View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5940-Insertion-5 (Length: 471)

Name: NF5940-Insertion-5
Description: NF5940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5940-Insertion-5
NF5940-Insertion-5
[»] chr6 (4 HSPs)
chr6 (132-284)||(33032803-33032955)
chr6 (322-463)||(33033030-33033171)
chr6 (168-264)||(33051082-33051177)
chr6 (62-97)||(33032608-33032643)
[»] chr4 (2 HSPs)
chr4 (173-264)||(8264038-8264128)
chr4 (173-264)||(8277456-8277546)
[»] chr1 (1 HSPs)
chr1 (175-264)||(9901030-9901117)
[»] chr7 (1 HSPs)
chr7 (179-264)||(7975171-7975254)
[»] chr5 (1 HSPs)
chr5 (179-264)||(13838156-13838239)
[»] chr2 (2 HSPs)
chr2 (179-264)||(26543713-26543796)
chr2 (179-215)||(43313162-43313198)
[»] chr3 (1 HSPs)
chr3 (179-255)||(1293818-1293892)


Alignment Details
Target: chr6 (Bit Score: 106; Significance: 7e-53; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 132 - 284
Target Start/End: Original strand, 33032803 - 33032955
Alignment:
Q  132 aaatttgatctgatcaattacgtattagtctga-ttttgtattttattggctatgatgagtcatagagatagtcatgcaccacttctgatgtttccgtgc 230  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33032803 aaatttgatctgatcaattacatattactctgaattttgtattttattggctatgatgagtcatagagatagtcatgcaccac-tctgatgtttccgtgc 33032901  T
Q  231 tgataatcttctcatacccattattcttcggagctatttctttttcattttcat 284  Q
    ||||||| ||||||||||||||||| ||| |||| ||||| |||||||| ||||    
T  33032902 tgataattttctcatacccattatttttctgagccatttcattttcattatcat 33032955  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 322 - 463
Target Start/End: Original strand, 33033030 - 33033171
Alignment:
Q  322 actcatctatttgctccatgatctactagccataattt-aaaacaaacaccattgtttgacacaatgaaagtctcatatatatctagtcttaatcgttct 420  Q
    ||||||| ||||||||||||||||||||||  |||||| ||||||||||||||| ||||||||  |||||| || ||| |||||||||||| |  | |||    
T  33033030 actcatccatttgctccatgatctactagcagtaattttaaaacaaacaccattatttgacac--tgaaagactaatagatatctagtctttagtgatct 33033127  T
Q  421 tagcttgttcagattcaatgtttattttcagg-caaatacctcc 463  Q
    ||||||||||| |||||||||||||||| ||| |||||||||||    
T  33033128 tagcttgttcaaattcaatgtttatttttaggccaaatacctcc 33033171  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 33051082 - 33051177
Alignment:
Q  168 tgtattttattggctatgatgagtcatagagatagtcatgcaccacttctgatgtttccgtgctgataatcttctcatacccattattcttcggagc 264  Q
    |||||||||| |||| |||||||||||||||||||||||||||||| ||| |||||||  |||||||||| |||||||||||| |||| ||| ||||    
T  33051082 tgtattttatgggctgtgatgagtcatagagatagtcatgcaccac-tctcatgtttcaatgctgataattttctcatacccaatatttttctgagc 33051177  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 97
Target Start/End: Original strand, 33032608 - 33032643
Alignment:
Q  62 tgatttataattttgtctgttacacaactttattta 97  Q
    |||| |||||||||||||||||||||||||||||||    
T  33032608 tgatgtataattttgtctgttacacaactttattta 33032643  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 8264038 - 8264128
Alignment:
Q  173 tttattggctatgatgagtcatagagatagtcatgcaccacttctgatgtttccgtgctgataatcttctcatacccattattcttcggagc 264  Q
    ||||| ||||||||||| ||||||||||||||||||||||| |||||| || | ||||||||||| ||||||||||||||||| ||| ||||    
T  8264038 tttatgggctatgatgaatcatagagatagtcatgcaccac-tctgatattccagtgctgataattttctcatacccattatttttctgagc 8264128  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 8277456 - 8277546
Alignment:
Q  173 tttattggctatgatgagtcatagagatagtcatgcaccacttctgatgtttccgtgctgataatcttctcatacccattattcttcggagc 264  Q
    ||||| ||||||||||| ||||||||||||||||||||||| |||||| || | ||||||||||| ||||||||||||||||| ||| ||||    
T  8277456 tttatgggctatgatgaatcatagagatagtcatgcaccac-tctgatattccagtgctgataattttctcatacccattatttttctgagc 8277546  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 264
Target Start/End: Complemental strand, 9901117 - 9901030
Alignment:
Q  175 tattggctatgatgagtcatagagatagtcatgcaccacttctgatgtttccgtgctgataatcttctcatacccattattcttcggagc 264  Q
    ||||||||||||||| |  |||||||||||||||||||| |||||| || | ||||||||||| ||||||||||||||||| ||| ||||    
T  9901117 tattggctatgatgaattttagagatagtcatgcaccac-tctgat-ttcctgtgctgataattttctcatacccattatttttctgagc 9901030  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 7975171 - 7975254
Alignment:
Q  179 ggctatgatgagtcatagagatagtcatgcaccacttctgatgtttccgtgctgataatcttctcatacccattattcttcggagc 264  Q
    ||||||||||| ||||||||||||||||||||||||| |||| || | ||||||||||  |||| |||||||||||| ||| ||||    
T  7975171 ggctatgatgaatcatagagatagtcatgcaccactt-tgat-ttcctgtgctgataactttcttatacccattatttttcagagc 7975254  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 264
Target Start/End: Complemental strand, 13838239 - 13838156
Alignment:
Q  179 ggctatgatgagtcatagagatagtcatgcaccacttctgatgtttccgtgctgataatcttctcatacccattattcttcggagc 264  Q
    ||||||||||| ||||||||||||||||||||||||| |||| || | ||||||||||  |||| |||||||||||| ||| ||||    
T  13838239 ggctatgatgaatcatagagatagtcatgcaccactt-tgat-ttcctgtgctgataactttcttatacccattatttttcagagc 13838156  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 264
Target Start/End: Complemental strand, 26543796 - 26543713
Alignment:
Q  179 ggctatgatgagtcatagagatagtcatgcaccacttctgatgtttccgtgctgataatcttctcatacccattattcttcggagc 264  Q
    ||||||||||| ||||||||||||||||||||||||| |||| || | ||||||||||  |||| |||||||||||| ||| ||||    
T  26543796 ggctatgatgaatcatagagatagtcatgcaccactt-tgat-ttcctgtgctgataactttcttatacccattatttttcagagc 26543713  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 43313198 - 43313162
Alignment:
Q  179 ggctatgatgagtcatagagatagtcatgcaccactt 215  Q
    ||||||||||| |||||||||||||||||||||||||    
T  43313198 ggctatgatgaatcatagagatagtcatgcaccactt 43313162  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 1293892 - 1293818
Alignment:
Q  179 ggctatgatgagtcatagagatagtcatgcaccacttctgatgtttccgtgctgataatcttctcatacccattatt 255  Q
    ||||||||||| ||||||||||||||||||||||||| |||| || | ||||||||||  |||| ||||||||||||    
T  1293892 ggctatgatgaatcatagagatagtcatgcaccactt-tgat-ttcctgtgctgataactttcttatacccattatt 1293818  T

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