View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5940-Insertion-4 (Length: 492)

Name: NF5940-Insertion-4
Description: NF5940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5940-Insertion-4
NF5940-Insertion-4
[»] chr2 (21 HSPs)
chr2 (8-492)||(16784968-16785452)
chr2 (52-139)||(32106772-32106859)
chr2 (73-139)||(787363-787429)
chr2 (131-180)||(15370243-15370292)
chr2 (36-102)||(43141865-43141931)
chr2 (37-125)||(10563545-10563633)
chr2 (49-128)||(32821816-32821895)
chr2 (134-180)||(1830143-1830189)
chr2 (46-100)||(3059286-3059340)
chr2 (36-102)||(35485911-35485977)
chr2 (49-115)||(36852479-36852545)
chr2 (36-106)||(39983336-39983406)
chr2 (49-134)||(3067357-3067442)
chr2 (39-96)||(6988112-6988169)
chr2 (131-180)||(22878199-22878248)
chr2 (118-179)||(26372648-26372709)
chr2 (52-129)||(33192212-33192289)
chr2 (45-138)||(43065424-43065517)
chr2 (36-140)||(1742004-1742108)
chr2 (45-97)||(25661110-25661162)
chr2 (45-129)||(40158721-40158805)
[»] scaffold0020 (1 HSPs)
scaffold0020 (31-126)||(159959-160054)
[»] chr5 (23 HSPs)
chr5 (49-180)||(10798344-10798475)
chr5 (49-180)||(11707062-11707193)
chr5 (49-105)||(14716477-14716533)
chr5 (45-134)||(2468434-2468524)
chr5 (36-102)||(37588370-37588436)
chr5 (49-102)||(11615508-11615561)
chr5 (49-106)||(16889742-16889799)
chr5 (45-129)||(2880530-2880614)
chr5 (140-180)||(14331476-14331516)
chr5 (137-180)||(34205348-34205391)
chr5 (70-128)||(11700362-11700420)
chr5 (45-115)||(17777912-17777982)
chr5 (36-102)||(37526209-37526275)
chr5 (48-102)||(37611225-37611279)
chr5 (48-102)||(37787955-37788009)
chr5 (36-129)||(10272414-10272507)
chr5 (45-102)||(15074759-15074816)
chr5 (49-102)||(17258893-17258946)
chr5 (69-126)||(17368973-17369030)
chr5 (53-102)||(28413294-28413343)
chr5 (36-101)||(36318768-36318833)
chr5 (45-102)||(40205084-40205141)
chr5 (36-100)||(26209425-26209489)
[»] chr1 (17 HSPs)
chr1 (46-129)||(3924628-3924711)
chr1 (53-124)||(26184759-26184830)
chr1 (133-179)||(15361814-15361860)
chr1 (143-180)||(15784909-15784946)
chr1 (36-101)||(45205062-45205127)
chr1 (132-180)||(32958739-32958787)
chr1 (36-128)||(44940335-44940426)
chr1 (51-122)||(45394124-45394195)
chr1 (130-180)||(6292592-6292642)
chr1 (56-102)||(43954055-43954101)
chr1 (45-102)||(219561-219618)
chr1 (46-127)||(6932946-6933027)
chr1 (45-102)||(7262528-7262585)
chr1 (131-180)||(33976279-33976328)
chr1 (48-129)||(35925696-35925777)
chr1 (131-180)||(41638228-41638277)
chr1 (47-115)||(12564496-12564564)
[»] chr4 (13 HSPs)
chr4 (51-129)||(54325020-54325098)
chr4 (45-115)||(6978959-6979029)
chr4 (36-102)||(7694020-7694086)
chr4 (49-140)||(14011241-14011332)
chr4 (49-128)||(21043219-21043298)
chr4 (49-96)||(35064862-35064909)
chr4 (46-100)||(18019976-18020030)
chr4 (45-123)||(29263373-29263451)
chr4 (49-115)||(55547041-55547107)
chr4 (49-134)||(18011878-18011963)
chr4 (130-179)||(19305026-19305075)
chr4 (45-102)||(24370963-24371020)
chr4 (45-81)||(32920431-32920467)
[»] chr3 (12 HSPs)
chr3 (49-127)||(30923883-30923961)
chr3 (47-128)||(9279310-9279391)
chr3 (49-118)||(13709817-13709886)
chr3 (36-129)||(34382936-34383029)
chr3 (36-138)||(24887258-24887359)
chr3 (37-102)||(237392-237457)
chr3 (36-140)||(36646354-36646458)
chr3 (49-140)||(41452530-41452621)
chr3 (36-98)||(14548735-14548797)
chr3 (45-103)||(30322029-30322087)
chr3 (49-129)||(27290884-27290964)
chr3 (67-115)||(30750025-30750073)
[»] scaffold0147 (1 HSPs)
scaffold0147 (70-175)||(12641-12746)
[»] chr8 (15 HSPs)
chr8 (131-177)||(10560148-10560194)
chr8 (45-134)||(5088855-5088944)
chr8 (131-180)||(14926902-14926951)
chr8 (75-140)||(30259147-30259212)
chr8 (36-95)||(29973075-29973134)
chr8 (49-115)||(11183552-11183618)
chr8 (36-102)||(31705079-31705145)
chr8 (131-180)||(7714343-7714392)
chr8 (71-140)||(10062113-10062182)
chr8 (49-102)||(30277255-30277308)
chr8 (49-106)||(42370367-42370424)
chr8 (131-180)||(43368620-43368669)
chr8 (49-101)||(4560509-4560561)
chr8 (132-180)||(4560604-4560652)
chr8 (51-115)||(14949875-14949939)
[»] chr7 (12 HSPs)
chr7 (40-102)||(24363611-24363673)
chr7 (40-106)||(40439052-40439118)
chr7 (45-100)||(39505959-39506014)
chr7 (49-115)||(4966163-4966229)
chr7 (131-173)||(31002808-31002850)
chr7 (45-134)||(20553106-20553195)
chr7 (49-134)||(33645939-33646023)
chr7 (49-126)||(39345478-39345555)
chr7 (140-180)||(1418529-1418569)
chr7 (49-140)||(5628538-5628629)
chr7 (131-179)||(12234810-12234858)
chr7 (36-116)||(44151476-44151556)
[»] chr6 (11 HSPs)
chr6 (48-134)||(32665665-32665751)
chr6 (53-134)||(34939755-34939836)
chr6 (45-129)||(2117406-2117490)
chr6 (51-115)||(3155185-3155248)
chr6 (55-139)||(34939526-34939610)
chr6 (48-115)||(30782137-30782204)
chr6 (46-100)||(5564140-5564194)
chr6 (142-180)||(29249505-29249543)
chr6 (49-115)||(31686360-31686426)
chr6 (130-180)||(33080498-33080548)
chr6 (132-180)||(7714042-7714090)
[»] scaffold0003 (1 HSPs)
scaffold0003 (45-129)||(306329-306413)
[»] scaffold0103 (1 HSPs)
scaffold0103 (110-169)||(51633-51690)


Alignment Details
Target: chr2 (Bit Score: 481; Significance: 0; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 8 - 492
Target Start/End: Complemental strand, 16785452 - 16784968
Alignment:
Q  8 ataaacaacttagttaagtgcttatcagataagttagaagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagact 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16785452 ataaacaacttagttaagtgcttatcagataagttagaagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagact 16785353  T
Q  108 tctcataaactgtttccataagatctcacaaatgcttatgacagtaaataagctcaactaagtcaatccaaactagtacttatcctctttcaataatgta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16785352 tctcataaactgtttccataagatctcacaaatgcttatgacagtaaataagctcaactaagtcaatccaaactagtacttatcctctttcaataatgta 16785253  T
Q  208 ctgtcaacgaacctgctagtttcaatcttctttcagcatcattaattcatagaagaaatgagttggagaatcttattcctgctcttatttttcaaagaat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16785252 ctgtcaacgaacctgctagtttcaatcttctttcagcatcattaattcatagaagaaatgagttggagaatcttattcctgctcttatttttcaaagaat 16785153  T
Q  308 ttgttgtcgaaaccatgtttgtgacctgtagaaattttctctgcatgttgccttaaagtggaaaatcataaattccagtttttcagttattttctagttt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16785152 ttgttgtcgaaaccatgtttgtgacctgtagaaattttctctgcatgttgccttaaagtggaaaatcataaattccagtttttcagttattttctagttt 16785053  T
