View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5939_low_19 (Length: 375)

Name: NF5939_low_19
Description: NF5939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5939_low_19
NF5939_low_19
[»] chr8 (13 HSPs)
chr8 (25-366)||(2048047-2048387)
chr8 (177-364)||(2038806-2038993)
chr8 (154-366)||(10769455-10769667)
chr8 (177-366)||(2034726-2034915)
chr8 (154-366)||(2029808-2030020)
chr8 (154-366)||(1948013-1948225)
chr8 (154-325)||(2051982-2052153)
chr8 (25-113)||(2059298-2059386)
chr8 (176-366)||(2059002-2059192)
chr8 (230-366)||(2055798-2055934)
chr8 (25-85)||(2035028-2035085)
chr8 (29-59)||(2039149-2039179)
chr8 (285-366)||(2030903-2030984)
[»] chr4 (1 HSPs)
chr4 (239-320)||(48904878-48904959)
[»] chr2 (4 HSPs)
chr2 (229-318)||(28734894-28734983)
chr2 (253-318)||(28742051-28742116)
chr2 (247-318)||(28699412-28699483)
chr2 (257-308)||(28782875-28782926)


Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 25 - 366
Target Start/End: Complemental strand, 2048387 - 2048047
Alignment:
Q  25 tatactttgtaattcatccatagcatgaaatagaagaaacgacatcatatttctagttcatgtcataatcttgtggaattgatgaataaatataccacaa 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2048387 tatactttgtaattcatccatagcatgaaatagaagaaacgacatcatatttctagttcatgtcata-tcttgtggaattgatgaataaatataccacaa 2048289  T
Q  125 ccaattaaccaagttcattcaaatatttgttttttcttccacattgtcccgttcaaatcctgtaatgtgtaagagcagaagtaccatccaatccnnnnnn 224  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||          
T  2048288 ccaactaaccaagttcattcaaatatttgttttttcttccacattgtccagttcaaatcctgtaatgtgtaagagcagaagtaccatccaatcctttttt 2048189  T
Q  225 nacaaagtaggttacatagtctgcaactgtggtttctctgtatttaggaggattgtcttctgataatagttctttcataggtccatagagctttgaagat 324  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2048188 tacaaagtaggttacatagtctgcaactgtggtttctctgtatttaggaggattgtcttctgataatagttctttcataggtccatagagctttgaagat 2048089  T
Q  325 gacctattacctgtagagaaaaagcttgctacagatattctt 366  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2048088 gacctattacctgtagagaaaaagcttgctacagatattctt 2048047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 177 - 364
Target Start/End: Complemental strand, 2038993 - 2038806
Alignment:
Q  177 tcaaatcctgtaatgtgtaagagcagaagtaccatccaatccnnnnnnnacaaagtaggttacatagtctgcaactgtggtttctctgtatttaggagga 276  Q
    ||||||| |||||||||||||||||||||||||||| |||||       |||||||| | || |||||| ||||||||||||||||||||||||||||||    
T  2038993 tcaaatcttgtaatgtgtaagagcagaagtaccatctaatcctttttctacaaagtacgctagatagtcagcaactgtggtttctctgtatttaggagga 2038894  T
Q  277 ttgtcttctgataatagttctttcataggtccatagagctttgaagatgacctattacctgtagagaaaaagcttgctacagatattc 364  Q
    ||||||||||||||||| || || || ||||||||||||||||| ||||||| || |||||| |||||||||| ||||||||||||||    
T  2038893 ttgtcttctgataatagatcctttattggtccatagagctttgaggatgaccaatgacctgtggagaaaaagcatgctacagatattc 2038806  T

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Target: chr8; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 154 - 366
Target Start/End: Complemental strand, 10769667 - 10769455
Alignment:
Q  154 ttttttcttccacattgtcccgttcaaatcctgtaatgtgtaagagcagaagtaccatccaatccnnnnnnnacaaagtaggttacatagtctgcaactg 253  Q
    |||||||||||||||||    ||||||||| |||||||||||||||||||||||||||| | |||        |||| |||| ||||||||| |||||||    
T  10769667 ttttttcttccacattgcttagttcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgcttcaaaataggctacatagtcagcaactg 10769568  T
Q  254 tggtttctctgtatttaggaggattgtcttctgataatagttctttcataggtccatagagctttgaagatgacctattacctgtagagaaaaagcttgc 353  Q
     ||||||||||||| | |||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||| ||| ||  ||||||| | |||    
T  10769567 aggtttctctgtatatgggaggattgtcttctgataatagttcctttataggtccatagagctttgaggatgacctatgaccggtgcagaaaaaacatgc 10769468  T
Q  354 tacagatattctt 366  Q
     ||||||||||||    
T  10769467 aacagatattctt 10769455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 177 - 366
Target Start/End: Complemental strand, 2034915 - 2034726
Alignment:
Q  177 tcaaatcctgtaatgtgtaagagcagaagtaccatccaatccnnnnnnnacaaagtaggttacatagtctgcaactgtggtttctctgtatttaggagga 276  Q
    ||||||| |||||||||||||||||||||||||||| | |||        ||||||| | |||||| || | ||| || |||||||||||||||||||||    
T  2034915 tcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttttttcaaagtaagctacataatcagaaaccgttgtttctctgtatttaggagga 2034816  T
Q  277 ttgtcttctgataatagttctttcataggtccatagagctttgaagatgacctattacctgtagagaaaaagcttgctacagatattctt 366  Q
    |||||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||  ||||||||| ||| ||||||||||||    
T  2034815 ttgtcttctgataatagttcctttataggtccatagagctttgaggatgacctaatacctgtgcagaaaaagcatgccacagatattctt 2034726  T

