View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5940-Insertion-6 (Length: 377)
Name: NF5940-Insertion-6
Description: NF5940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5940-Insertion-6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 8 - 377
Target Start/End: Complemental strand, 10342108 - 10341739
Alignment:
| Q |
8 |
atttgaaacagtgaattgtgtccatcgtaaataatggaatgttacaaaagcatatgccctatattgtaattaataaatttactaattatcattgttcagt |
107 |
Q |
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| T |
10342108 |
atttgaaacagtgaattgtgtccatcgtaaataatggaatgttacaaaagcatatgccctatattgtaattaataaatttactaattatcattgttcagt |
10342009 |
T |
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| Q |
108 |
gatatgctgcaaagtaagaaaagcacatagtcaaataacaagattgaatcttagaaatacttcgacacaagatacagtggtggagatgggaaaattaaat |
207 |
Q |
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| T |
10342008 |
gatatgctgcaaagtaagaaaagcacatagtcaaataacaagattgaatcttagaaatacttcgacacaagatacagtggtggagatgggaaaattaaat |
10341909 |
T |
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| Q |
208 |
ttggtttaatattcaaatttctaactaaacaatggaaatgagtttgatgtagcttagaaatattgcttcgagatgtaggcattgtgataatcttactttt |
307 |
Q |
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| T |
10341908 |
ttggtttaatattcaaatttctaactaaacaatggaaatgagtttgatgtagcttagaaatattgcttcgagatgtaggcattgtgataatcttactttt |
10341809 |
T |
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| Q |
308 |
attatcatataagaatttagaagttttggcgagttcggtttcagaagctcaacagtgtcagggtagacat |
377 |
Q |
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| T |
10341808 |
attatcatataagaatttagaagttttggcgagttcggtttcagaagctcaacagtgtcagggtagacat |
10341739 |
T |
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