Q  408 tgcctacactttctgtactttattttctcttaaaaaagaattgtgtctagctcatcattatgaaaccaaacgggattgtgatgtg 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16785052 tgcctacactttctgtactttattttctcttaaaaaagaattgtgtctagctcatcattatgaaaccaaacgggattgtaatgtg 16784968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 32106859 - 32106772
Alignment:
Q  52 tttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataagatctcacaaa 139  Q
    ||||||||| |||||||||||| ||||| | ||||| ||||||||||||| |||  | |||||| |||||| |||||| |||||||||    
T  32106859 tttcataagttatcctgaagagcttatgaacataatttgaaaacagcttacagatatgtcataagctgttttcataagttctcacaaa 32106772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 787363 - 787429
Alignment:
Q  73 gtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataagatctcacaaa 139  Q
    |||||||||||||| ||||||||||||||| ||| | |||||| |||||| |||||| |||||||||    
T  787363 gtttatggagataagctgaaaacagcttatggacatgtcataagctgttttcataagttctcacaaa 787429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 15370292 - 15370243
Alignment:
Q  131 tctcacaaatgcttatgacagtaaataagctcaactaagtcaatccaaac 180  Q
    ||||||||||||||||| ||||| |||||||||| |||||||||||||||    
T  15370292 tctcacaaatgcttatgccagtagataagctcaaataagtcaatccaaac 15370243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 43141865 - 43141931
Alignment:
Q  36 ataagttagaagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttat 102  Q
    ||||| || ||| |||||||||||| |||||||||||||||||||| ||||  |||||||| |||||    
T  43141865 ataagctataagatgttttcataagctatcctgaagagtttatggaaataaaatgaaaacaacttat 43141931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 10563633 - 10563545
Alignment:
Q  37 taagttagaagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttcca 125  Q
    ||||||| |||||||||||||||| ||| |||||||| ||| | | |||| ||||||| ||||||| ||| | |||||  |||||||||    
T  10563633 taagttataagttgttttcataagctatgctgaagagcttaagaaaataagctgaaaatagcttatggacatgtcataggctgtttcca 10563545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 32821816 - 32821895
Alignment:
Q  49 tgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataa 128  Q
    |||||||||||| |||||| ||||| |||| || |||| ||||||||||||||| ||| | ||||||  |||||| ||||    
T  32821816 tgttttcataagctatcctaaagagcttatagaaataaactgaaaacagcttatggacatgtcataagttgtttctataa 32821895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 1830143 - 1830189
Alignment:
Q  134 cacaaatgcttatgacagtaaataagctcaactaagtcaatccaaac 180  Q
    ||||| |||||||| |||||||||| ||||| |||||||||||||||    
T  1830143 cacaagtgcttatgtcagtaaataaactcaaataagtcaatccaaac 1830189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 3059340 - 3059286
Alignment:
Q  46 agttgttttcataagatatcctgaagagtttatggagataatctgaaaacagctt 100  Q
    ||||||||||||||| ||| ||  |||||||||||| |||| |||||||||||||    
T  3059340 agttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 3059286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 35485911 - 35485977
Alignment:
Q  36 ataagttagaagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttat 102  Q
    ||||| || |||||||||| ||||| ||||||||||||  |||||| || | |||||||||||||||    
T  35485911 ataagctataagttgtttttataagctatcctgaagagcctatggaaatgagctgaaaacagcttat 35485977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 36852479 - 36852545
Alignment:
Q  49 tgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataa 115  Q
    |||||||||||| |||| || |||| ||||||| |||||||||||| || |||||||| | ||||||    
T  36852479 tgttttcataagctatcttggagagcttatggaaataatctgaaaatagtttatagacatgtcataa 36852545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 39983336 - 39983406
Alignment:
Q  36 ataagttagaagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagac 106  Q
    ||||| || |||||||||||||||| ||||||| |||| | ||| | |||| ||||||| |||||||||||    
T  39983336 ataagctataagttgttttcataagctatcctggagagctaatgaaaataaactgaaaatagcttatagac 39983406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 3067442 - 3067357
Alignment:
Q  49 tgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataagatctc 134  Q
    |||||||||||| |||| ||||||||||||| | |||| || ||||| ||||||| || | | |||| |||||| |||||| ||||    
T  3067442 tgttttcataagctatcttgaagagtttatgaaaataagctaaaaacggcttatatacatattataagctgttttcataagctctc 3067357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 6988112 - 6988169
Alignment:
Q  39 agttagaagttgttttcataagatatcctgaagagtttatggagataatctgaaaaca 96  Q
    ||||| |||||||||||||||| |||| |||||||||||| || ||||  ||||||||    
T  6988112 agttataagttgttttcataagctatcttgaagagtttatagaaataagatgaaaaca 6988169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 22878199 - 22878248
Alignment:
Q  131 tctcacaaatgcttatgacagtaaataagctcaactaagtcaatccaaac 180  Q
    |||||||| |||||||| ||||  |||||||||| |||||||||||||||    
T  22878199 tctcacaagtgcttatgtcagtggataagctcaaataagtcaatccaaac 22878248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 26372709 - 26372648
Alignment:
Q  118 tgtttccataagatctcacaaatgcttatgacagtaaataagctcaactaagtcaatccaaa 179  Q
    ||||| || ||| ||||||||||||||||| ||| | |||||||||| | ||||||||||||    
T  26372709 tgttttcagaagttctcacaaatgcttatgtcagaagataagctcaaatgagtcaatccaaa 26372648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 33192212 - 33192289
Alignment:
Q  52 tttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataag 129  Q
    ||||||||| ||||||| |||| ||||  | |||| ||||||||||||||| ||  | ||||||||||||| ||||||    
T  33192212 tttcataagctatcctggagagcttataaatataagctgaaaacagcttatggatatgtcataaactgttttcataag 33192289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 43065517 - 43065424
Alignment:
Q  45 aagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataagatctcacaa 138  Q
    |||||||||||||||| |||| || |||| |||| || |||| |||||||||  |||| ||| | ||||||  ||||| |||||| ||||||||    
T  43065517 aagttgttttcataagttatcgtggagagcttattgaaataagctgaaaacaatttatggacatgtcataagttgttttcataagctctcacaa 43065424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 140
Target Start/End: Complemental strand, 1742108 - 1742004
Alignment:
