View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5939_low_22 (Length: 372)
Name: NF5939_low_22
Description: NF5939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5939_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 93 - 256
Target Start/End: Complemental strand, 40328763 - 40328600
Alignment:
| Q |
93 |
ataagcgcttacgtggtggaagggctgatgtattcatgcatctttccagaagcaccaaagagaataagggaaacttgagcatcacaaagaacacttattt |
192 |
Q |
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| T |
40328763 |
ataagcgcttacgtggtagaagggctgatgtattcatgcatctttccagaagcaccaaagagaataagggaaacttgagcatcacaaagaacacttattt |
40328664 |
T |
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| Q |
193 |
cctttgctttcttaaggattccattctttctctttgaataagtaacttgcctgttgcttgagtt |
256 |
Q |
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| T |
40328663 |
cctttgctttcttaaggattccattctttctctttgaataagtaacttgcctgttgcttgagtt |
40328600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 372
Target Start/End: Complemental strand, 40328512 - 40328484
Alignment:
| Q |
344 |
aaacaatgtttgagtatagagcatagagg |
372 |
Q |
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| T |
40328512 |
aaacaatgtttgagtatagagcatagagg |
40328484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 101 - 256
Target Start/End: Original strand, 10225378 - 10225533
Alignment:
| Q |
101 |
ttacgtggtggaagggctgatgtattcatgcatctttccagaagcaccaaagagaataagggaaacttgagcatcacaaagaacacttatttcctttgct |
200 |
Q |
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| T |
10225378 |
ttacgtggtagaagggctaatgtattcatgcatttttccagaaggagcaatgatgatagtggaaacttgagcatcacatagaacattgatttctttagct |
10225477 |
T |
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| Q |
201 |
ttcttaaggattccattctttctctttgaataagtaacttgcctgttgcttgagtt |
256 |
Q |
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| T |
10225478 |
ttctttaaaatcccgctttttctctttgaatatgtaacttgtctattgcttgagtt |
10225533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 8201190 - 8201113
Alignment:
| Q |
170 |
agcatcacaaagaacacttatttcctttgctttcttaaggattccattctttctctttgaataagtaacttgcctgtt |
247 |
Q |
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|||||||||||||||||| | ||| | ||||||||| | || |||||| |||||||||| || || ||||||||||| |
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| T |
8201190 |
agcatcacaaagaacactaagttcatgtgctttcttgaatataccattccttctctttgagtatgtcacttgcctgtt |
8201113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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