View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5941-Insertion-2 (Length: 855)
Name: NF5941-Insertion-2
Description: NF5941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5941-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 9 - 350
Target Start/End: Complemental strand, 40605882 - 40605541
Alignment:
| Q |
9 |
attctttcattaaaataaaaaatgtgtcactctattcaaatatttgcacaattggcattttttacattctcagaaaccaactctagatgctaaaaataaa |
108 |
Q |
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| T |
40605882 |
attctttcattaaaataaaaaatgtgtcactctattcaaatatttgcacaattggcattttttacattctcagaaaccaactctagatgctaaaaataaa |
40605783 |
T |
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| Q |
109 |
tatagccatagatatgcatatacttgtaagttcaaaattgtcttcatgagtgcttgttttataaaaatgaattgtttatttcttttttggaggaataaaa |
208 |
Q |
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| T |
40605782 |
tatagccatagatatgcatatacttgtaagtttaaaattgtcttcgtgagtgcttgttttataaaaatgaattgtttatttcttttttggaggaataaaa |
40605683 |
T |
|
| Q |
209 |
aggattgtgttattaaaaattgagatttgaacatgaaaaacataacatgcaaaaatctttggtttgatctgggtttagaaattttctaaaacaaaatcta |
308 |
Q |
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| T |
40605682 |
aggattgtgttattaaaaattgagatttcaacataaaaaacataacatgcaaaaatctttggtttgatctgggtttagaaattttctaaaacaaaatcta |
40605583 |
T |
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| Q |
309 |
atatcaattttgagtttcagtttagttctgagcggagtttca |
350 |
Q |
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| T |
40605582 |
atatcatttttgagtttcagtttagttctgagcggagtttca |
40605541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 472 - 632
Target Start/End: Complemental strand, 40605421 - 40605261
Alignment:
| Q |
472 |
acacatacttgcaagcattgtccgagcaaccattacacaattatagagaaaactatattaacaacacccatggtttttctaagcggtggtgaatcacata |
571 |
Q |
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| T |
40605421 |
acacatacttgcaagcattgtccgagcaaccattacacaattatagagaaaactatattaacagcacccatggtttttctaagcggtggtgaatcacata |
40605322 |
T |
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| Q |
572 |
cttctgttaaacaataggtaaatttttagatatgtatgagtttggatgggtatcggtatcc |
632 |
Q |
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| T |
40605321 |
cttctgttaaacaataggtaaatttttagatatgtaagagtttagatgggtatcggtatcc |
40605261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 696 - 852
Target Start/End: Complemental strand, 40605197 - 40605041
Alignment:
| Q |
696 |
cgacattgattgaatattgattgaatgggtgaggagtacataccctagcttattttgatatgttgatatatatgtaattgaatctgacaaggtatgaaca |
795 |
Q |
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| T |
40605197 |
cgacattgattgaatattgattgaatggatgaggagtacataccctagcttattttgatatgttgatatatatgcaattgaatttgactaggtatgaaca |
40605098 |
T |
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| Q |
796 |
tgtttaattgtgaggggtaacctttgcgcaatgggtaaagttgttatcatgtgattg |
852 |
Q |
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| T |
40605097 |
tgtttaattgtgaggggtaactttggcgcaactggtaaagttgttgtcatgtgattg |
40605041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 806 - 849
Target Start/End: Original strand, 2626472 - 2626515
Alignment:
| Q |
806 |
tgaggggtaacctttgcgcaatgggtaaagttgttatcatgtga |
849 |
Q |
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| T |
2626472 |
tgaggggtaaccttggcgcaattggtaaagttgttgtcatgtga |
2626515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 806 - 854
Target Start/End: Complemental strand, 34626389 - 34626341
Alignment:
| Q |
806 |
tgaggggtaacctttgcgcaatgggtaaagttgttatcatgtgattgaa |
854 |
Q |
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| T |
34626389 |
tgaggggtaaccttagcgcaactggtaaagttgttgtcatgtgattgaa |
34626341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 807 - 852
Target Start/End: Original strand, 46354148 - 46354193
Alignment:
| Q |
807 |
gaggggtaacctttgcgcaatgggtaaagttgttatcatgtgattg |
852 |
Q |
| |
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| T |
46354148 |
gaggggtaaccttggcgcaactggtaaagttgttgtcatgtgattg |
46354193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 806 - 854
Target Start/End: Original strand, 34714599 - 34714647
Alignment:
| Q |
806 |
tgaggggtaacctttgcgcaatgggtaaagttgttatcatgtgattgaa |
854 |
Q |
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| T |
34714599 |
tgaggggtaaccttggcgcaactggtaaagttgttgtcatgtgattgaa |
34714647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 799 - 854
Target Start/End: Complemental strand, 8247878 - 8247823
Alignment:
| Q |
799 |
ttaattgtgaggggtaacctttgcgcaatgggtaaagttgttatcatgtgattgaa |
854 |
Q |
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|||||| |||||||||||||| |||||| |||||||||||| |||||||| |||| |
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| T |
8247878 |
ttaattatgaggggtaaccttggcgcaactggtaaagttgttgtcatgtgactgaa |
8247823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 808 - 854
Target Start/End: Original strand, 14544018 - 14544064
Alignment:
| Q |
808 |
aggggtaacctttgcgcaatgggtaaagttgttatcatgtgattgaa |
854 |
Q |
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| T |
14544018 |
aggggtaaccttggcgcaattggtaaagttgttgtcatgtgactgaa |
14544064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 805 - 854
Target Start/End: Original strand, 38879533 - 38879582
Alignment:
| Q |
805 |
gtgaggggtaacctttgcgcaatgggtaaagttgttatcatgtgattgaa |
854 |
Q |
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| T |
38879533 |
gtgaggggtaaccttggcgcaactggtaaagttgttgtcatgtgactgaa |
38879582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 804 - 849
Target Start/End: Original strand, 5648210 - 5648255
Alignment:
| Q |
804 |
tgtgaggggtaacctttgcgcaatgggtaaagttgttatcatgtga |
849 |
Q |
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| T |
5648210 |
tgtgaggggtaaccttggcgcaactggtaaagttgttgtcatgtga |
5648255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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