| || |||||||||||| |||| ||||| |||||| |||| ||      ||| |||||||| ||||||| | |||||||||||||||||||||    
T  17847713 aataacataaaaaattcttcaagattaaaaagcagtcaatcataatgcacg-----ccacaattcaaggaggtgtgacagaaaaatagaaagtgaacaaa 17847619  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17847618 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttcgagagaaataacattttcc 17847541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 23348292 - 23348112
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaa---agtgaac 113  Q
    ||||||||||| ||||||| ||||||||||| ||  ||||||||||  |||||||||||||||||||| ||||||||||||||||||| |   |||||||    
T  23348292 aataacatcaataattctttaagaataaagaacactcaatcacaatacactatttaccataattcaaggaggtgtggctgaaaaataggaggaagtgaac 23348193  T
Q  114 aaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    ||||||||||||||||||||||||| |   ||| |||||||||||| ||||||||||||||||||||||||| ||||||||    
T  23348192 aaataaatcatgcaattaaaacttgtcggttgtttcttgaaaaattattgatgctatttttctagagaaatagcattttcc 23348112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 26179386 - 26179238
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||||||| ||||||||||||||||||||||||||||||||||| || |||||||| || |||||||| ||||||||||||||||||| |||||||||||    
T  26179386 aataacattaagaattcttcaagaataaagagcagccaatcacagtgcactatttaacacaattcaaggaggtgtggctgaaaaataggaagtgaacaaa 26179287  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgat 165  Q
    ||||||||  |||| ||||||| || |||||| || |||||||||||||    
T  26179286 taaatcatcaaattgaaacttgacagctgtgttttaaaaaattcttgat 26179238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 47 - 194
Target Start/End: Complemental strand, 4512309 - 4512161
Alignment:
Q  47 agcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgt 146  Q
    ||||| |||||||||| |||||||| ||| |||||||| || |||| ||||||||||| |||| ||||||||||| ||||||||||||||||||| |||     
T  4512309 agcagtcaatcacaatatactatttgccacaattcaaggagatgtgactgaaaaataggaagtaaacaaataaatgatgcaattaaaacttgccacctga 4512210  T
Q  147 gtcttgaaaaattcttgatgctat-ttttctagagaaataacattttcc 194  Q
    || ||||||||||||||||||||| ||||||||||||||||||||||||    
T  4512209 gtattgaaaaattcttgatgctattttttctagagaaataacattttcc 4512161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 33 - 194
Target Start/End: Complemental strand, 47839102 - 47838942
Alignment:
Q  33 cttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaa 132  Q
    ||||||||||||||||||| ||| ||||||||||||||| ||| |||| ||| ||||||||| |||||||||||| |||||||| | |||||||||||||    
T  47839102 cttcaagaataaagagcagtcaaccacaatgtactatttgccacaatttaaggaggtgtggccgaaaaatagaaaatgaacaaaaacatcatgcaattaa 47839003  T
Q  133 aacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    | ||  ||| |||||||||| ||||||||||||||||||||| |||||||||| ||| ||||    
T  47839002 atctcaccagctgtgtcttg-aaaattcttgatgctatttttatagagaaatagcatgttcc 47838942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 77 - 193
Target Start/End: Original strand, 41878599 - 41878715
Alignment:
Q  77 aattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttct 176  Q
    ||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||  | |||||||||||||||||||||||||||||||    
T  41878599 aattcaataaggtgtggctgaaaaataggaagtaaacaaataaatcatgcaattaaaacttgtcagttatgtcttgaaaaattcttgatgctatttttct 41878698  T
Q  177 agagaaataacattttc 193  Q
    | | ||||| |||||||    
T  41878699 aaataaatagcattttc 41878715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 47 - 194
Target Start/End: Complemental strand, 54021391 - 54021241
Alignment:
Q  47 agcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaa---ttaaaacttgccaac 143  Q
    ||||||||||||||||| ||||| | ||| |||| ||| |||||||| ||||||||||||||| |||||||||| ||   ||   |||||||||| || |    
T  54021391 agcagccaatcacaatgcactatgtgccacaatttaaggaggtgtggttgaaaaatagaaagtaaacaaataaagcaattaaaaattaaaacttgtcagc 54021292  T
Q  144 tgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    | | |||| ||||||||||||||||||||||||||||||||||||||||||    
T  54021291 tttatcttaaaaaattcttgatgctatttttctagagaaataacattttcc 54021241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 47281712 - 47281588