Q  36 ataagttagaagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataagatctca 135  Q
    ||||| || ||| |||||||||||  |||| ||||||||||||||| ||||  |||| | |||||||  || | ||||||  |||||||||||| ||||     
T  1742108 ataagatataagctgttttcataatctatcatgaagagtttatggaaataagttgaagatagcttatgcacatgtcataagttgtttccataagctctcc 1742009  T
Q  136 caaat 140  Q
    |||||    
T  1742008 caaat 1742004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 25661110 - 25661162
Alignment:
Q  45 aagttgttttcataagatatcctgaagagtttatggagataatctgaaaacag 97  Q
    ||||| ||||| |||  |||||||||||| ||||||| |||||||||||||||    
T  25661110 aagttattttcgtaaactatcctgaagagcttatggaaataatctgaaaacag 25661162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 40158721 - 40158805
Alignment:
Q  45 aagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataag 129  Q
    |||||||||||||||| ||| ||| |||| ||||| |  ||| ||||||||| |||||| || | |||||| |||||| ||||||    
T  40158721 aagttgttttcataagttattctggagagcttatgtaattaagctgaaaacaacttataaacatgtcataagctgttttcataag 40158805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 126
Target Start/End: Complemental strand, 160054 - 159959
Alignment:
Q  31 atcagataagttagaagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccat 126  Q
    |||| |||||||| ||| |||||||||||| |||||| ||||| || |||| |||| |||||||| |||||||||| | |||||||||||||||||    
T  160054 atcatataagttataagatgttttcataagctatcctaaagagcttgtggaaataagctgaaaactgcttatagacatgtcataaactgtttccat 159959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 180
Target Start/End: Complemental strand, 10798475 - 10798344
Alignment:
Q  49 tgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataagatctcacaaatgcttatga 148  Q
    |||||| ||||| |||||||||||| | ||||| |||||||||||||||| |||  |||| || ||| |||||||||||| ||||||||| ||| |||      
T  10798475 tgtttttataagctatcctgaagagctgatggaaataatctgaaaacagcctatgaacttgtcgtaagctgtttccataaaatctcacaagtgcatatac 10798376  T
Q  149 cagtaaataagctcaactaagtcaatccaaac 180  Q
     |||| ||||||| || ||| |||||||||||    
T  10798375 tagtagataagctaaaataaatcaatccaaac 10798344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 180
Target Start/End: Original strand, 11707062 - 11707193
Alignment:
Q  49 tgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataagatctcacaaatgcttatga 148  Q
    |||||||||||| |||| || |||| || || | |||| ||||||||| |||||| || | |||||| || |||  ||||| |||| ||||||||| ||     
T  11707062 tgttttcataagctatcttgtagagcttttgaaaataagctgaaaacaacttataaacatgtcataatctattttgataagttctctcaaatgcttctgc 11707161  T
Q  149 cagtaaataagctcaactaagtcaatccaaac 180  Q
    |||||||||||||||| |||||||||||||||    
T  11707162 cagtaaataagctcaaataagtcaatccaaac 11707193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 14716533 - 14716477
Alignment:
Q  49 tgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttataga 105  Q
    |||||||||||| ||||| | |||||||||||||||||  |||||||||||||||||    
T  14716533 tgttttcataagttatcccgtagagtttatggagataaattgaaaacagcttataga 14716477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 2468434 - 2468524
Alignment:
Q  45 aagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcat-aaactgtttccataagatctc 134  Q
    ||||| |||| ||||| ||||||||||||||||||||  ||| || |||||||||||| ||| | |||| ||| |||||||||||| ||||    
T  2468434 aagttctttttataagctatcctgaagagtttatggaagtaagctcaaaacagcttatggacatgtcataaaattgtttccataagttctc 2468524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 37588436 - 37588370
Alignment:
Q  36 ataagttagaagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttat 102  Q
    ||||| || |||||||||||||||| ||| ||| |||| ||||||| |||| |||||||||||||||    
T  37588436 ataagctataagttgttttcataagttattctggagagcttatggaaataagctgaaaacagcttat 37588370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 11615508 - 11615561
Alignment:
Q  49 tgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttat 102  Q
    ||||||||||||||||||| | ||| ||||||| |||| |||||||||||||||    
T  11615508 tgttttcataagatatccttatgagcttatggaaataagctgaaaacagcttat 11615561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 16889742 - 16889799
Alignment:
Q  49 tgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagac 106  Q
    |||||||||||| ||| ||  |||||||||||| |||||||||||||| |||||||||    
T  16889742 tgttttcataagctatgctagagagtttatggaaataatctgaaaacaacttatagac 16889799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 2880614 - 2880530
Alignment:
Q  45 aagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataag 129  Q
    |||||||||| ||||| ||| | |||||||||||||| |||| ||||||||| |||||  || | |||| | |||||||||||||    
T  2880614 aagttgtttttataagctattcagaagagtttatggaaataagctgaaaacaccttatgaacatatcattagctgtttccataag 2880530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 14331476 - 14331516
Alignment:
Q  140 tgcttatgacagtaaataagctcaactaagtcaatccaaac 180  Q
    |||||||||||||| |||||||||| |||||||||||||||    
T  14331476 tgcttatgacagtagataagctcaaataagtcaatccaaac 14331516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 34205348 - 34205391
Alignment:
Q  137 aaatgcttatgacagtaaataagctcaactaagtcaatccaaac 180  Q
    ||||||||||| ||||||||||| |||| |||||||||||||||    
T  34205348 aaatgcttatgtcagtaaataagttcaaataagtcaatccaaac 34205391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 11700420 - 11700362
Alignment:
Q  70 agagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataa 128  Q
    |||||||||| | |||||||||||||||||||| ||| | ||||||  |||||||||||    
T  11700420 agagtttatgaaaataatctgaaaacagcttatggacatgtcataagttgtttccataa 11700362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 17777912 - 17777982
Alignment:
Q  45 aagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataa 115  Q
    |||||||||||||||| ||||||| |||| |||| || |||| || |||| |||||| |||||| ||||||    
T  17777912 aagttgttttcataagttatcctggagagcttatcgaaataaactaaaaaaagcttaaagacttgtcataa 17777982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 37526275 - 37526209
Alignment:
Q  36 ataagttagaagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttat 102  Q
    ||||| || |||||||||||||||| | | ||| |||| ||||||| |||| |||||||||||||||    
T  37526275 ataagctataagttgttttcataagttgttctggagagcttatggaaataagctgaaaacagcttat 37526209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 37611279 - 37611225
