View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5940-Insertion-1 (Length: 1124)
Name: NF5940-Insertion-1
Description: NF5940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5940-Insertion-1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 790; Significance: 0; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 790; E-Value: 0
Query Start/End: Original strand, 9 - 963
Target Start/End: Original strand, 42742712 - 42743658
Alignment:
| Q |
9 |
gattgaaggggcaaggatatttggccctcttgatgaaaatgcagctatggatggagatgcctttacacccaattgtgttttaactctagtaatgtaagct |
108 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42742712 |
gattgaaggggcaaggatatttggtcctcttgatgaaaatgcagctatagatggagatgcctttacacccaattgtgttttaactctagtaatgtaagct |
42742811 |
T |
|
| Q |
109 |
acaggagacctacataatgtatgtatgaaattaagtatatgagtaatgaaaactataaaatcaaagcatggaaaaagttatggagcccatatcatgggag |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42742812 |
acaggagacctacataatgtatgtatgaaattaagtatatgagtaatgaaaactataaaatcaaatcatggaaaaagttatggagcccatatcatgggag |
42742911 |
T |
|
| Q |
209 |
aaaaattacttggtgtaattgacatatttaaaaatgacgtttccatctttaaagttaacatgtgaagcgggaagcacatgagcgtcaggtataatttcac |
308 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42742912 |
aaaaattacttggtgtaattgacatattttaaaatgacgtttccatctttaaagttaacatgtgaagcgggaagcacatgagcgtcaggtataatttcac |
42743011 |
T |
|
| Q |
309 |
cgcctgaaaaatcgtcattagccaaaatcattccaacagcacctacacgagaagcttccacacccttgtcaactctactattgttacctagaagacatac |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42743012 |
cgcctgaaaaatcgtcattagccaaaatcattccaacagcacctacacgagaagcttccacacccttgtcaactctactattgttacctagaagacatac |
42743111 |
T |
|
| Q |
409 |
caatatttttccctttgctttatgagaatcaagagatccattaatgcaaaggaggctgcataaaataaaataatcatttgaaaactatctctgaagagat |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42743112 |
caatatttttccctttgctttatgagaatcaagagacccattaatgcaaaggaggctgcataaaataaaataatcatttgaaaactatctctgaagagat |
42743211 |
T |
|
| Q |
509 |
tgaaaattatgaaactttagggtctttatgaaactttaggttacaagatcaagccgatagacaactacacaaaagttatttgagaaggtgtcaacttaaa |
608 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42743212 |
tgaaaatt--------------------tgttactttaggttacaagatcaagccgatggacaactacacaaaatttatttgagaaggtgtcaacttaaa |
42743291 |
T |
|
| Q |
609 |
atgaaagtattcttacgcctctaccgttgacatatgatcaaatttggcatcagcagcactaatcaatgggtacaacttatgaggcggtaattcatgctct |
708 |
Q |
| |
|
|||||||||||||||||| ||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42743292 |
atgaaagtattcttacgcttctcccgctgacacatgatcaaatttggcatcagcagcactaatcaatgggtacaacttatgaggcggtaattcatgctct |
42743391 |
T |
|
| Q |
709 |
gaaaggctctctccctaacaatgacaatttcaaac----aattaaacttac-----taaagaattaaaataacaaaggaaattagagatataaacaatat |
799 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42743392 |
gaaaggctctctccctaacaatgacaatttcaaacaattaattaaacttactaaattaaagaattaaaataacaaaggaaattagagatataaacaatat |
42743491 |
T |
|
| Q |
800 |
accttgaatattttcttgttaccaagaataacataacttgtgaaatctctatctattgtgcttgcagcaactgtgagcgtccaaggttccaggtttgcta |
899 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42743492 |
