View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5941_high_1 (Length: 733)
Name: NF5941_high_1
Description: NF5941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5941_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 50456133 - 50455888
Alignment:
| Q |
19 |
acaaagtataggtcatctctctcagtggcaatgccatatccttttgtcttatggtaatctccaagatattgggatactcataatttggtgagcttaacag |
118 |
Q |
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| T |
50456133 |
acaaagtataggtcatctctctcagtggcaatgccatatccttttgtcttatggtaatctccaagatattgggatactcatagtttggtgagcttagcag |
50456034 |
T |
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| Q |
119 |
agatttaagttgtttagaactttattcctatcctaatttttggtattactgtcaattgtaactagttaagataagcatcaagagccggttgactccaaac |
218 |
Q |
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| T |
50456033 |
agatttaagttgtttagaactttattcctatcctaatttttggtattactgtcaattgtaactagttaagataagcatcaagagccggttgactccaaac |
50455934 |
T |
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| Q |
219 |
tttaaaatgtgatggctccagtagccagctccataatatattttta |
264 |
Q |
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| T |
50455933 |
attaaaatgtgatggctccagtagccagctccataatatattttta |
50455888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 353 - 491
Target Start/End: Complemental strand, 50455888 - 50455738
Alignment:
| Q |
353 |
actgctggttcgagttgtccatttaggagtagttcaaccatgatataaaaaggtaatga-----------tgatat--acatgactcaaaaggaaatgga |
439 |
Q |
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| T |
50455888 |
actgctggttcgagttgtccatttaggagtagttcaaccatgatataaaaaggtaatgacttcacttccgtcatatgatcaacact-atatggaaatgga |
50455790 |
T |
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| Q |
440 |
atatgcatcctttgattttccaatgtataacgtcaacggatatatctatttt |
491 |
Q |
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| T |
50455789 |
atacgcatcctttgatttttcaatgtataacgtcaacggatatatctatttt |
50455738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 656 - 721
Target Start/End: Complemental strand, 50455560 - 50455495
Alignment:
| Q |
656 |
aattagaatgatgatatacaccgaattttctccctccctccaaataaaccaagcctataatagaat |
721 |
Q |
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| T |
50455560 |
aattagaatgaagatacacaccgaattttctccctccctccaaataaaccaagcctataatagaat |
50455495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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