View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5939_low_2 (Length: 582)
Name: NF5939_low_2
Description: NF5939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5939_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 12 - 565
Target Start/End: Original strand, 38126187 - 38126722
Alignment:
| Q |
12 |
tatactggtcattattgtttgtattcattgcttgtaatgcttgttactattagacataaaatccttttaacttatttatggttgattttatatatcacta |
111 |
Q |
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| T |
38126187 |
tatactagtcattattgtctgtattcattgcttgtaatgcttattactattagacataaaatccttttaatttatttatggttgattttat----cacta |
38126282 |
T |
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| Q |
112 |
tgtatgttgacagcttcaagaaagcagtgtaaagtgcagtctggttcaatttgagggttggcaaaggaaatatcaactgcaggatttattactagggatt |
211 |
Q |
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| T |
38126283 |
tgtatgttgacagcttcaagaaagcagtgtaaagtgcagtctggttcaatttgagggttggcaaaggaaatatcaactgcaggatttattactagggatt |
38126382 |
T |
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| Q |
212 |
acttcataggtctctatgtagatatagatcaggaaaactgacatatatgacaatatcttcatataaactagaagtagaagtttagacaaacagaaatata |
311 |
Q |
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| T |
38126383 |
acttcataggtctctatgtagatatagatcaggaaaactgacatatatgacaatatcttcatataaactagaagtagaagtttagacaaacagaaatata |
38126482 |
T |
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| Q |
312 |
gattgacatatgttgcttattttgcaagttttctactgtatacatggtcctcagatcaaacctataacatgtaggattagttcacttattttaatgcaca |
411 |
Q |
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| T |
38126483 |
gattgacatatgttgcttattttgcaagttttctactgtatacatggtccttagatcaaacctataacatgtaggattagttcacttattttaat----- |
38126577 |
T |
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| Q |
412 |
ttccttaagttttatttctccatatttttgagaaatatttattaaatatatgcatgccttattagttggaatgcatttgacactgattgtttaattattt |
511 |
Q |
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| T |
38126578 |
---------tcttatttctccatatttttgagaaatatttattaaatatatgcatgccttattagttggaatgcatttgacactgattgtttaattattt |
38126668 |
T |
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| Q |
512 |
ggttatatataggttctgcttttttctttgaatgatatatataggttctgcttg |
565 |
Q |
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| T |
38126669 |
ggttatatataggttctgcttttttctttgaatgatatatataggttctgcttg |
38126722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 399 - 456
Target Start/End: Original strand, 39708558 - 39708616
Alignment:
| Q |
399 |
attttaatgcacattccttaagttttatttctccata-tttttgagaaatatttattaa |
456 |
Q |
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| T |
39708558 |
attttaatgcacattccttaagtcttatttctccatattttttcagaaatgtttattaa |
39708616 |
T |
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