accttgaatattttcttgttaccaagaataacataacttgtgaaatctctatctattgtgcttgcagcaactgtgagcgtccaaggttccaggtttgcta |
42743591 |
T |
|
| Q |
900 |
cagtgttaggagaaggtcctgaatttcctccagcag-cacaacaatgatgt--gtggcaactgcatg |
963 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
42743592 |
cagtgttaggagaaggtcctgaatttcctccagcagccacaacaatgatgttgttggcaactgcatg |
42743658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 790; E-Value: 0
Query Start/End: Original strand, 9 - 963
Target Start/End: Original strand, 42752071 - 42753017
Alignment:
| Q |
9 |
gattgaaggggcaaggatatttggccctcttgatgaaaatgcagctatggatggagatgcctttacacccaattgtgttttaactctagtaatgtaagct |
108 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42752071 |
gattgaaggggcaaggatatttggtcctcttgatgaaaatgcagctatagatggagatgcctttacacccaattgtgttttaactctagtaatgtaagct |
42752170 |
T |
|
| Q |
109 |
acaggagacctacataatgtatgtatgaaattaagtatatgagtaatgaaaactataaaatcaaagcatggaaaaagttatggagcccatatcatgggag |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42752171 |
acaggagacctacataatgtatgtatgaaattaagtatatgagtaatgaaaactataaaatcaaatcatggaaaaagttatggagcccatatcatgggag |
42752270 |
T |
|
| Q |
209 |
aaaaattacttggtgtaattgacatatttaaaaatgacgtttccatctttaaagttaacatgtgaagcgggaagcacatgagcgtcaggtataatttcac |
308 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42752271 |
aaaaattacttggtgtaattgacatattttaaaatgacgtttccatctttaaagttaacatgtgaagcgggaagcacatgagcgtcaggtataatttcac |
42752370 |
T |
|
| Q |
309 |
cgcctgaaaaatcgtcattagccaaaatcattccaacagcacctacacgagaagcttccacacccttgtcaactctactattgttacctagaagacatac |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42752371 |
cgcctgaaaaatcgtcattagccaaaatcattccaacagcacctacacgagaagcttccacacccttgtcaactctactattgttacctagaagacatac |
42752470 |
T |
|
| Q |
409 |
caatatttttccctttgctttatgagaatcaagagatccattaatgcaaaggaggctgcataaaataaaataatcatttgaaaactatctctgaagagat |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42752471 |
caatatttttccctttgctttatgagaatcaagagacccattaatgcaaaggaggctgcataaaataaaataatcatttgaaaactatctctgaagagat |
42752570 |
T |
|
| Q |
509 |
tgaaaattatgaaactttagggtctttatgaaactttaggttacaagatcaagccgatagacaactacacaaaagttatttgagaaggtgtcaacttaaa |
608 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42752571 |
tgaaaatt--------------------tgttactttaggttacaagatcaagccgatggacaactacacaaaatttatttgagaaggtgtcaacttaaa |
42752650 |
T |
|
| Q |
609 |
atgaaagtattcttacgcctctaccgttgacatatgatcaaatttggcatcagcagcactaatcaatgggtacaacttatgaggcggtaattcatgctct |
708 |
Q |
| |
|
|||||||||||||||||| ||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42752651 |
atgaaagtattcttacgcttctcccgctgacacatgatcaaatttggcatcagcagcactaatcaatgggtacaacttatgaggcggtaattcatgctct |
42752750 |
T |
|
| Q |
709 |
gaaaggctctctccctaacaatgacaatttcaaac----aattaaacttac-----taaagaattaaaataacaaaggaaattagagatataaacaatat |
799 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42752751 |
gaaaggctctctccctaacaatgacaatttcaaacaattaattaaacttactaaattaaagaattaaaataacaaaggaaattagagatataaacaatat |
42752850 |
T |
|
| Q |
800 |
accttgaatattttcttgttaccaagaataacataacttgtgaaatctctatctattgtgcttgcagcaactgtgagcgtccaaggttccaggtttgcta |