Alignment:
Q  48 ttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttat 102  Q
    ||||||||||||| |||| || |||| ||||||| |||| |||||||||||||||    
T  37611279 ttgttttcataagctatcttggagagcttatggaaataacctgaaaacagcttat 37611225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 37788009 - 37787955
Alignment:
Q  48 ttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttat 102  Q
    ||||||||||||| |||| || |||| ||||||| |||| |||||||||||||||    
T  37788009 ttgttttcataagctatcttggagagcttatggaaataacctgaaaacagcttat 37787955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 129
Target Start/End: Complemental strand, 10272507 - 10272414
Alignment:
Q  36 ataagttagaagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataag 129  Q
    ||||| || ||||||||||||||||  ||| || |||||||||| | |||| ||||||||| |||| |||| | ||||||  |||||| |||||    
T  10272507 ataagctataagttgttttcataagccatcttggagagtttatgaaaataagctgaaaacaacttacagacatgtcataagttgtttctataag 10272414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 15074816 - 15074759
Alignment:
Q  45 aagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttat 102  Q
    |||||||||||||||| ||| ||| | || ||||||| |||| |||||||||||||||    
T  15074816 aagttgttttcataagttatactggaaagcttatggaaataagctgaaaacagcttat 15074759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 17258946 - 17258893
Alignment:
Q  49 tgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttat 102  Q
    |||||||||||  |||||||||||| ||||| | |||| |||||||||||||||    
T  17258946 tgttttcataaactatcctgaagagcttatgaaaataagctgaaaacagcttat 17258893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 17369030 - 17368973
Alignment:
Q  69 aagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccat 126  Q
    ||||||||||  | |||||||||||||| ||||||||| |||||||  ||||||||||    
T  17369030 aagagtttataaaaataatctgaaaacaacttatagacatctcataggctgtttccat 17368973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 28413343 - 28413294
Alignment:
Q  53 ttcataagatatcctgaagagtttatggagataatctgaaaacagcttat 102  Q
    |||||||| |||| || |||||||||||| |||| |||||||||||||||    
T  28413343 ttcataagttatcttggagagtttatggaaataagctgaaaacagcttat 28413294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 36318768 - 36318833
Alignment:
Q  36 ataagttagaagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagctta 101  Q
    |||||||  |||||||||||||||| |||| || ||| |||||| | |||| ||||||||||||||    
T  36318768 ataagttttaagttgttttcataagctatcttggagaatttatgtaaataagctgaaaacagctta 36318833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 40205141 - 40205084
Alignment:
Q  45 aagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttat 102  Q
    |||||||||||||||| ||||||| |||| |||| || |||| |||||||||| ||||    
T  40205141 aagttgttttcataagctatcctggagagcttatagaaataagctgaaaacagattat 40205084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 26209489 - 26209425
Alignment:
Q  36 ataagttagaagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagctt 100  Q
    ||||| || ||| |||||||||||| |||| ||||| |||||||   ||||||||||||||||||    
T  26209489 ataagctataagctgttttcataagctatcatgaagtgtttatgcgaataatctgaaaacagctt 26209425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 129
Target Start/End: Original strand, 3924628 - 3924711
Alignment:
Q  46 agttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataag 129  Q
    ||||||||| ||||| |||||||||||||||||||| |||| | ||||||| |||||| || | ||||||| ||||| ||||||    
T  3924628 agttgtttttataagctatcctgaagagtttatggaaataagccgaaaacaacttataaacatttcataaattgttttcataag 3924711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 26184759 - 26184830
Alignment:
Q  53 ttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttcc 124  Q
    |||||||  ||||||| |||| ||||||| |||||||||||||||||||| ||| | |||||| ||||||||    
T  26184759 ttcataaattatcctggagagcttatggaaataatctgaaaacagcttatggacatgtcataagctgtttcc 26184830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 15361814 - 15361860
Alignment:
Q  133 tcacaaatgcttatgacagtaaataagctcaactaagtcaatccaaa 179  Q
    ||||||||||||||||||||||||||| |||| |||||| |||||||    
T  15361814 tcacaaatgcttatgacagtaaataagttcaaataagtcgatccaaa 15361860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 143 - 180
Target Start/End: Original strand, 15784909 - 15784946
Alignment:
Q  143 ttatgacagtaaataagctcaactaagtcaatccaaac 180  Q
    |||||||||||||||||||||| |||||||||||||||    
T  15784909 ttatgacagtaaataagctcaaataagtcaatccaaac 15784946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 45205062 - 45205127
Alignment:
Q  36 ataagttagaagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagctta 101  Q
    ||||| ||||||||||||||||||| |||| || |||||| ||||| |||| ||||||||| ||||    
T  45205062 ataagctagaagttgttttcataagctatcatgtagagttcatggaaataagctgaaaacaactta 45205127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 32958739 - 32958787
Alignment:
Q  132 ctcacaaatgcttatgacagtaaataagctcaactaagtcaatccaaac 180  Q
    ||||||| |||||||||||||| |||||||||| |||||||||| ||||    
T  32958739 ctcacaagtgcttatgacagtagataagctcaaataagtcaatctaaac 32958787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 128
Target Start/End: Original strand, 44940335 - 44940426
Alignment:
Q  36 ataagttagaagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataa 128  Q
    |||||||| |||||||||||||||  |||||||||||| || |||| |||| ||||||| | ||||| ||| | || ||||||||| ||||||    
T  44940335 ataagttataagttgttttcataatctatcctgaagaggttgtggaaataagctgaaaa-aacttatggacatgtcgtaaactgttaccataa 44940426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 45394124 - 45394195
Alignment:
Q  51 ttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgttt 122  Q
    |||||||||| ||||||| | ||||||| || ||||  |||||||||||||| ||| |||||||| ||||||    
T  45394124 ttttcataagttatcctgtaaagtttattgaaataagttgaaaacagcttatcgacatctcataagctgttt 45394195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 6292592 - 6292642
Alignment:
Q  130 atctcacaaatgcttatgacagtaaataagctcaactaagtcaatccaaac 180  Q
    |||||| || |||||||| ||||| |||||||||| |||||||||||||||    
T  6292592 atctcaaaagtgcttatgtcagtagataagctcaaataagtcaatccaaac 6292642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 43954101 - 43954055
