View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5939_low_9 (Length: 478)
Name: NF5939_low_9
Description: NF5939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5939_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 89 - 463
Target Start/End: Original strand, 53676622 - 53676996
Alignment:
| Q |
89 |
gttattttttatagtgttggtctttatgtgtcttgttctattactcatttcaagcgcannnnnnnnnnnnnnnnnngataacgcttcctagattctagct |
188 |
Q |
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| T |
53676622 |
gttattttgtatagtattggtctttatgtgtcttgttctattactcatttcaagcatattctctctctctctctttgataacgcttcctagattctagct |
53676721 |
T |
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| Q |
189 |
gtgtttgttattcgaaggcttgaaaacaagaagtagattctttagactaaattatccacttacattgagaccctctccacataagaatgactcgactaaa |
288 |
Q |
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| T |
53676722 |
gtgtttgttattcgaaggcttgaaaacaagaagtagattctttagattaaattatccacttacattgagcccctctccatataagaatgattcgactaaa |
53676821 |
T |
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| Q |
289 |
caatcttcgacttttctaatatcaatttattatacactcggctatagaaactgacttaccctaaattttgcttcatgtcgttcccagcttacaatttaga |
388 |
Q |
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| T |
53676822 |
caatcttcgacttttctaatatcaattgattatacactcggctatagaaattaacttaccctaaattttgcttcatgtcgttcccggcttacaatttaga |
53676921 |
T |
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| Q |
389 |
atattttttagtgtaaacaaatgtccaactgattgtagcatgatgaaccgaaaatccattacatgttacttttag |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
53676922 |
atattttttagtgtaaacaaatgtccaactgattgtagcacgatgagccgaaaatccattacatgttacttttag |
53676996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 53676509 - 53676596
Alignment:
| Q |
1 |
agacaaatgtgtttgagcctaaatcctattagccatgatcatgacctataaagatcgtgtcctaattgcttctattcggctaacctta |
88 |
Q |
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| T |
53676509 |
agacaaatgtgtttgagcctaaatcctattagccatgatcatgacatataaagatcgtgtcctaattgctattattcggctaacctta |
53676596 |
T |
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