899 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42752851 |
accttgaatattttcttgttaccaagaataacataacttgtgaaatctctatctattgtgcttgcagcaactgtgagcgtccaaggttccaggtttgcta |
42752950 |
T |
|
| Q |
900 |
cagtgttaggagaaggtcctgaatttcctccagcag-cacaacaatgatgt--gtggcaactgcatg |
963 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
42752951 |
cagtgttaggagaaggtcctgaatttcctccagcagccacaacaatgatgttgttggcaactgcatg |
42753017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 9 - 516
Target Start/End: Original strand, 42761531 - 42762047
Alignment:
| Q |
9 |
gattgaaggggcaaggatatttggccctcttgatgaaaatgcagctatggatggagatgcctttacacccaattgtgttttaactctagtaatgtaagct |
108 |
Q |
| |
|
|||||||||| | || ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42761531 |
gattgaagggtcgagtctatttggtcctcttgatgaaaatgcagctatagatggagatgcctttacacccaattgtgttttaactctagtaatgtaagct |
42761630 |
T |
|
| Q |
109 |
acaggagacctacataatgtatgtatgaaattaa--------gtatatgagtaatgaaaactataaaatcaaagcatggaaaaagttatggagcccatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| || |||| ||||||||||||||||| ||||||||||||||| | ||| ||| |
|
|
| T |
42761631 |
acaggagacctacataatgtatgtatgaaattaaaattctatgtatacgaataataaaaactataaaatcaaaatatggaaaaagttatgaaccccgtat |
42761730 |
T |
|
| Q |
201 |
catgggagaaaaattacttggtgtaattgacatatttaaaaatgacgtttccatctttaaagttaacatgtgaagcgggaagcacatgagcgtcaggtat |
300 |
Q |
| |
|
||| ||||||||||||||| |||| |||||| ||||||||||| | | ||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42761731 |
cataggagaaaaattactttgtgttattgacgtatttaaaaattaaatctccatctttaaagctaacatgtgaagcgggaagcacatgagcgtcatctat |
42761830 |
T |
|
| Q |
301 |
aatttcaccgcctgaaaaatcgtcattagccaaaatcattccaacagcacctacacgagaagcttccacacccttgtcaactctactattgttacctaga |
400 |
Q |
| |
|
||| |||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| |||| || |
|
|
| T |
42761831 |
aatctcaccgcctgaacccttatcattagccaaaatcattccaatagcacctacacgagaagcttccacacccttgtcaactctattactgtcacctcga |
42761930 |
T |
|
| Q |
401 |
agacataccaatatttttccctttgctttatgagaatcaagagatccattaatgcaaaggag-gctgcataaaataaaataatcatttgaaaactatctc |
499 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| | |||||||| ||||| | |||||| || || | ||||| ||||| |||||| ||||| |||| |
|
|
| T |
42761931 |
agacataccaatatttttccctttgccttatgtggatcaagagctccatgattgcaaaaaagaactaaaaaaaatgaaatagtcattttaaaacagtctc |
42762030 |
T |
|
| Q |
500 |
tgaagagattgaaaatt |
516 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
42762031 |
tgaggagattgaaaatt |
42762047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 789 - 965
Target Start/End: Original strand, 42762462 - 42762641
Alignment:
| Q |
789 |
ataaacaatataccttgaatattttcttgttaccaagaataacataacttgtgaaatctctatctattgtgcttgcagcaactgtgagcgtccaaggttc |
888 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42762462 |
ataaacaatataccttgagtatttttttgttaccaagaataacataacttgtgaaatctctatcaattgtgcttgcagcaactgtgagcgtccaaggttc |
42762561 |
T |
|
| Q |
889 |
caggtttgctacagtgttaggagaaggtcctgaatttcctccagcag-cacaacaatgatgt--gtggcaactgcatgaa |
965 |
Q |
| |
|