Alignment:
Q  56 ataagatatcctgaagagtttatggagataatctgaaaacagcttat 102  Q
    ||||| |||||||||||| |||||||||||| ||||||||| |||||    
T  43954101 ataagttatcctgaagagcttatggagataagctgaaaacaacttat 43954055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 219618 - 219561
Alignment:
Q  45 aagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttat 102  Q
    ||||||||| |||||| | |||||||||| ||||||| || | |||||||||||||||    
T  219618 aagttgtttacataagctgtcctgaagagcttatggaaatgagctgaaaacagcttat 219561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 6933027 - 6932946
Alignment:
Q  46 agttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccata 127  Q
    |||| |||||||||| | |||||||||| ||||||| |||| ||||||  | |||||  || | ||||||||||||||||||    
T  6933027 agttcttttcataagttgtcctgaagagcttatggaaataaactgaaactaacttatgaacatatcataaactgtttccata 6932946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 7262585 - 7262528
Alignment:
Q  45 aagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttat 102  Q
    ||||| |||||||||| |||||||||||| || |||| ||||  ||||||||||||||    
T  7262585 aagttcttttcataagctatcctgaagagcttgtggaaataaggtgaaaacagcttat 7262528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 33976279 - 33976328
Alignment:
Q  131 tctcacaaatgcttatgacagtaaataagctcaactaagtcaatccaaac 180  Q
    |||||||| |||| ||| || ||||||||||||| |||||||||||||||    
T  33976279 tctcacaagtgctgatgtcattaaataagctcaaataagtcaatccaaac 33976328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 129
Target Start/End: Original strand, 35925696 - 35925777
Alignment:
Q  48 ttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataag 129  Q
    |||||| |||||| |||| || |||||||||||| ||||  ||||||||||||||  || | |||||| |||||| ||||||    
T  35925696 ttgtttccataagctatcatggagagtttatggaaataagttgaaaacagcttatgaacatgtcataagctgttttcataag 35925777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 41638277 - 41638228
Alignment:
Q  131 tctcacaaatgcttatgacagtaaataagctcaactaagtcaatccaaac 180  Q
    ||||||||||||||||| ||||| ||| |||||| |||| ||||||||||    
T  41638277 tctcacaaatgcttatgccagtagataggctcaattaagacaatccaaac 41638228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 12564564 - 12564496
Alignment:
Q  47 gttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataa 115  Q
    |||||||||||||| |||| || |||  ||||||| |||| ||||||||| ||||| ||||| ||||||    
T  12564564 gttgttttcataagctatcttggagaacttatggaaataagctgaaaacaacttattgacttgtcataa 12564496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 54325098 - 54325020
Alignment:
Q  51 ttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataag 129  Q
    |||||| ||| |||| || ||||||||||||||||| ||||||||||||||| ||| | ||||||||| ||||| ||||    
T  54325098 ttttcaaaagctatcatggagagtttatggagataaactgaaaacagcttatggacatatcataaactatttccgtaag 54325020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 6979029 - 6978959
Alignment:
Q  45 aagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataa 115  Q
    |||||||||| |||||  ||||| ||||||||||| | |||| ||||||||||||||||||| | ||||||    
T  6979029 aagttgtttttataagccatcctaaagagtttatgaaaataagctgaaaacagcttatagacatgtcataa 6978959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 7694086 - 7694020
Alignment:
Q  36 ataagttagaagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttat 102  Q
    ||||| || ||| |||||||||||| ||||||| |||||||||||| |||| ||||||||| |||||    
T  7694086 ataagctataagctgttttcataagttatcctggagagtttatggaaataagctgaaaacaacttat 7694020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 14011241 - 14011332
Alignment:
Q  49 tgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataagatctcacaaat 140  Q
    ||||| |||||| |||| || |||| ||||||| |||| |||||||||||||| |||| | | ||||||| ||| |||||| |||| |||||    
T  14011241 tgtttacataagctatcttggagagcttatggaaataagctgaaaacagcttaaagacatgtgataaactctttgcataagctctcccaaat 14011332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 21043298 - 21043219
Alignment:
Q  49 tgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataa 128  Q
    |||||||||||| ||||||||||||  |||| | |||  |||||||||||||||  || | |||||| ||||||||||||    
T  21043298 tgttttcataagctatcctgaagagcatatgaaaatacactgaaaacagcttatgaacgtgtcataagctgtttccataa 21043219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 96
Target Start/End: Original strand, 35064862 - 35064909
Alignment:
Q  49 tgttttcataagatatcctgaagagtttatggagataatctgaaaaca 96  Q
    ||||||||||||||||| || |||||||||||| |||| |||||||||    
T  35064862 tgttttcataagatatcatggagagtttatggaaataagctgaaaaca 35064909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 18019976 - 18020030
Alignment:
Q  46 agttgttttcataagatatcctgaagagtttatggagataatctgaaaacagctt 100  Q
    ||||||||||||||| ||| ||  |||||||||||| |||| |||||||||||||    
T  18019976 agttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 18020030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 29263373 - 29263451
Alignment:
Q  45 aagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttc 123  Q
    |||||||||||||||| ||||||| |||| || |||| |||| ||||||||| |||||  || | |||||| |||||||    
T  29263373 aagttgttttcataagctatcctgcagagcttgtggaaataagctgaaaacaacttatgaacatatcataagctgtttc 29263451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 55547107 - 55547041
Alignment:
Q  49 tgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataa 115  Q
    |||||||||||| ||| ||||| |||||||||| |||| || |||||| ||||||||| | ||||||    
T  55547107 tgttttcataagctatgctgaaaagtttatggaaataagctaaaaacaacttatagacatgtcataa 55547041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 134
Target Start/End: Original strand, 18011878 - 18011963
Alignment:
Q  49 tgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataagatctc 134  Q
    |||||||||||| |||| ||||||||||||| | |||| || ||||| ||||||| || | | |||| |||||| |||||| ||||    
T  18011878 tgttttcataagctatcttgaagagtttatgaaaataagctaaaaacggcttatatacatattataagctgttttcataagctctc 18011963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 19305026 - 19305075
Alignment:
Q  130 atctcacaaatgcttatgacagtaaataagctcaactaagtcaatccaaa 179  Q
    |||||||||||||||||| || || |||| ||||| ||||||||||||||    
