View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5939_low_5 (Length: 509)
Name: NF5939_low_5
Description: NF5939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5939_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 18 - 504
Target Start/End: Original strand, 6780609 - 6781095
Alignment:
| Q |
18 |
aaatcgcatgtctataactaatttggaatctaaacacttaaaatatttcggaattttctttattgccttaggattttgaagagtgattatcagagttttt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6780609 |
aaatcgcatgtctataactaatttggaatctaaacacttaaaatatttcggaattttctttattgccttaggattttgaagagtgattatcggagttttt |
6780708 |
T |
|
| Q |
118 |
tgtacaaagaaactggcacatccaatatcacttggatttttggtctctttgacatgagatacccacaaagtttctttctttcttaagcctgcattcggtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6780709 |
tgtacaaagaaactggcacatccaatatcacttggatttttggtctctttgacatgagatacccacaaagttcctttctttcttaagcctgcattcggtt |
6780808 |
T |
|
| Q |
218 |
cttcatttgcatgcgttcctatgtgtggaaatgtatggacatgtctcttggtgattacggagaaatcaccgtttgggctttctgctccaatggaaaagaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
6780809 |
cttcatttgcatgcgttcctatgtgtggaaatgtatggacatgtctcttggtgattacggagaaattaccgtttgggctttctgctccaatggaaaag-a |
6780907 |
T |
|
| Q |
318 |
aaagatgcacta-nnnnnnnnngtgggatcattttctattaaattcattaatgtttaaaatgttcctatgatgttggaacattgttgatgccattattct |
416 |
Q |
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| T |
6780908 |
aaagatgcactattttttttttgtgggatcattttctattaaattcattaatgtttaaaatgttcctatgatgttggaacattgttgatgccattattct |
6781007 |
T |
|
| Q |
417 |
ttacaatttccctaacttcttgcagggctgatgtcgtcaagccaannnnnnngctctattgtccctcattacatcctgtagacctttg |
504 |
Q |
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| T |
6781008 |
ttacaatttccctaacttcttgcagagctgatgtcgtcaagccaatttttttgctctattgtccctcattacatcctgtagacctttg |
6781095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Complemental strand, 17486475 - 17486012
Alignment:
| Q |
18 |
aaatcgcatgtctataactaatttggaatctaaacacttaaaatatttcggaattttctttattgccttaggattttgaagagtgattatcagagttttt |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
17486475 |
aaatcgcatgtctataactaatttggaatctaaacacttaaaatatttcggaattttctttattgccttaggattttaaagagtgattatcggagttttt |
17486376 |
T |
|
| Q |
118 |
tgtacaaagaaactggcacatccaatatcacttggatttttggtctctttgacatgagatacccacaaagtttctttctttcttaagcctgcattcggtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17486375 |
tgtacaaagaaactggcacatccaatatcacttggatttttggtctctttgacatgagatacccacaaagtttctttctttcttaagcctgcattcggtt |
17486276 |
T |
|
| Q |
218 |
cttcatttgcatgcgttcctatgtgtggaaatgtatggacatgtctcttggtgattacggagaaatcaccgtttgggctttctgctccaatggaaaagaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | |
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| T |
17486275 |
----atttgcatgcgttcctatgtgtggaaatgtatggacatgtctcttggtgattacggagaaattatcgtttgggctttctgctccaatggaaaag-a |
17486181 |
T |
|
| Q |
318 |
aaagatgcacta-nnnnnnnnngtgggatcattttctattaaattcattaatgtttaaaatgttcctatgatgttggaacattgttgatgccattattct |
416 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17486180 |
aaagatgcactattttttttttgtgggatcattttctattaaattcattaatgtttaaaatgttcctatgatgttggaacattgttgatgccattattct |
17486081 |
T |
|
| Q |
417 |
ttacaatttccctaacttcttgcagggctgatgtcgtcaagccaannnnnnngctctattgtccctcat |
485 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
17486080 |
ttacaacttccctaacttcttgcagggctgatgtcgtcaagccaatttttttgctctattgtccctcat |
17486012 |
T |
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