|| ||| | |||||| ||||| |||||||||||| ||||||| || |||||||||||||| ||||||||||||||| |
|
|
| T |
42762562 |
caagttggatacagtactaggaacaggtcctgaattacctccagaagccacaacaatgatgttgttggcaactgcatgaa |
42762641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 799 - 963
Target Start/End: Complemental strand, 42735019 - 42734852
Alignment:
| Q |
799 |
taccttgaatattttcttgttaccaagaataacataacttgtgaaatctctatctattgtgcttgcagcaactgtgagcgtccaaggttccaggtttgct |
898 |
Q |
| |
|
|||||||| |||||||||||||||||| | ||||||||||||||| |||||||| ||||||||||||||||||||||| |||| ||||||| ||||||| |
|
|
| T |
42735019 |
taccttgagtattttcttgttaccaagtacaacataacttgtgaagtctctatcaattgtgcttgcagcaactgtgaggatccacggttccatgtttgct |
42734920 |
T |
|
| Q |
899 |
acagtgttaggagaaggtcctgaatttcctccagcag-cacaacaatgatgt--gtggcaactgcatg |
963 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||| || ||||||||| |||| ||||||||||||| |
|
|
| T |
42734919 |
acagtgttagaagaaggtcctgaattacctccagaagccacaacaattatgttgttggcaactgcatg |
42734852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 637 - 793
Target Start/End: Original strand, 42762147 - 42762308
Alignment:
| Q |
637 |
gacatatgatcaaatttggcatcagcagcactaatcaatgggtacaacttatgaggcggtaattcatgctctgaaaggctctctccctaacaatgacaat |
736 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||| | ||| |
|
|
| T |
42762147 |
gacacatgatcaaatttgacatcagcagcacttatcaatgggtacaacttatgaggtggtaattcaagctctgaaaggctagctccctaacaataaaaat |
42762246 |
T |
|
| Q |
737 |
ttcaaac----aattaaacttactaaaga-attaaaataacaaaggaaattagagatataaa |
793 |
Q |
| |
|
||||||| |||||| ||||||||| | |||||||||||||||||| ||||||||||||| |
|
|
| T |
42762247 |
ttcaaacaagtaattaaccttactaaaaatattaaaataacaaaggaagttagagatataaa |
42762308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 42735962 - 42735852
Alignment:
| Q |
29 |
ttggccctcttgatgaaaatgcagctatggatggagatgcctttacacccaattgtgttttaactctagtaatgtaagctacaggagacctacataatgt |
128 |
Q |
| |
|
|||| |||||||||||||||| ||| || ||||||| || ||||| |||||||||||||||||||| |||||||| || |||||| ||||||||||||| |
|
|
| T |
42735962 |
ttgggcctcttgatgaaaatgaagccatagatggagttggctttatacccaattgtgttttaactcctgtaatgtatgccacaggaaacctacataatgt |
42735863 |
T |
|
| Q |
129 |
atgtatgaaat |
139 |
Q |
| |
|
||||||||||| |
|
|
| T |
42735862 |
atgtatgaaat |
42735852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 794 - 963
Target Start/End: Original strand, 42716861 - 42717033
Alignment:
| Q |
794 |
caatataccttgaatattttcttgttaccaagaataacataacttgtgaaatctctatctattgtgcttgcagcaactgtgagcgtccaaggttccaggt |
893 |
Q |
| |
|
||||||||||||| | |||| |||| |||||| ||||| |||| ||||| |||||||| ||||| |||||||||||||| | | ||| ||||||| || |
|
|
| T |
42716861 |
caatataccttgagtgttttgttgtcaccaagggtaacaaaactagtgaactctctatcaattgtacttgcagcaactgtaaacacccatggttccaagt |
42716960 |
T |
|
| Q |
894 |
ttgctacagtgttaggagaaggtcctgaatttcctccagcag-cacaacaatgatgt--gtggcaactgcatg |
963 |
Q |
| |
|
| | |||||| |||||| ||||||||||||||||||||||| ||||||||| |||| ||||||||||||| |
|
|
| T |
42716961 |
tggatacagtactaggagcaggtcctgaatttcctccagcagccacaacaattatgttattggcaactgcatg |
42717033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 795 - 890