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttacca---taatt-caagaaggtgtggctgaaaaatagaaagtgaa 112  Q
    ||||||||||||||||||||||||||||||| |  | |||||||||| ||||||| |||   ||||| |||| |||||||| |||||||||| |||||||    
T  47281712 aataacatcaagaattcttcaagaataaagaacgacaaatcacaatgcactatttgccacattaatttcaaggaggtgtggttgaaaaataggaagtgaa 47281613  T
Q  113 caaataaatcatgcaattaaaactt 137  Q
    |||||||||||||||||||||||||    
T  47281612 caaataaatcatgcaattaaaactt 47281588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 109 - 196
Target Start/End: Complemental strand, 41497977 - 41497888
Alignment:
Q  109 tgaacaaataaatcatgcaattaaaacttgccaactgtgt--cttgaaaaattcttgatgctatttttctagagaaataacattttccgt 196  Q
    |||||||||||||||||||||||||||||  |||||||||  |||||| |||| |||||||||||||| |||||||||| ||||||||||    
T  41497977 tgaacaaataaatcatgcaattaaaacttatcaactgtgtgtcttgaataatttttgatgctatttttttagagaaatagcattttccgt 41497888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 41878344 - 41878398
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactattt 71  Q
    |||||||||| |||||||||| ||||||||| ||||||||||||||| |||||||    
T  41878344 aataacatcatgaattcttcatgaataaagatcagccaatcacaatgcactattt 41878398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 52726030 - 52726072
Alignment:
Q  152 gaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  52726030 gaaaaattcttgatgctatttttctagagaaatagcattttcc 52726072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 4098534 - 4098576
Alignment:
Q  148 tcttgaaaaattcttgatgctatttttctagagaaataacatt 190  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||    
T  4098534 tcttgaagaattcttgatgttatttttctagagatataacatt 4098576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 18375543 - 18375585
Alignment:
Q  148 tcttgaaaaattcttgatgctatttttctagagaaataacatt 190  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||    
T  18375543 tcttgaagaattcttgatgttatttttctagagatataacatt 18375585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 4098532 - 4098483
Alignment:
Q  136 ttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaata 185  Q
    ||||||||| |||| || |||||||||  |||||||||||||||||||||    
T  4098532 ttgccaactatgtcgtggaaaattctttgtgctatttttctagagaaata 4098483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 47282226 - 47282259
Alignment:
Q  159 tcttgatgctatttttctagagaaataacatttt 192  Q
    ||||||||||||||||||||||||||| ||||||    
T  47282226 tcttgatgctatttttctagagaaatagcatttt 47282259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 4392021 - 4391844
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||| ||| ||| |||||||| || |||||||||||||||| |||||||||||    
T  4392021 aataacatcaagaattcttcaagaataaagagcagccaattacaatgcactgtttgccacaattcaaggagctgtggctgaaaaataggaagtgaacaaa 4391922  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  4391921 taaattatgcaattaaaacttgccagctgtgtcttgaaaaattcttgatgctatttttctagagaaattgcattttcc 4391844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 37094087 - 37093912
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||| | | |||||||| ||||||| ||||||||||| |||||||||||    
T  37094087 aataacatcaacaattcttcaagaataaagagcagtcaatcacattgtactatttgcaacaattcaaggaggtgtgactgaaaaataggaagtgaacaaa 37093988  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacatttt 192  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37093987 taaattatgcaattaaaacttgtcaactgtgtcttgaaaaattcttgatgctatttttctagaaaaataacatttt 37093912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 32891197 - 32891374
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| |||||||| |||||||||| ||| |||| |||||||||||    
T  32891197 aataacatcaagaattcttcaagaataaaaagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaagataggaagtgaacaaa 32891296  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    |||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||    
T  32891297 taaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattgttgatgctatttttctagataaatagcattttcc 32891374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 8692531 - 8692708
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| ||| |||||||| | ||||||| ||||||||||||||||| |||    