T  19305026 atctcacaaatgcttatgtcaatagataatctcaaataagtcaatccaaa 19305075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 24371020 - 24370963
Alignment:
Q  45 aagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttat 102  Q
    |||||||||||||||| |||||| || ||||||| || |||| |||||||| ||||||    
T  24371020 aagttgttttcataagctatcctaaatagtttatagaaataagctgaaaacggcttat 24370963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 32920467 - 32920431
Alignment:
Q  45 aagttgttttcataagatatcctgaagagtttatgga 81  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  32920467 aagttgttttcataagttatcctgaaaagtttatgga 32920431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 127
Target Start/End: Complemental strand, 30923961 - 30923883
Alignment:
Q  49 tgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccata 127  Q
    |||||||||||  ||||||  ||||||||| || |||| ||||||||||||||||||| | |||||| |||||||||||    
T  30923961 tgttttcataacctatcctagagagtttatagaaataagctgaaaacagcttatagacatgtcataagctgtttccata 30923883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 9279391 - 9279310
Alignment:
Q  47 gttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataa 128  Q
    |||||||||||||  |||| ||||||||||| ||| |||| |||||||||||||||| || | | |||| ||||||||||||    
T  9279391 gttgttttcataaactatcatgaagagtttaaggaaataagctgaaaacagcttatatacatgttataagctgtttccataa 9279310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 13709886 - 13709817
Alignment:
Q  49 tgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaact 118  Q
    |||||||||||| ||||||| ||||||||| || |||| ||||||||| ||||| ||||| |||||||||    
T  13709886 tgttttcataagctatcctggagagtttattgaaataaactgaaaacaacttatggacttgtcataaact 13709817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 129
Target Start/End: Original strand, 34382936 - 34383029
Alignment:
Q  36 ataagttagaagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataag 129  Q
    |||||||| ||||| |||||||||| ||||||||| || ||| | | ||||  |||||||| ||||||||| | |||||| |||||||||||||    
T  34382936 ataagttataagttcttttcataagctatcctgaaaagcttaagaaaataagatgaaaacaacttatagacatatcataatctgtttccataag 34383029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 24887359 - 24887258
Alignment:
Q  36 ataagttagaagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataagatctca 135  Q
    ||||| || ||| |||||||||||| ||||||| |||| ||||||  |||| |||||||||| |||  ||| | ||||||| |||||||||| |||||||    
T  24887359 ataagctaaaagctgttttcataagctatcctggagagcttatgggaataagctgaaaacag-ttaatgacatgtcataaattgtttccatacgatctca 24887261  T
Q  136 caa 138  Q
    |||    
T  24887260 caa 24887258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 237392 - 237457
Alignment:
Q  37 taagttagaagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttat 102  Q
    ||||||| |||||||||||||||| ||||||  |||| ||| ||| |||| |||||||||||||||    
T  237392 taagttataagttgttttcataagttatcctatagagcttacggaaataagctgaaaacagcttat 237457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 140
Target Start/End: Complemental strand, 36646458 - 36646354
Alignment:
Q  36 ataagttagaagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataagatctca 135  Q
    |||||||| || ||||||||||||| ||||||  ||||||||| || ||||  |||||||||||||| ||| |  |||||   ||||||||||| ||||     
T  36646458 ataagttataacttgttttcataagctatcctagagagtttatagaaataagatgaaaacagcttatggacatgccataagtggtttccataagctctcc 36646359  T
Q  136 caaat 140  Q
    |||||    
T  36646358 caaat 36646354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 41452530 - 41452621
Alignment:
Q  49 tgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataagatctcacaaat 140  Q
    |||||||||||| ||||||| |||  || |||| ||||  |||||||||||||||||| | ||||||  |||||| ||||| |||| |||||    
T  41452530 tgttttcataagctatcctggagaagttgtggaaataaggtgaaaacagcttatagacatatcataagttgtttctataaggtctctcaaat 41452621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 14548797 - 14548735
Alignment:
Q  36 ataagttagaagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagc 98  Q
    ||||| || |||||||||||||||| ||| ||| |||| ||||||| |||| |||||||||||    
T  14548797 ataagctataagttgttttcataagttattctggagagcttatggaaataagctgaaaacagc 14548735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 30322087 - 30322029
Alignment:
Q  45 aagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttata 103  Q
    |||||||||||||||| |||||| ||||| ||||||| ||||  |||| ||||||||||    
T  30322087 aagttgttttcataagttatcctaaagagcttatggaaataaattgaacacagcttata 30322029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 27290964 - 27290884
Alignment:
Q  49 tgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataag 129  Q
    ||||| ||| || ||||||| |||||| ||||| |||| ||||||||||||||| | | | |||||| |||||| ||||||    
T  27290964 tgtttgcattagctatcctgcagagttcatggaaataagctgaaaacagcttatgggcatgtcataagctgttttcataag 27290884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 30750025 - 30750073
Alignment:
Q  67 tgaagagtttatggagataatctgaaaacagcttatagacttctcataa 115  Q
    |||||||||||||||  ||||||||||||||||||| ||| | ||||||    
T  30750025 tgaagagtttatggatctaatctgaaaacagcttatggacatgtcataa 30750073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 12746 - 12641
Alignment:
Q  70 agagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataagatctcacaaatgcttatgacagtaaataagctcaactaag 169  Q
    |||| |||||||| ||| ||||||||| ||||| ||| | ||||||  |||||||||||| |||||||| ||||||||  |||  ||||| |||| ||||    
T  12746 agagcttatggagctaagctgaaaacaacttatggacatgtcataagttgtttccataaggtctcacaagtgcttatgctagtggataagttcaaataag 12647  T
Q  170 tcaatc 175  Q
    ||||||    
T  12646 tcaatc 12641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 10560148 - 10560194
Alignment:
Q  131 tctcacaaatgcttatgacagtaaataagctcaactaagtcaatcca 177  Q
    ||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  10560148 tctcacaaatgtttatgtcagtagataagctcaactaagtcaatcca 10560194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 5088855 - 5088944
Alignment:
Q  45 aagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataagatctc 134  Q
    |||||||||||| |||  |||||| |||| |||| || ||||  |||||||||||||| ||| | | |||||||||||||||||| ||||    