Target Start/End: Original strand, 42769345 - 42769440
Alignment:
| Q |
795 |
aatataccttgaatattttcttgttaccaagaataacataacttgtgaaatctctatctattgtgcttgcagcaactgtgagcgtccaaggttcca |
890 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||| ||||| |||||||| |||| |||||||||||||||| || ||| ||||||| |
|
|
| T |
42769345 |
aatataccttgagtattttcttgttaccaagagtaacataactagtgaattctctatccgttgtacttgcagcaactgtgatcgaccacggttcca |
42769440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 201 - 443
Target Start/End: Complemental strand, 42735809 - 42735567
Alignment:
| Q |
201 |
catgggagaaaaattacttggtgtaattgacatatttaaaaatgacgtttccatctttaaagttaacatgtgaagcgggaagcacatgagcgtcaggtat |
300 |
Q |
| |
|
|||||||||||||||||||||| | |||| | || ||||||||| ||||||| ||| ||||||| |||||| |||||||| ||||| |||| ||| |
|
|
| T |
42735809 |
catgggagaaaaattacttggttttattggcgtaattaaaaatgtaacttccatcggtaacattaacatttgaagctggaagcacgtgagcatcagctat |
42735710 |
T |
|
| Q |
301 |
aatttcaccgcctgaaaaatcgtcattagccaaaatcattccaacagcacctacacgagaagcttccacacccttgtcaactctactattgttacctaga |
400 |
Q |
| |
|
|| ||| || ||||| ||| || |||| |||||||||| ||||||||| ||||||||||| | ||||| |||| | ||||||| | |||| | |
|
|
| T |
42735709 |
aacttctccccctgactccctctcaataaccaagatcattccaatagcacctactcgagaagcttctatgcccttttcaagtttactattttcaccttca |
42735610 |
T |
|
| Q |
401 |
agacataccaatatttttccctttgctttatgagaatcaagag |
443 |
Q |
| |
|
|||||||||||||||||||| | ||| ||||||| |||||||| |
|
|
| T |
42735609 |
agacataccaatatttttccatgtgccttatgaggatcaagag |
42735567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 325 - 375
Target Start/End: Original strand, 42716436 - 42716486
Alignment:
| Q |
325 |
attagccaaaatcattccaacagcacctacacgagaagcttccacaccctt |
375 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42716436 |
attagccaaaataattccaacagcacctacacgagcagcttccacaccctt |
42716486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 325 - 420
Target Start/End: Original strand, 42768796 - 42768891
Alignment:
| Q |
325 |
attagccaaaatcattccaacagcacctacacgagaagcttccacacccttgtcaactctactattgttacctagaagacataccaatatttttcc |
420 |
Q |
| |
|
|||||||||||||||||||||||||||| | | || ||||| ||||||||||||| |||| ||||| ||| ||||||| || | ||||||||| |
|
|
| T |
42768796 |
attagccaaaatcattccaacagcacctgccctagcagcttgcacacccttgtcagttctatcattgtcgcctcgaagacaaacaactatttttcc |
42768891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 9 - 492
Target Start/End: Complemental strand, 23041692 - 23041221
Alignment:
| Q |
9 |
gattgaaggggcaaggatatttggccctcttgatgaaaatgcagctatggatggagatgcctttacacccaattgtgttttaactctagtaatgtaagct |
108 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23041692 |
gattgaaggggcaaggatatttggtcctcttgatgaaaatgcagctatagatggagatgcctttacacccaattgtgttttaactctagtaatataagct |
23041593 |
T |
|
| Q |
109 |
acaggagacctacataatgtatgtatgaaattaagtatatgagtaatgaaaactataaaatcaaagcatggaaaaagttatggagcccatatcatgggag |
208 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
23041592 |
ataggagacctacataatgta------------agtatatgagtaatgaaaactataaaatcaaaggatggaaaaagttatggagcccatataatgggag |
23041505 |
T |
|
| Q |
209 |
