View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5940_low_1 (Length: 783)
Name: NF5940_low_1
Description: NF5940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5940_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 41965909 - 41965545
Alignment:
| Q |
18 |
aactcaaacgaagttcctaaggttgcagattttcttggtgtgagcagcaagagtactgaaaatgagtcagatcttgcagcctataatgaaatgaataact |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41965909 |
aactcaaacgaagttccaaaggttgcagattttcttggtgtgagcagcaagagtactgaaaatgagtcagatcttgcagcctataatgaaatgaatagct |
41965810 |
T |
|
| Q |
118 |
caaatcatcattctttagatgattacttgttgatgccgccagtacaaaatagctcagcaacttctagcaacaactatgaccaatatgaagaaaaccctaa |
217 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41965809 |
caaatcatcattctttagataattacttgttcatgccgccagtacaaaatagctcagcaacttctagcaacaactatgaccaatatgaagaaaaccctaa |
41965710 |
T |
|
| Q |
218 |
caataatctgcagtcattgacattatcaatgggaagtggtactactaaggattccacatgtgataataatatcgttgaagcagctgcaacacctagaaga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41965709 |
caataatctgcagtcattgacattatcaatgggaagtggtactactaaggattccacatgtgataataatatcgttgaagcagctgcaacacctagaaga |
41965610 |
T |
|
| Q |
318 |
gctttggatacctttggccaaagaacatcaatatatcgtggtgtaacaaggtttgaaaatatatt |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41965609 |
gctttggatacctttggccaaagaacatcaatatatcgtggtgtaacaaggtttgaaaatatatt |
41965545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 410 - 666
Target Start/End: Complemental strand, 41965454 - 41965198
Alignment:
| Q |
410 |
tctggcttaagtagaattcgtcgaaaaaatcatgttagtaatggcaaccgtgtttcaccataaatcgcattagacatacatcaatgttgtgatttatttt |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41965454 |
tctggcttaagtagaattcgtcgaaaaaatcatgttagtaatggcaaccgtgtttcaccataaatcgcattagacatacatcaatgttgtgatttatttt |
41965355 |
T |
|
| Q |
510 |
aatttgcttttatccttcaaaatcaaattctctatatagacatagatggaccggaaggtatgaagctcacctttgggataatacttgtagaagggaaggt |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41965354 |
aatttgcttttatccttcaaaatcaaattctctatatagacatagatggaccggaaggtatgaagctcacctttgggataatacttgtagaagggaaggt |
41965255 |
T |
|
| Q |
610 |
caatcaagaaaaggacgtcaaggtaacaacaaattaacttcaaaccacttaatgttt |
666 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41965254 |
cagtcaagaaaaggacgtcaaggtaacaacaaattaacttcaaaccacttaatgttt |
41965198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 733 - 771
Target Start/End: Complemental strand, 41965113 - 41965075
Alignment:
| Q |
733 |
actaacacatttccatttttcttcatcttgccctatgct |
771 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41965113 |
actaacacatttccatttttcttcatcttgccctatgct |
41965075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 414
Target Start/End: Complemental strand, 41965551 - 41965522
Alignment:
| Q |
385 |
atatattgtttaaattttttgcatgtctgg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
41965551 |
atatattgtttaaattttttgcatgtctgg |
41965522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 544 - 635
Target Start/End: Complemental strand, 24563213 - 24563122
Alignment:
| Q |
544 |
tatagacatagatggaccggaaggtatgaagctcacctttgggataatacttgtagaagggaaggtcaatcaagaaaaggacgtcaaggtaa |
635 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||| || |||||||| || |||||||| |
|
|
| T |
24563213 |
tatagacatagatggactggaaggtatgaagctcacctttgggataacagctgtagaagggaaggtcagtcgagaaaaggccgccaaggtaa |
24563122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 550 - 602
Target Start/End: Complemental strand, 30620032 - 30619980
Alignment:
| Q |
550 |
catagatggaccggaaggtatgaagctcacctttgggataatacttgtagaag |
602 |
Q |
| |
|
||||||||||| || || ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30620032 |
catagatggacagggagatatgaagctcacctttgggataatagttgtagaag |
30619980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 546 - 595
Target Start/End: Complemental strand, 16869959 - 16869910
Alignment:
| Q |
546 |
tagacatagatggaccggaaggtatgaagctcacctttgggataatactt |
595 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| || |||||||| |||| |
|
|
| T |
16869959 |
tagacatagatggaccggaaggtttgaagctcatctatgggataagactt |
16869910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University