T  8692531 aataacatcaagaattcttcaagaataaatagcatccaatcataatgtactatttgccacaattcaaggaagtgtggcagaaaaatagaaagtgaataaa 8692630  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    |||||||||||||||||| ||| || ||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  8692631 taaatcatgcaattaaaatttgtcagctgtgtcttgaaagattcttgatgctatttttttagagaaataacattttcc 8692708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 34286617 - 34286793
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||| |||| |||||||||||| ||||||||||||| ||| ||||||| ||| |||| | ||||||||||||||||||||| || ||||||||    
T  34286617 aataacatcaataattattcaagaataaa-agcagccaatcacgatgcactatttgccacaattaatgaaggtgtggctgaaaaataggaaatgaacaaa 34286715  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    |||||||||||||||||| ||| ||  |||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  34286716 taaatcatgcaattaaaatttgtcagttgtgtcttgaaaaaattttgatgctatttttctagagaaataacattttcc 34286793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 3456775 - 3456949
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||||||| | |||||||||||||||||||||||| || |||||||| ||||||| ||| |||||||| ||||||| ||||||||||| |||||||||||    
T  3456775 aataacattacgaattcttcaagaataaagagcagtcactcacaatgcactatttgccacaattcaaggaggtgtgactgaaaaataggaagtgaacaaa 3456874  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    |||||||||||||||||||||| |   ||||||   ||||||||||||||||||||||||||| ||||| ||||||||    
T  3456875 taaatcatgcaattaaaacttgtcggttgtgtc---aaaaattcttgatgctatttttctagaaaaatagcattttcc 3456949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 228046 - 228223
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||||||||||||||| |||||||||||||| ||  ||||||||||| ||||||||||| |||||||| ||||||| ||||||| |||||||||||||||    
T  228046 aataacatcaagaatttttcaagaataaagaacaatcaatcacaatgcactatttaccacaattcaaggaggtgtgactgaaaagtagaaagtgaacaaa 228145  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    || |||||||||||||||||||  |  |||||||||||||| | || ||| |||||||||||| ||||| ||||||||    
T  228146 tatatcatgcaattaaaacttgtaagttgtgtcttgaaaaaattttaatgttatttttctagaaaaatagcattttcc 228223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 56 - 194
Target Start/End: Original strand, 5481414 - 5481552
Alignment:
Q  56 tcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaa 155  Q
    |||||||| | ||||| ||| ||||||   || ||||||||||||||| ||||||||||||||||||||||| |||||| || ||||||||||||| |||    
T  5481414 tcacaatgcattatttgccacaattcatagagatgtggctgaaaaataaaaagtgaacaaataaatcatgcagttaaaatttaccaactgtgtcttaaaa 5481513  T
Q  156 aattcttgatgctatttttctagagaaataacattttcc 194  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  5481514 aattcttgatgctatttttctagagaaataatattttcc 5481552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 17 - 167
Target Start/End: Original strand, 28434224 - 28434374
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||  ||||||||| || ||||||||||||||||| |||||| ||||||||||| |||| |||||| |||| ||| |||||||||| |||| |||    
T  28434224 aataacattgagaattctttaaaaataaagagcagccaattacaatgcactatttaccacaatttaagaagatgtgactgtaaaatagaaaatgaataaa 28434323  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgc 167  Q
    |||||||||||||||||||| || |||||| |||  |||||||||||||||    
T  28434324 taaatcatgcaattaaaactcgctaactgtatctaaaaaaattcttgatgc 28434374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 38614359 - 38614231
Alignment:
Q  17 aataacatcaagaattcttc---aagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaac 113  Q
    ||||||||||||||||||||   |||||||||||||  |||||||||||| |||| || ||| ||||||||||| |||||||||||||||| |||| |||    
T  38614359 aataacatcaagaattcttcttcaagaataaagagcgcccaatcacaatgcactaattgccacaattcaagaagatgtggctgaaaaataggaagtaaac 38614260  T
Q  114 aaataaatcatgcaattaaaacttgccaa 142  Q
    |||||||||||||||||||||||| ||||    
T  38614259 aaataaatcatgcaattaaaacttaccaa 38614231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 11739395 - 11739270
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||||||||||||||||||||| |||||  ||||| |||| ||| ||| ||| |||||||| ||||||||||||||||||| | |||||||||    
T  11739395 aataacatcaagaattcttcaagaataaaaagcaggtaatcataatgcactgtttgccacaattcaaggaggtgtggctgaaaaataggaggtgaacaaa 11739296  T
