View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5939_low_28 (Length: 260)
Name: NF5939_low_28
Description: NF5939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5939_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 5545366 - 5545133
Alignment:
| Q |
18 |
cttttttaattaatcttcaacagttgtccatgtttcttgtatgcagaagttatttatcggattcatgcacataaagccatttatactctggactcgctgg |
117 |
Q |
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| T |
5545366 |
cttttttaattaatcttcaacagttgtccatgtttcttgtgtgcagaagttatttatcggattcatgcacataaagccattgatactccggactcgctgg |
5545267 |
T |
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| Q |
118 |
atatatcaatcctctataattaaacctgtaccatattgatgttttatctgtaaacaagtgttaatttcaatagttattaaacctggtttattcataatac |
217 |
Q |
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| T |
5545266 |
atatatcaatcctctaaaattaaacctgtactttattgatgttttatctgtaaacaggtgttaatttcaatagttattaaacctggtttattcataatac |
5545167 |
T |
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| Q |
218 |
atttgaaacagcaaccaaaaataataggagaatt |
251 |
Q |
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| T |
5545166 |
atttgaaacagcaaccaaaaataataggagaatt |
5545133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 5546096 - 5546012
Alignment:
| Q |
18 |
cttttttaattaatcttcaacagttgtccatgtttcttgtatgcagaagttatttatcggattcatgcacataaagccatttatactc |
105 |
Q |
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||||||||||||||| |||||||||||||||||||||||| | |||||||||| |||| ||| || | ||| ||||||| |||||| |
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| T |
5546096 |
cttttttaattaatcatcaacagttgtccatgtttcttgtgt---gaagttatttgtcggcttcgtgtagatagagccattgatactc |
5546012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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