View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5941-Insertion-4 (Length: 437)
Name: NF5941-Insertion-4
Description: NF5941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5941-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 254
Target Start/End: Complemental strand, 50456133 - 50455888
Alignment:
| Q |
9 |
acaaagtataggtcatctctctcagtggcaatgccatatccttttgtcttatggtaatctccaagatattgggatactcataatttggtgagcttaacag |
108 |
Q |
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| T |
50456133 |
acaaagtataggtcatctctctcagtggcaatgccatatccttttgtcttatggtaatctccaagatattgggatactcatagtttggtgagcttagcag |
50456034 |
T |
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| Q |
109 |
agatttaagttgtttagaactttattcctatcctaatttttggtattactgtcaattgtaactagttaagataagcatcaagagccggttgactccaaac |
208 |
Q |
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| T |
50456033 |
agatttaagttgtttagaactttattcctatcctaatttttggtattactgtcaattgtaactagttaagataagcatcaagagccggttgactccaaac |
50455934 |
T |
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| Q |
209 |
tttaaaatgtgatggctccagtagccagctccataatatattttta |
254 |
Q |
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| T |
50455933 |
attaaaatgtgatggctccagtagccagctccataatatattttta |
50455888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 343 - 401
Target Start/End: Complemental strand, 50455888 - 50455830
Alignment:
| Q |
343 |
actgctggttcgagttgtccatttaggagtagttcaaccatgatataaaaaggtaatga |
401 |
Q |
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| T |
50455888 |
actgctggttcgagttgtccatttaggagtagttcaaccatgatataaaaaggtaatga |
50455830 |
T |
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