Q  117 taaatcatgcaattaaaacttgccaa 142  Q
    ||||| ||||||||||||||| ||||    
T  11739295 taaattatgcaattaaaacttcccaa 11739270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 31644661 - 31644812
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||            | ||||| |||||||||| |||||||||||    
T  31644661 aataacatcaataattcttcaagaataaagagcagccaatcacaatgcactatttacc------------gatgtggttgaaaaataggaagtgaacaaa 31644748  T
Q  117 taaatcatgcaattaaaacttgccaa--ctgtgtcttgaaaaattcttgatgctatttttctag 178  Q
    |||| |||||||||||||||| ||||   ||||||||| |||||||||||| ||||||||||||    
T  31644749 taaaccatgcaattaaaacttaccaattgtgtgtcttgcaaaattcttgatactatttttctag 31644812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 41326624 - 41326486
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||||||||| ||  ||||||||||||||||||||||||||||||||| ||||||  || |||||||| ||||||||||||||||||| |||| ||||||    
T  41326624 aataacatcacgatctcttcaagaataaagagcagccaatcacaatgtgctatttgacacaattcaaggaggtgtggctgaaaaataggaagtaaacaaa 41326525  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaa 155  Q
    || |  ||||||| || ||||||||||||| ||| ||||    
T  41326524 tacacgatgcaataaacacttgccaactgtatctagaaa 41326486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 77 - 174
Target Start/End: Original strand, 40925918 - 40926015
Alignment:
Q  77 aattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctattttt 174  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||  |||||||||||||||||||||||||| ||||    
T  40925918 aattcaaagaggtgtggctgaaaaataggaagtgaacaaataaatcatacaattaaaacttgtcagatgtgtcttgaaaaattcttgatgctactttt 40926015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 29223488 - 29223607
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||| |||||||||||||||| ||||| |||||| ||| ||||||| ||||||| ||| |||||||| ||||||| ||||||||||  ||||| |||||    
T  29223488 aataatatcaagaattcttcaa-aataa-gagcagtcaaccacaatgcactatttgccacaattcaaggaggtgtgactgaaaaataagaagtgtacaaa 29223585  T
Q  117 taaatcatgcaattaaaacttg 138  Q
    ||||||||||||||||||||||    
T  29223586 taaatcatgcaattaaaacttg 29223607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 35672485 - 35672345
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||||||| ||||||| |||||||||||||||||| ||||||||||| |||||||| |  |||| ||| |  ||| | | || ||||| |||||||||||    
T  35672485 aataacattaagaatttttcaagaataaagagcagtcaatcacaatgcactatttatcgcaatttaaggaaatgttg-taaacaataggaagtgaacaaa 35672387  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaat 158  Q
    |||||||||||||||||| ||  |||||||||||| ||||||    
T  35672386 taaatcatgcaattaaaatttatcaactgtgtcttcaaaaat 35672345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 6614367 - 6614289
Alignment:
Q  72 accataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtct 150  Q
    |||| |||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||    
T  6614367 accacaattcaaggaggtgtgcctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttgtcgactgtgtct 6614289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 121 - 194
Target Start/End: Original strand, 42148957 - 42149030
Alignment:
Q  121 tcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    |||||||||||||| ||  ||  |||||||||||||||||||||| ||||||||||||||||||| | ||||||    
T  42148957 tcatgcaattaaaatttatcagttgtgtcttgaaaaattcttgatactatttttctagagaaatagcgttttcc 42149030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 43141563 - 43141519
Alignment:
Q  150 ttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  43141563 ttgaagaattcttgatgctatttttctagagaaataacattttcc 43141519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 146
Target Start/End: Complemental strand, 16517078 - 16516963
Alignment:
Q  31 ttcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaatt 130  Q
    ||||| ||||||||||||||| |||||| |||  |||  || | | ||| || | || ||| |||||| |||||| ||||||||||||||||||| ||||    
T  16517078 ttctttaagaataaagagcagtcaatcataattcactgcttgcaacaatacacggagatgttgctgaataatagagagtgaacaaataaatcatgaaatt 16516979  T
Q  131 aaaacttgccaactgt 146  Q
    ||||||||||| ||||    
T  16516978 aaaacttgccagctgt 16516963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 42148899 - 42148956
