View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5941-Insertion-5 (Length: 350)
Name: NF5941-Insertion-5
Description: NF5941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5941-Insertion-5 |
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| [»] scaffold0280 (1 HSPs) |
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| [»] scaffold0148 (1 HSPs) |
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Alignment Details
Target: scaffold0280 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 326
Target Start/End: Original strand, 1950 - 2268
Alignment:
| Q |
9 |
gatcccaactaacatccacttgtttagagcatggattgtcattggcaaagtaaaacggtgagaaaaccttcaaatttcctttgtatt-agatccttcagc |
107 |
Q |
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| T |
1950 |
gatcccaactaacttccacttgttcagagcatggattgtcattggcaaagtaaaacggtgagaaaaccttcaaattgcctttctatttagatccttcagc |
2049 |
T |
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| Q |
108 |
acaatattgtttgaaagaattatgctcgttataaatggtaaatgatcttgaacttgggtctacactaataactttgtaactaacgttgttgttggcggtg |
207 |
Q |
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| T |
2050 |
acaatattgtttgaaagaattatgctcattataaatggtaaatgttcttgaacttgggtctacactaataactttgtaactaacgttgttgttggcggtg |
2149 |
T |
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| Q |
208 |
aagctaagtttacccgttgaggtgttgcatctaaagttgaagtatgtgaagtctccacagttgggtccggtactgagaggacaagggactgtgtttgtac |
307 |
Q |
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| T |
2150 |
aagctaagtttacccgttgagatgttgcatctaaagttgaagtatgtgaagtctgcacagatgggtctggtattgagaggataagggactgtgtttgtac |
2249 |
T |
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| Q |
308 |
cacaaggctcacaggttct |
326 |
Q |
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| T |
2250 |
cacaaggctcacaagttct |
2268 |
T |
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Target: scaffold0148 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 169 - 326
Target Start/End: Original strand, 27262 - 27425
Alignment:
| Q |
169 |
acactaataactttgtaactaacgttgttgttggcggtgaagctaagtttaccc------gttgaggtgttgcatctaaagttgaagtatgtgaagtctc |
262 |
Q |
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|||| ||||||| |||||||||||||||| ||| ||||||||||| | ||| |||| ||| |||||||||||||||||||||| || ||||| |
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| T |
27262 |
acacgaataactctgtaactaacgttgttagcggccgtgaagctaaggtgaccttggcctgttgtggtattgcatctaaagttgaagtatgcgaggtctc |
27361 |
T |
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| Q |
263 |
cacagttgggtccggtactgagaggacaagggactgtgtttgtaccacaaggctcacaggttct |
326 |
Q |
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| T |
27362 |
cacagttgggtccggtactgagaggataagggactgtgtttgtaccacagggctcacaagttct |
27425 |
T |
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