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Target: chr8; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 154 - 366
Target Start/End: Complemental strand, 2030020 - 2029808
Alignment:
Q  154 ttttttcttccacattgtcccgttcaaatcctgtaatgtgtaagagcagaagtaccatccaatccnnnnnnnacaaagtaggttacatagtctgcaactg 253  Q
    |||||||||| ||| ||||  ||||||||| |||||||||||||||||||||||||||| | |||         |||||||| | || | || |||||||    
T  2030020 ttttttcttctacactgtctagttcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgcattaaagtaggctgcaaaatcagcaactg 2029921  T
Q  254 tggtttctctgtatttaggaggattgtcttctgataatagttctttcataggtccatagagctttgaagatgacctattacctgtagagaaaaagcttgc 353  Q
    |||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| |||| ||||   ||||| |||||||||| |||    
T  2029920 tggtttctctgtatttgggaggattgttttctgataatagttccttcataggtccatagagctttgacgatggcctaaggcctgtggagaaaaagcatgc 2029821  T
Q  354 tacagatattctt 366  Q
     ||||||||||||    
T  2029820 aacagatattctt 2029808  T

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Target: chr8; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 154 - 366
Target Start/End: Original strand, 1948013 - 1948225
Alignment:
Q  154 ttttttcttccacattgtcccgttcaaatcctgtaatgtgtaagagcagaagtaccatccaatccnnnnnnnacaaagtaggttacatagtctgcaactg 253  Q
    |||||||||||||| || |  ||||||||| |||||||||||||||||||||||||||| | |||         |||||||| | |||| || |||||||    
T  1948013 ttttttcttccacactgcctagttcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgctttaaagtaggctgcataatcagcaactg 1948112  T
Q  254 tggtttctctgtatttaggaggattgtcttctgataatagttctttcataggtccatagagctttgaagatgacctattacctgtagagaaaaagcttgc 353  Q
    |||||||||| ||||| | |||||| | ||||||||||||||| ||||||||||||||||||||||| |||| ||||  |||||| || ||||||| |||    
T  1948113 tggtttctctatatttggaaggattcttttctgataatagttccttcataggtccatagagctttgacgatggcctaagacctgttgaaaaaaagcatgc 1948212  T
Q  354 tacagatattctt 366  Q
     ||||||||||||    
T  1948213 aacagatattctt 1948225  T

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Target: chr8; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 154 - 325
Target Start/End: Complemental strand, 2052153 - 2051982
Alignment:
Q  154 ttttttcttccacattgtcccgttcaaatcctgtaatgtgtaagagcagaagtaccatccaatccnnnnnnnacaaagtaggttacatagtctgcaactg 253  Q
    |||||||| ||||||||    ||||||||| |||||||||||||||||||||||||||| | |||         |||||||| |||||| || ||||| |    
T  2052153 ttttttctgccacattgcttagttcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgctcgaaagtaggctacataatcagcaacag 2052054  T
Q  254 tggtttctctgtatttaggaggattgtcttctgataatagttctttcataggtccatagagctttgaagatg 325  Q
      |||||||||||||| |||||||||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  2052053 aagtttctctgtatttgggaggattgtcttctgatagcagttccttcataggtccatagagctttgaagatg 2051982  T

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Target: chr8; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 2059386 - 2059298
Alignment:
Q  25 tatactttgtaattcatccatagcatgaaatagaagaaacgacatcatatttctagttcatgtcataatcttgtggaattgatgaataa 113  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||  |||||||||||||||||||||||||||    
T  2059386 tatactttgtaattcatccatagcatgaaatagaagaaaccacatcaaagttctagttcacatcataatcttgtggaattgatgaataa 2059298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 176 - 366
Target Start/End: Complemental strand, 2059192 - 2059002
Alignment:
Q  176 ttcaaatcctgtaatgtgtaagagcagaagtaccatccaatccnnnnnnnacaaagtaggttacatagtctgcaactgtggtttctctgtatttaggagg 275  Q
    |||||||| ||| |||||||||||||||||||||||| | ||          |||| ||| |||||| || ||||| |  |||||||||||||| |||||    
T  2059192 ttcaaatcatgtgatgtgtaagagcagaagtaccatctagtctttttgctcgaaagcaggctacataatcagcaacagaagtttctctgtatttgggagg 2059093  T
Q  276 attgtcttctgataatagttctttcataggtccatagagctttgaagatgacctattacctgtagagaaaaagcttgctacagatattctt 366  Q
    ||||||||||||||||||||| ||||| ||||||||||| ||||||||||   |    ||||| |||||||||| ||| ||||||||||||    
T  2059092 attgtcttctgataatagttccttcattggtccatagagttttgaagatgctttgagtcctgtggagaaaaagcatgcaacagatattctt 2059002  T