T  5088855 aagttgttttcacaagcgatcctggagagcttattgaaataagttgaaaacagcttatggacatgttataaactgtttccataagctctc 5088944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 14926951 - 14926902
Alignment:
Q  131 tctcacaaatgcttatgacagtaaataagctcaactaagtcaatccaaac 180  Q
    |||||||| |||||||| ||||||||||| |||| |||||||||||||||    
T  14926951 tctcacaagtgcttatgccagtaaataagttcaaataagtcaatccaaac 14926902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 30259147 - 30259212
Alignment:
Q  75 ttatggagataatctgaaaacagcttatagacttctcataaactgtttccataagatctcacaaat 140  Q
    ||||||| |||| ||||||||| ||||||||| | |||||| ||||||||||||| |||| |||||    
T  30259147 ttatggaaataaactgaaaacaacttatagacatatcataagctgtttccataagctctctcaaat 30259212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 29973075 - 29973134
Alignment:
Q  36 ataagttagaagttgttttcataagatatcctgaagagtttatggagataatctgaaaac 95  Q
    ||||| || |||||||||||||||| ||||||  |||||||||||| |||| ||||||||    
T  29973075 ataagctataagttgttttcataagctatccttgagagtttatggaaataaactgaaaac 29973134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 11183552 - 11183618
Alignment:
Q  49 tgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataa 115  Q
    |||||||| ||| || |||| |||| ||||||| |||| ||||||||||||||||||| | ||||||    
T  11183552 tgttttcacaagctaccctggagagcttatggaaataagctgaaaacagcttatagacatatcataa 11183618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 31705079 - 31705145
Alignment:
Q  36 ataagttagaagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttat 102  Q
    ||||| || ||| |||||||||||| | ||||  |||||||||||| |||| |||||||||||||||    
T  31705079 ataagctataagctgttttcataagctgtccttgagagtttatggaaataagctgaaaacagcttat 31705145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 7714343 - 7714392
Alignment:
Q  131 tctcacaaatgcttatgacagtaaataagctcaactaagtcaatccaaac 180  Q
    |||||||| || |||||||| || |||||||||| |||||||||||||||    
T  7714343 tctcacaagtgtttatgacattatataagctcaaataagtcaatccaaac 7714392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 140
Target Start/End: Complemental strand, 10062182 - 10062113
Alignment:
Q  71 gagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataagatctcacaaat 140  Q
    ||||||||| | |||| ||||||||||||||||||  | ||||||| |||| ||||||| |||| |||||    
T  10062182 gagtttatgcaaataagctgaaaacagcttatagaaatgtcataaaatgttgccataagctctcccaaat 10062113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 30277308 - 30277255
Alignment:
Q  49 tgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttat 102  Q
    |||||||||||| ||||||  |||||||||||| |||| ||||||||| |||||    
T  30277308 tgttttcataagctatcctagagagtttatggaaataagctgaaaacaacttat 30277255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 42370424 - 42370367
Alignment:
Q  49 tgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagac 106  Q
    |||| ||||||| |||| ||||||||||||||| |||| |||||||||| || |||||    
T  42370424 tgttctcataagctatcatgaagagtttatggaaataagctgaaaacagtttgtagac 42370367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 43368669 - 43368620
Alignment:
Q  131 tctcacaaatgcttatgacagtaaataagctcaactaagtcaatccaaac 180  Q
    |||||||||||||||||  |||| ||||| |||| |||||||||||||||    
T  43368669 tctcacaaatgcttatgttagtagataagatcaaataagtcaatccaaac 43368620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 4560509 - 4560561
Alignment:
Q  49 tgttttcataagatatcctgaagagtttatggagataatctgaaaacagctta 101  Q
    ||||||| |||| |||||| ||||| |||| || |||||||||||||||||||    
T  4560509 tgttttcttaaggtatcctcaagagcttatcgaaataatctgaaaacagctta 4560561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 4560604 - 4560652
Alignment:
Q  132 ctcacaaatgcttatgacagtaaataagctcaactaagtcaatccaaac 180  Q
    ||||||| |||||||| || || |||||||||| |||||||||||||||    
T  4560604 ctcacaagtgcttatgtcaatagataagctcaaataagtcaatccaaac 4560652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 14949875 - 14949939
Alignment:
Q  51 ttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataa 115  Q
    |||||||||| |||||| ||||| |||| || |||| ||||||||||||||| ||| | ||||||    
T  14949875 ttttcataagctatcctaaagagattatagaaataagctgaaaacagcttatggacatgtcataa 14949939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 24363673 - 24363611
Alignment:
Q  40 gttagaagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttat 102  Q
    |||| |||||||||||||||| ||||||| |||| ||||||| |||| ||||||||| |||||    
T  24363673 gttataagttgttttcataagctatcctggagaggttatggaaataagctgaaaacaacttat 24363611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 40439052 - 40439118
Alignment:
Q  40 gttagaagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagac 106  Q
    |||| ||||||||||||| || |||||||||||| ||||||| ||||  | ||||||||||||||||    
T  40439052 gttataagttgttttcattagctatcctgaagagcttatggaaataagttaaaaacagcttatagac 40439118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 39505959 - 39506014
Alignment:
Q  45 aagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagctt 100  Q
    |||||||||||||||| ||| ||| |||||||||||| |||| ||||||| |||||    
T  39505959 aagttgttttcataagctattctggagagtttatggaaataagctgaaaatagctt 39506014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 4966163 - 4966229
Alignment:
Q  49 tgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataa 115  Q
    ||||||||||||  ||||||||||| ||||||| |||| ||||||||| ||||| ||| | ||||||    
T  4966163 tgttttcataagccatcctgaagagcttatggaaataaactgaaaacaacttatggacatatcataa 4966229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 31002850 - 31002808
Alignment:
Q  131 tctcacaaatgcttatgacagtaaataagctcaactaagtcaa 173  Q
    |||||||| |||||||||||||| |||||||||| ||||||||    
T  31002850 tctcacaattgcttatgacagtagataagctcaattaagtcaa 31002808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 20553106 - 20553195
Alignment:
Q  45 aagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataagatctc 134  Q
    |||||||||||| ||| ||||||   ||| ||||||| |||||||||||||| |||||  || | || ||| ||||||||||||| ||||    
T  20553106 aagttgttttcacaagttatcctagtgagcttatggaaataatctgaaaacaacttatgaacatgtcgtaagctgtttccataagctctc 20553195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 33646023 - 33645939
Alignment:
Q  49 tgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataagatctc 134  Q
