View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5940-Insertion-3 (Length: 533)
Name: NF5940-Insertion-3
Description: NF5940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5940-Insertion-3 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 8 - 533
Target Start/End: Complemental strand, 51846799 - 51846279
Alignment:
| Q |
8 |
atagatgccctttaatatatgtagtgttgtgcaaaactcattgttcaccgctaagctttgagaggatcattcatgaatacttcattgttggttcaagatg |
107 |
Q |
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| T |
51846799 |
atagatgccctttaatatatgtagtgttgtgcaaaactcattgttcaccgctaagctttgagaggatcattcatgaatacttcattgttggttcaagatg |
51846700 |
T |
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| Q |
108 |
ctgaatcaattgaattaattaatctttcctaggactgcaactctcacctacaaaagcaactgttacatactaagctagcatatgtcattgacattgacat |
207 |
Q |
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| T |
51846699 |
ctgaatcaattgaattaattaatctttcctaggactgcaactctcacctacaaaagcaactgttacatactaagctagcatat-----tgacattgacat |
51846605 |
T |
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| Q |
208 |
tgacataaaaattgatcatattcatctttaaacttgtaattcctctatcctcctaattgcttccttcatgttaagtcgttgttcagggttactttctgtg |
307 |
Q |
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| T |
51846604 |
tgacataaaaattgatcatattcatctttaaacttgtaattcctctatcctcctaattgcttccttcatgttaagtcgttgttcagggttactttctgtg |
51846505 |
T |
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| Q |
308 |
caagcagccccaatttgaagaagttgcaacatatgattaattgaatcttgattgtttgctgttaactctggatcaatcaattcagcttctcttctctcag |
407 |
Q |
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| T |
51846504 |
caagcagccccaatttgaagaagttgcaacatatgattaattgaatcttgattgtttgctgttaactctggatcaatcaattcagcttctcttctctcag |
51846405 |
T |
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| Q |
408 |
aaattgctgtgaacacccattgaacaacatcagtaccacctttaccattactgtgatattgagaagggaattttcctgtaatgatttcaagaatgatgat |
507 |
Q |
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| T |
51846404 |
aaattgctgtgaacacccattgaacaacatcagtaccacctttaccattactgtgatattgagaagggaattttcctgtaatgatttcaagaatgatgat |
51846305 |
T |
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| Q |
508 |
tccgagacaataaacatcggttttct |
533 |
Q |
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| T |
51846304 |
tccgagacaataaacatcggttttct |
51846279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 369 - 533
Target Start/End: Original strand, 18627242 - 18627406
Alignment:
| Q |
369 |
ttaactctggatcaatcaattcagcttctcttctctcagaaattgctgtgaacacccattgaacaacatcagtaccacctttaccattactgtgatattg |
468 |
Q |
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| T |
18627242 |
ttaactcaggatcaatcaattcagcttctcttctctcagaaattgctgtgaggacccattgaacaacatcggttccacctttaccgttactatgatactg |
18627341 |
T |
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| Q |
469 |
agaagggaattttcctgtaatgatttcaagaatgatgattccgagacaataaacatcggttttct |
533 |
Q |
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| T |
18627342 |
agaagggaattttcctgtaatgagttcaagaatgatgattccgagacaataaacatcggctttct |
18627406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 341
Target Start/End: Original strand, 18627120 - 18627214
Alignment:
| Q |
247 |
ttcctctatcctcctaattgcttccttcatgttaagtcgttgttcagggttactttctgtgcaagcagccccaatttgaagaagttgcaacatat |
341 |
Q |
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| T |
18627120 |
ttcctctatccttctaatagcttccttcatgtgtagtctttgttccggattgctttcagtacaagcagcaccaataaggagaagttgcagcatat |
18627214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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