Alignment:
Q  35 tcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtg 92  Q
    ||||||||||| ||||  |||||||||||||||||||  ||||||||||| |||||||    
T  42148899 tcaagaataaatagcactcaatcacaatgtactatttgacataattcaaggaggtgtg 42148956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 148 - 191
Target Start/End: Original strand, 4391998 - 4392041
Alignment:
Q  148 tcttgaaaaattcttgatgctatttttctagagaaataacattt 191  Q
    ||||||| ||||||||||| |||||||||||||| |||||||||    
T  4391998 tcttgaagaattcttgatgttatttttctagagatataacattt 4392041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 228069 - 228027
Alignment:
Q  148 tcttgaaaaattcttgatgctatttttctagagaaataacatt 190  Q
    ||||||||||||||||||| |||||||||||||| ||| ||||    
T  228069 tcttgaaaaattcttgatgttatttttctagagatatatcatt 228027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 8692554 - 8692512
Alignment:
Q  148 tcttgaaaaattcttgatgctatttttctagagaaataacatt 190  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||    
T  8692554 tcttgaagaattcttgatgttatttttctagagatataacatt 8692512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 32891220 - 32891178
Alignment:
Q  148 tcttgaaaaattcttgatgctatttttctagagaaataacatt 190  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||    
T  32891220 tcttgaagaattcttgatgttatttttctagagatataacatt 32891178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 23992125 - 23991949
Alignment:
Q  18 ataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaat 117  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| |||||||| |||||||||||||||||||||||||||||||     
T  23992125 ataacatcaagaattcttcaagaataaagagcagcctatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagaaagtgaacaaaa 23992026  T
Q  118 aaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    | ||||||||||||||||||| ||  |||||||||||||||||||||| |||| |||||||||||||| ||||||||    
T  23992025 atatcatgcaattaaaacttgtcagttgtgtcttgaaaaattcttgatactatgtttctagagaaatagcattttcc 23991949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 27425929 - 27425773
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||||||| | ||||| ||| |||||||| || ||||| |||||||||| |||||||||||    
T  27425929 aataacatcaagaattcttaaagaataaagaacagtcaatcacaatgcattatttgccacaattcaaggagttgtggttgaaaaataggaagtgaacaaa 27425830  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttt 173  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27425829 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattgttgatgctatttt 27425773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 22326881 - 22327001
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||||||||||||||||| ||||||| | ||||||||||||||||||| ||| |||||| | ||||||| |||||||||||||||||||||||    
T  22326881 aataacatcaagaattcttcaagaagaaagagccgtcaatcacaatgtactatttgccacaattcagggaggtgtgactgaaaaatagaaagtgaacaaa 22326980  T
Q  117 taaatcatgcaattaaaactt 137  Q
    |||||||||||||||||||||    
T  22326981 taaatcatgcaattaaaactt 22327001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 35 - 194
Target Start/End: Original strand, 42195418 - 42195577
Alignment:
Q  35 tcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaa 134  Q
    ||||| || ||||||||  |||| ||||| ||||||||||| |||||||| ||||||| ||||||||||   ||||||||||||||||||||||||||||    
T  42195418 tcaaggattaagagcagttaatctcaatgcactatttaccacaattcaaggaggtgtgtctgaaaaataaggagtgaacaaataaatcatgcaattaaaa 42195517  T
Q  135 cttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    |||   |  ||| |||| |||||||||||||| |||||||||||||||||||||||||||    
T  42195518 ctttttagttgtatcttaaaaaattcttgatgttatttttctagagaaataacattttcc 42195577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 8307548 - 8307723
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||||||||||||||| || |||||||||||  || |||||| |||| ||||||  ||| ||||||||   |||||||| |||||||| |||||||||||    
T  8307548 aataacatcaagaattttttaagaataaagacgagtcaatcataatgcactattagccacaattcaag---gtgtggctcaaaaataggaagtgaacaaa 8307644  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaa-ttcttgatgctatttttctagagaaataacattttcc 194  Q
    ||||||||||| |||||| ||||||  |||||||||||||| || | |||||||||||||| |||||||| ||||||||    
