View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5941_high_2 (Length: 588)
Name: NF5941_high_2
Description: NF5941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5941_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 501; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 10 - 569
Target Start/End: Original strand, 23427657 - 23428217
Alignment:
| Q |
10 |
attatactcctctgaatgtctcagatttgattatctccatccataaattttggcactggtttggtcattaaactacaggtagaaatactaataatgtagc |
109 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23427657 |
attatactcctctcaatgtctcagatttgattatctccatccataaattttgacattagtttggtcattaaactacaggtagaaatactaatagtgtagc |
23427756 |
T |
|
| Q |
110 |
agtgtataacttacaatgcaagtaatgtgtgtttttacaatgcaagtaatctaacttgaattaaaaactagcatcctcccttaattcaagttctctagct |
209 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23427757 |
agtgtataacttacaatgcaagtaatatgtgtttttacaatgcaagtaatctaacttgaattaaaaactagcatcctcccttaattcaagttctctagct |
23427856 |
T |
|
| Q |
210 |
tcaccattccaatcatgcatcttaacttgacaaatctgtcaatctctacatcttttgtaagcacatcagatagttgttcctcaatgggacaatgtatgac |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23427857 |
tcaccattccaatcatgcatcttaacttgacaaatctgtcaatcttttcatcttttgtaagcacatcagatagttgttcctcaatgggacaatgtatgac |
23427956 |
T |
|
| Q |
310 |
cttaagcatttatttattcacttgttctctgataaagtgaaatattgcctctatgtgtttacttctgacatgcaacacttggtttttagttaaatctata |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23427957 |
cttaagcatttatttattcacttgttctctgataaagtgaaatattgcctctatgtgtttacttctgacatgcaacacttggtttttagctaaatctata |
23428056 |
T |
|
| Q |
410 |
gcatattgttatcaacgagcaacgcagtaagcttgcaaacttctatcttcagttctcttaacacataat-cagccatattgtttgacatgcagctaagca |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
23428057 |
gcatattgttatcaacgagcaacgcagtaagcttgcaaacttctatcttcagttctcttaacacataatccaaccatattgtttgacatgcagctaagca |
23428156 |
T |
|
| Q |
509 |
acctgctttatactcatactcaccgattgaaatagtaaccaccggatgtttcttagcaccc |
569 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23428157 |
acctactttatactcatattcaccggttgaaatagtaaccaccggatgtttcttagcaccc |
23428217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 160 - 520
Target Start/End: Original strand, 17507186 - 17507549
Alignment:
| Q |
160 |
ctaacttgaattaaaaactagcatcctcccttaattcaagttctctagcttcaccattccaatcatgcatcttaacttgacaaatctgtcaatctctaca |
259 |
Q |
| |
|
||||||||||||| |||||| ||| ||| ||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||| ||||||||| ||| |
|
|
| T |
17507186 |
ctaacttgaattataaactaacattctctcttaattcaagttttttagcttcaccattccaatcatgcttcttattttgacaaatatgtcaatcttcaca |
17507285 |
T |
|
| Q |
260 |
tcttttgtaagcacatcagatagttgttcctcaatgggacaatgtatgaccttaagcatttatttattcacttgttctctgataaagtgaaatattgcct |
359 |
Q |
| |
|
||| ||| | || ||| |||||||||||| || | ||||||||||||||||| ||||| ||| |||||||||||||| |||||||||||| |||||| |
|
|
| T |
17507286 |
gcttctgttaacaaatccattagttgttcctctattgaacaatgtatgaccttaaacatttctttgttcacttgttctctaataaagtgaaattttgcct |
17507385 |
T |
|
| Q |
360 |
ctatgtgtttacttctgacatg-caacacttggtttttagttaaatctatagcata-ttgttatcaacgagcaacgcagtaagcttgcaaacttctatct |
457 |
Q |
| |
|
|||||||| ||||| |||| |||||||| || || | ||||||||||||| | || || | || ||| || ||| || |||||||||||||||||| |
|
|
| T |
17507386 |
taatgtgtttgcttctttcatgaaaacacttgattctttgctaaatctatagcaaatttattgttaatgaggaatgcaataggcttgcaaacttctatct |
17507485 |
T |
|
| Q |
458 |
tcagttctcttaacacataat-cagccatattgtttgacatgcagctaagcaacctgctttata |
520 |
Q |
| |
|
||||||| | ||||| ||| |||| |||||| ||||||||| ||||| ||||||||| |||| |
|
|
| T |
17507486 |
tcagttccttcaacacggaatccagcaatattgcttgacatgctgctaaacaacctgctatata |
17507549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 1834117 - 1834055
Alignment:
| Q |
172 |
aaaaactagcatcctcccttaattcaagttctctagcttcaccattccaatcatgcatcttaa |
234 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||| |||||| |
|
|
| T |
1834117 |
aaaaactaacatcctcccttaattcaagttttctagcttctccattccaatcatgcttcttaa |
1834055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 388
Target Start/End: Complemental strand, 1834028 - 1833936
Alignment:
| Q |
296 |
ggacaatgtatgaccttaagcatttatttattcacttgttctctgataaagtgaaatattgcctctatgtgtttacttctgacatgcaacact |
388 |
Q |
| |
|
||||||||| |||| |||||| ||| | ||||| |||||||| |||||||||||| ||||||| |||||||| |||| ||||||||||| |