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Target: chr8; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 230 - 366
Target Start/End: Complemental strand, 2055934 - 2055798
Alignment:
Q  230 agtaggttacatagtctgcaactgtggtttctctgtatttaggaggattgtcttctgataatagttctttcataggtccatagagctttgaagatgacct 329  Q
    |||||| |||||| || ||||| || |||||| |||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||   |    
T  2055934 agtaggctacataatcagcaacagtagtttctttgtatttaggaggattgtcttctgataacagttccttcattggtccatagagctttgaggatgcttt 2055835  T
Q  330 attacctgtagagaaaaagcttgctacagatattctt 366  Q
    |   || || |||||||||| ||| ||||||||||||    
T  2055834 aagtcccgtcgagaaaaagcatgcaacagatattctt 2055798  T

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Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 2035085 - 2035028
Alignment:
Q  25 tatactttgtaattcatccatagcatgaaatagaagaaacgacatcatatttctagttcat 85  Q
    |||||||| ||||||||||||||||||||||   |||||| ||| ||||||||||||||||    
T  2035085 tatactttttaattcatccatagcatgaaat---agaaaccacaccatatttctagttcat 2035028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 59
Target Start/End: Complemental strand, 2039179 - 2039149
Alignment:
Q  29 ctttgtaattcatccatagcatgaaatagaa 59  Q
    |||||||||||||||||||||||||||||||    
T  2039179 ctttgtaattcatccatagcatgaaatagaa 2039149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 366
Target Start/End: Complemental strand, 2030984 - 2030903
Alignment:
Q  285 tgataatagttctttcataggtccatagagctttgaagatgacctattacctgtagagaaaaagcttgctacagatattctt 366  Q
    ||||||||||||||| || ||| ||||||||| |||  ||| ||||  |||||  |||||||||| ||| ||||||||||||    
T  2030984 tgataatagttcttttattggtacatagagctctgacaatggcctaagacctggggagaaaaagcatgcaacagatattctt 2030903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 239 - 320
Target Start/End: Original strand, 48904878 - 48904959
Alignment:
Q  239 catagtctgcaactgtggtttctctgtatttaggaggattgtcttctgataatagttctttcataggtccatagagctttga 320  Q
    |||||||| ||| |||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||| ||||    
T  48904878 catagtctccaattgtggtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttga 48904959  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 318
Target Start/End: Original strand, 28734894 - 28734983
Alignment:
Q  229 aagtaggttacatagtctgcaactgtggtttctctgtatttaggaggattgtcttctgataatagttctttcataggtccatagagcttt 318  Q
    ||||||| |||||| || ||||  ||||||||||| ||| | ||||| |||||||||||||||| |||| | ||||||||||| ||||||    
T  28734894 aagtaggctacataatcagcaaacgtggtttctctatatctgggagggttgtcttctgataataattctgttataggtccataaagcttt 28734983  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 28742051 - 28742116
Alignment:
Q  253 gtggtttctctgtatttaggaggattgtcttctgataatagttctttcataggtccatagagcttt 318  Q
    ||||||||||| ||| | ||||| |||||||||||||| | |||||| ||||||||||||||||||    
T  28742051 gtggtttctctatatcttggagggttgtcttctgataaaatttcttttataggtccatagagcttt 28742116  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 318
Target Start/End: Original strand, 28699412 - 28699483
Alignment:
Q  247 gcaactgtggtttctctgtatttaggaggattgtcttctgataatagttctttcataggtccatagagcttt 318  Q
    ||||| ||||||||| ||||| | ||||| |||| ||||||||||| |||| | ||||||||||| ||||||    
T  28699412 gcaacagtggtttctttgtatctgggagggttgttttctgataataattctgttataggtccataaagcttt 28699483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 308
Target Start/End: Original strand, 28782875 - 28782926
Alignment:
Q  257 tttctctgtatttaggaggattgtcttctgataatagttctttcataggtcc 308  Q
    ||||| ||||||| |||||||||||||||||||| | |||||| ||||||||    
T  28782875 tttctttgtatttgggaggattgtcttctgataaaaattcttttataggtcc 28782926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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