T  8307645 taaatcatgcagttaaaatttgccagttgtgtcttgaaaaatttgtcgatgctatttttcttgagaaatatcattttcc 8307723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 17611865 - 17612005
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||||||||||||||||||||||| || ||||||| |||| | ||||| ||| |||||||| || ||||||| |||||||| ||||||| |||    
T  17611865 aataacatcaagaattcttcaagaataaagaacaaccaatcataatgaattatttgccacaattcaaggagatgtggctaaaaaataggaagtgaataaa 17611964  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaa 157  Q
    |||||||| ||||||||||||| ||  |||||||| |||||    
T  17611965 taaatcatacaattaaaacttgtcagttgtgtcttaaaaaa 17612005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 35 - 194
Target Start/End: Original strand, 25686406 - 25686563
Alignment:
Q  35 tcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaat---aaatcatgcaatta 131  Q
    ||||||||||||| ||  |||||| |||||||||||||||| |||| ||| ||||||||||| ||||||| |||| |||||||    |||||| |||| |    
T  25686406 tcaagaataaagaacaatcaatcataatgtactatttaccacaatttaaggaggtgtggctggaaaataggaagtaaacaaattaataatcatacaatca 25686505  T
Q  132 aaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    ||||||| | |     ||||||||||||||| || |||||||| || ||||||||||||||||    
T  25686506 aaacttgtcga-----tcttgaaaaattcttaatactatttttgtaaagaaataacattttcc 25686563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 41405875 - 41405797
Alignment:
Q  32 tcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtg 110  Q
    ||||||||||||||||| || |  |||||||| ||||||| ||| ||| |||| |||| ||| |||||||||| |||||    
T  41405875 tcttcaagaataaagaggagtcggtcacaatgcactatttgccacaatacaaggaggtatggttgaaaaatagtaagtg 41405797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 10485300 - 10485369
Alignment:
Q  87 ggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaa 156  Q
    ||||| |||||||||||   ||||||| ||||||||||||  |||||||||| || |||||||| |||||    
T  10485300 ggtgttgctgaaaaataaggagtgaacgaataaatcatgctgttaaaacttgacagctgtgtctggaaaa 10485369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 7646950 - 7646773
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||||||||||| || |||||||||||||||||||||||| ||||||| ||| |||||||| | ||||| ||||||||||| || ||||||||    
T  7646950 aataacatcaagaattctttaaaaataaagagcagccaatcacaatgcactatttgccacaattcaaggatgtgtgactgaaaaataggaaatgaacaaa 7646851  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    |||||||||||||||||||||||||  ||||||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  7646850 taaatcatgcaattaaaacttgccagatgtgtcttgaaaaattcctgatactatttttctagagaaatagcattttcc 7646773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 17 - 180
Target Start/End: Original strand, 25935531 - 25935694
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    |||||||| ||||||| ||||||||||||||||| | ||||| ||||||||||||  || |||| ||| |||||||||||||||||||||||||||  ||    
T  25935531 aataacattaagaattattcaagaataaagagcatctaatcataatgtactatttgtcacaatttaaggaggtgtggctgaaaaatagaaagtgaaagaa 25935630  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagag 180  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25935631 taaatcatgtaattaaaacttgccagctgtgtcttgaaaaattcttgatgctatttttctagag 25935694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 12607230 - 12607123
Alignment:
Q  23 atcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatc 122  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||| ||| |||| ||| ||||||| |||||||||||||||||||||||||||||    
T  12607230 atcaagaattcttcaagaataaagagcagtcaatcacagtgcactatttgccacaatttaaggaggtgtgactgaaaaatagaaagtgaacaaataaatc 12607131  T
Q  123 atgcaatt 130  Q
    ||||||||    
T  12607130 atgcaatt 12607123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 32 - 167
Target Start/End: Complemental strand, 29487676 - 29487541
Alignment:
Q  32 tcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaatta 131  Q
    |||| |||||||||||| || |||||||| || ||||||| ||| |||| ||  |||||||||||||||||||  ||||||||||||||||||||||| |    
T  29487676 tcttaaagaataaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggctgaaaaatagggagtgaacaaataaatcatgcaatca 29487577  T
Q  132 aaacttgccaactgtgtcttgaaaaattcttgatgc 167  Q
    | |||| |||||||||||| ||||||||||||||||    