aaaaattacttggtgtaattgacatatttaaaaatgacgtttccatctttaaagttaacatgtgaagcgggaagcacatgagcgtcaggtataatttcac |
308 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23041504 |
aaaaattacttggtgtaattgacatattttaaaatgacgtttccatctttaaagttaacatgtgaagcgggaagcacatgagcgtcagatataatttcac |
23041405 |
T |
|
| Q |
309 |
cgcctgaaaaatcgtcattagccaaaatcattccaacagcacctacacgagaagcttccacacccttgtcaactctactattgttacctagaagacatac |
408 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | |||||||| |||||||||| |||||||||| |
|
|
| T |
23041404 |
cgcctgaagcctcgtcattagccaaaatcattccaacagcacctactcgagaagcttctacaccctttttaactctaccattgttacctcgaagacatac |
23041305 |
T |
|
| Q |
409 |
caatatttttccctttgctttatgagaatcaagagatccattaatgcaaaggaggctgcataaaataaaataatcatttgaaaa |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||| ||||||||||||||||| |
|
|
| T |
23041304 |
caatatttttccctttgctttatgagaatcaagagatccattaatgcacaagaggctacataaaatgaaataatcatttgaaaa |
23041221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-124
Query Start/End: Original strand, 616 - 963
Target Start/End: Complemental strand, 23041170 - 23040816
Alignment:
| Q |
616 |
tattcttacgcctctaccgttgacatatgatcaaatttggcatcagcagcactaatcaatgggtacaacttatgaggcggtaattcatgctctgaaaggc |
715 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
23041170 |
tattcttacgcttctaccgttgacacatgatcaaatttggcatcagcagcactaatcaatggatacaacttatgccgcggtagttcatgctctgaaaggc |
23041071 |
T |
|
| Q |
716 |
tctctccctaacaatgacaatttcaaacaattaa----acttactaaagaattaaaataacaaaggaaattagagatataaacaatataccttgaatatt |
811 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23041070 |
tctttccctaacaatgacagtttcaaacaattaattaaacttactaaagaattaaaataacaaaggaaattagagatataaacaatataccttgagtatt |
23040971 |
T |
|
| Q |
812 |
ttcttgttaccaagaataacataacttgtgaaatctctatctattgtgcttgcagcaactgtgagcgtccaaggttccaggtttgctacagtgttaggag |
911 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||| || ||||||||||||| ||| | |||||| ||||| |
|
|
| T |
23040970 |
ttcttgttaccaagaataacatagcttgtgaaatctcgatcaattgtgcttgcagcaactgtaagtgtccaaggttccaagttggatacagtactaggat |
23040871 |
T |
|
| Q |
912 |
aaggtcctgaatttcctccagcag-cacaacaatgatgt--gtggcaactgcatg |
963 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||| ||||||||||||| |
|
|
| T |
23040870 |
caggtcctgaatttcctccaccagacacaacaatgatgttgttggcaactgcatg |
23040816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 541 - 588
Target Start/End: Complemental strand, 23041214 - 23041167
Alignment:
| Q |
541 |
actttaggttacaagatcaagccgatagacaactacacaaaagttatt |
588 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
23041214 |
actttaggttacaagatcaagccgatagacaactacgcaaaagctatt |
23041167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 815 - 875
Target Start/End: Original strand, 37108171 - 37108231
Alignment:
| Q |
815 |
ttgttaccaagaataacataacttgtgaaatctctatctattgtgcttgcagcaactgtga |
875 |
Q |
| |
|
||||||||||||| ||||||||| | ||| |||||||| |||||||| ||| ||||||||| |
|
|
| T |
37108171 |
ttgttaccaagaacaacataactagggaactctctatccattgtgctggcaccaactgtga |
37108231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University