    |||||||||||| |||| || |||| ||||||| |||| || |||||| ||||||||| | ||||||  |||||||||||| ||||    
T  33646023 tgttttcataagctatc-tggagagcttatggaaataacctaaaaacaacttatagacatgtcataagttgtttccataagctctc 33645939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 39345478 - 39345555
Alignment:
Q  49 tgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccat 126  Q
    |||||||| ||| |||||||| ||  ||||||| |||| |||||| || ||||| ||| | |||||||||||||||||    
T  39345478 tgttttcaaaagctatcctgacgaccttatggaaataagctgaaagcaacttatggacatgtcataaactgtttccat 39345555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 1418529 - 1418569
Alignment:
Q  140 tgcttatgacagtaaataagctcaactaagtcaatccaaac 180  Q
    |||||||| ||||| |||||||||| |||||||||||||||    
T  1418529 tgcttatgccagtagataagctcaaataagtcaatccaaac 1418569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 5628629 - 5628538
Alignment:
Q  49 tgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactg-tttccataagatctcacaaat 140  Q
    |||||||||||||||||    |||| ||||| | |||| |||||| |||||||||||| | |||||||||| ||||| ||||||||| |||||    
T  5628629 tgttttcataagatatcacagagagcttatgaaaataagctgaaa-cagcttatagacatgtcataaactgttttccgtaagatctctcaaat 5628538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 12234858 - 12234810
Alignment:
Q  131 tctcacaaatgcttatgacagtaaataagctcaactaagtcaatccaaa 179  Q
    |||||||  |||| ||| ||||| |||||||||||||||||||||||||    
T  12234858 tctcacacgtgctaatgccagtagataagctcaactaagtcaatccaaa 12234810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 44151556 - 44151476
Alignment:
Q  36 ataagttagaagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaa 116  Q
    ||||| || |||||||||||||||  |||| |||| || ||||||| |||| ||||||||| ||||| ||| | |||||||    
T  44151556 ataagctataagttgttttcataaactatcttgaaaagcttatggaaataagctgaaaacatcttatggacatgtcataaa 44151476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 32665665 - 32665751
Alignment:
Q  48 ttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataagatctc 134  Q
    ||||||| ||||| |||||| |||||||| |||| |||  ||||||||||  ||||| | | ||||||| |||||||||||||||||    
T  32665665 ttgtttttataagctatcctaaagagtttgtggaaatatgctgaaaacaggctataggcatgtcataaaatgtttccataagatctc 32665751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 34939755 - 34939836
Alignment:
Q  53 ttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataagatctc 134  Q
    |||||||| ||||||| |||||||||||| |||| |||||||||  |||| ||| | |||||| |||||||| |||| ||||    
T  34939755 ttcataagctatcctggagagtttatggaaataagctgaaaacaatttatggacatgtcataagctgtttccgtaagctctc 34939836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 2117406 - 2117490
Alignment:
Q  45 aagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataag 129  Q
    |||||||||||||||| ||||||  |||| |||| || |||| || |||||||||||||||| |  |||||| |||||| |||||    
T  2117406 aagttgttttcataagttatcctagagagcttattgaaataagctaaaaacagcttatagacatgccataaattgtttctataag 2117490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 3155185 - 3155248
Alignment:
Q  51 ttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataa 115  Q
    |||||||||||||||||| |||| | ||||| |||| ||||||||||||||||||| | ||||||    
T  3155185 ttttcataagatatcctggagagct-atggaaataagctgaaaacagcttatagacatgtcataa 3155248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 34939526 - 34939610
Alignment:
Q  55 cataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataagatctcacaaa 139  Q
    |||||| |||||||||||| ||||||| |||| ||||||||| ||||  ||| | ||||||  |||||||||||| |||| ||||    
T  34939526 cataagctatcctgaagaggttatggaaataagctgaaaacaacttacggacgtgtcataagttgtttccataagctctctcaaa 34939610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 30782137 - 30782204
Alignment:
Q  48 ttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataa 115  Q
    ||||||| ||||| |||| || |||||||||||| |||||||||||||  ||||||||| | ||||||    
T  30782137 ttgtttttataagttatcatggagagtttatggatataatctgaaaactacttatagacgtgtcataa 30782204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 5564194 - 5564140
Alignment:
Q  46 agttgttttcataagatatcctgaagagtttatggagataatctgaaaacagctt 100  Q
    ||||||||||||||| | || ||||||||||||| | |||| |||||||||||||    
T  5564194 agttgttttcataagctgtcttgaagagtttatgcaaataagctgaaaacagctt 5564140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 29249505 - 29249543
Alignment:
Q  142 cttatgacagtaaataagctcaactaagtcaatccaaac 180  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  29249505 cttataacagtaaataagctcaaataagtcaatccaaac 29249543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 31686426 - 31686360
Alignment:
Q  49 tgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataa 115  Q
    |||||||||||| ||||||| |||| ||| ||| |||| |||||||||| ||||| |||| ||||||    
T  31686426 tgttttcataagctatcctggagagcttacggacataagctgaaaacagattataaacttgtcataa 31686360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 33080548 - 33080498
Alignment:
Q  130 atctcacaaatgcttatgacagtaaataagctcaactaagtcaatccaaac 180  Q
    ||||||||| |||||||| |||||||||||||||| |||| | ||||||||    
T  33080548 atctcacaagtgcttatgccagtaaataagctcaaataagcctatccaaac 33080498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 7714042 - 7714090
Alignment:
Q  132 ctcacaaatgcttatgacagtaaataagctcaactaagtcaatccaaac 180  Q
    |||||||||||||||||||||| |||| ||||| |  ||||||||||||    
T  7714042 ctcacaaatgcttatgacagtagataaactcaaattcgtcaatccaaac 7714090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 306329 - 306413
Alignment:
Q  45 aagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagcttatagacttctcataaactgtttccataag 129  Q
    |||||||||||||||| ||||||  |||| ||||| |  ||| ||||||||||||||| | | | |||||| |||||||||||||    
T  306329 aagttgttttcataagctatcctagagagcttatgtaagtaagctgaaaacagcttatgggcatgtcataagctgtttccataag 306413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 51633 - 51690
Alignment:
Q  110 tcataaactgtttccataagatctcacaaatgcttatgacagtaaataagctcaactaag 169  Q
    |||| ||||||||||||||| ||||||||||  ||||| ||||||||||| | |||||||    
T  51633 tcattaactgtttccataagctctcacaaat--ttatgtcagtaaataagttgaactaag 51690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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