T  29487576 acacttaccaactgtgtctggaaaaattcttgatgc 29487541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 106 - 194
Target Start/End: Original strand, 17366934 - 17367016
Alignment:
Q  106 aagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    ||||||||||||||  ||||||||||||||||||     ||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  17366934 aagtgaacaaataatgcatgcaattaaaacttgc-----gtgtcttgaaaaatt-ttgatgctatttttctagagaaatagcattttcc 17367016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 12607107 - 12607030
Alignment:
Q  118 aaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctattttt-ctagagaaataacattttcc 194  Q
    ||||||||||||||||||||  ||| |||||||| ||||||||||||| |||||||| ||||||||| ||||||||||    
T  12607107 aaatcatgcaattaaaacttatcaattgtgtcttaaaaaattcttgatactatttttcctagagaaacaacattttcc 12607030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 29636994 - 29637081
Alignment:
Q  33 cttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaa 120  Q
    |||| |||||||||||||| |||||||||   ||||||| ||| ||| |||| ||||   ||||||||||||||||||||||||||||    
T  29636994 cttctagaataaagagcagtcaatcacaactaactatttgccacaatacaaggaggtaaagctgaaaaatagaaagtgaacaaataaa 29637081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 28898482 - 28898438
Alignment:
Q  93 gctgaaaaatagaaagtgaacaaataaatcatgcaattaaaactt 137  Q
    |||| |||||||  |||||||||||||||||||||||||||||||    
T  28898482 gctgtaaaatagggagtgaacaaataaatcatgcaattaaaactt 28898438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 194
Target Start/End: Original strand, 3835318 - 3835348
Alignment:
Q  164 atgctatttttctagagaaataacattttcc 194  Q
    |||||||||||||||||||||||||||||||    
T  3835318 atgctatttttctagagaaataacattttcc 3835348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 492689 - 492865
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||  || |||||||| ||||||||||||||||||| || ||||||||    
T  492689 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgcacaatttgtcacaattcaaggaggtgtggctgaaaaataggaaatgaacaaa 492788  T
Q  117 taaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttc 193  Q
    ||||| |||||||||||||||| |    ||||||||||||| | |||||||||||||| ||||||||||||||||||    
T  492789 taaattatgcaattaaaacttgactgtcgtgtcttgaaaaaattttgatgctatttttttagagaaataacattttc 492865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 492712 - 492670
Alignment:
Q  148 tcttgaaaaattcttgatgctatttttctagagaaataacatt 190  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||    
T  492712 tcttgaagaattcttgatgttatttttctagagatataacatt 492670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 559 - 642
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaa 101  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||  || |||| ||| ||||||||||||||||    
T  559 aataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcactattt-gcacaatttaaggaggtgtggctgaaaaa 642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 8519 - 8602
Alignment:
Q  17 aataacatcaagaattcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaa 101  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||  || |||| ||| ||||||||||||||||    
T  8519 aataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcactattt-gcacaatttaaggaggtgtggctgaaaaa 8602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0339 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 13378 - 13442
Alignment:
Q  129 ttaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 194  Q
    ||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  13378 ttaaaacttaccatctgtgtcttgaaaa-ttcttgatgctatttttctagagaaatatcattttcc 13442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 614 - 507
Alignment:
Q  31 ttcttcaagaataaagagcagccaatcacaatgtactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaatt 130  Q
    |||||||||||||||||| |||||||||||||    |  ||  || ||| || || |||||  ||||||||||  |||||||||||||||||||||| ||    
T  614 ttcttcaagaataaagagtagccaatcacaattcggtgcttgacacaatacacgatggtgttactgaaaaataagaagtgaacaaataaatcatgcagtt 515  T
Q  131 aaaacttg 138  Q
    ||| ||||    
T  514 aaagcttg 507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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