|
|
| T |
1834028 |
ggacaatgtttgacattaagccttttctcgttcacatgttctcttataaagtgaaatcttgcctcaatgtgtttgtttctttcatgcaacact |
1833936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 160 - 254
Target Start/End: Complemental strand, 2207107 - 2207013
Alignment:
| Q |
160 |
ctaacttgaattaaaaactagcatcctcccttaattcaagttctctagcttcaccattccaatcatgcatcttaacttgacaaatctgtcaatct |
254 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| ||||||||||||||| ||||||||||||||||| | |||||| |||| |||| ||||||||| |
|
|
| T |
2207107 |
ctaacttgaattaaaacctaccatcctccctaaattcaagttctctacattcaccattccaatcatacttcttaatttgataaatatgtcaatct |
2207013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 280 - 505
Target Start/End: Complemental strand, 6240571 - 6240343
Alignment:
| Q |
280 |
tagttgttcctcaatgggacaatgtatgaccttaagcatttatttattcacttgttctctgataaagtgaaatattgcctctatgtgtttacttctgaca |
379 |
Q |
| |
|
||||||| ||||| | |||||||||||| ||||||||||| || |||||||||||||||| | ||||||||| || ||| |||||||| ||||| || |
|
|
| T |
6240571 |
tagttgtccctcagtttgacaatgtatgatcttaagcatttcttcattcacttgttctctggtgaagtgaaatcttctctcaatgtgtttgcttcttcca |
6240472 |
T |
|
| Q |
380 |
tgcaacacttggtttttagttaaatctatagc--atattgttatcaacgagcaacgcagtaagcttgcaaacttctatcttcagttctcttaacacataa |
477 |
Q |
| |
|
|| | || | | || |||| ||||||||| || || || ||||||| ||| || ||| || ||||||| ||||||||||||| |||| | ||| ||||| |
|
|
| T |
6240471 |
tgaagcattagattcttagctaaatctatggcagatttttttatcaatgagaaatgcaataggcttgcatacttctatcttcatttctttcaacccataa |
6240372 |
T |
|
| Q |
478 |
t-cagccatattgtttgacatgcagctaa |
505 |
Q |
| |
|
| || |||||||| |||||||| ||||| |
|
|
| T |
6240371 |
tccaaccatattgcgtgacatgctgctaa |
6240343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 479
Target Start/End: Complemental strand, 6211695 - 6211435
Alignment:
| Q |
220 |
aatcatgcatcttaacttgacaaatctgtcaatctctacatcttttgtaagcacatcagatagttgttcctcaatgggacaatgtatgaccttaagcatt |
319 |
Q |
| |
|
|||||||| |||||| | ||||||| || | |||| ||| |||| |||| || |||| ||||||| ||| | | ||||| ||||||| |||||||||| |
|
|
| T |
6211695 |
aatcatgcttcttaattggacaaatatgccgatcttcacaactttagtaaacaaatcatctagttgtcccttagttggacagtgtatgatcttaagcatt |
6211596 |
T |
|
| Q |
320 |
tatttattcacttgttctctgataaagtgaaatattgcctctatgtgtttacttctgacatgcaacacttggtttttagttaaatctat--agcatattg |
417 |
Q |
| |
|
| || |||||||||||||||| | ||||||||| || ||| |||||||| ||||| |||| | || | | || |||| ||||||||| || || || |
|
|
| T |
6211595 |
tcttcattcacttgttctctggtgaagtgaaatcttctctcaatgtgtttgcttcttccatgaagcattagattcttagctaaatctatgcag-attttt |
6211497 |
T |
|
| Q |
418 |
ttatcaacgagcaacgcagtaagcttgcaaacttctatcttcagttctcttaacacataatc |
479 |
Q |
| |
|
||||||| ||| || ||| || ||||||||||||||||||||| |||| | ||| ||||||| |
|
|
| T |
6211496 |
ttatcaatgagaaatgcaataggcttgcaaacttctatcttcatttctttcaacccataatc |
6211435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 22580951 - 22580908
Alignment:
| Q |
159 |
tctaacttgaattaa-aaactagcatcctcccttaattcaagtt |
201 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
22580951 |
tctaacttgaattaacaaactaacatcctcccttaattcaagtt |
22580908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 160 - 388
Target Start/End: Original strand, 16943727 - 16943954
Alignment:
| Q |
160 |
ctaacttgaattaaaaactagcatcctcccttaattcaagttctctagcttcaccattccaatcatgcatcttaacttgacaaatctgtcaatctctaca |
259 |
Q |
| |
|
|||||||||||||||| ||| |||| |||||||||| ||||| || | |||||||||| |||||| | ||| ||||||||||||||||||| | ||| |
|
|
| T |
16943727 |
ctaacttgaattaaaa-ctaacatcttcccttaatttaagttatcaaacttcaccattttaatcatacttctcaacttgacaaatctgtcaactttcaca |
16943825 |
T |
|
| Q |
260 |
tcttttgtaagcacatcagatagttgttcctcaatgggacaatgtatgaccttaagcatttatttattcacttgttctctgataaagtgaaatattgcct |
359 |
Q |
| |
|
||||||| | | ||||| | ||||||| || | |||||||| || ||||| |||| | || ||||| || ||||||||||||||||| ||| || |
|
|
| T |
16943826 |
acttttgttaaaaaatcagctggttgttcttcttttggacaatggataaccttcagcacatccttgttcacctgctctctgataaagtgaaaccttgtct |
16943925 |
T |
|
| Q |
360 |
ctatgtgtttacttctgacatgcaacact |
388 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |
|
|
| T |
16943926 |
ctatgtgtttgcttctaccatgcaacact |
16943954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 160 - 388
Target Start/End: Original strand, 17014392 - 17014619
Alignment:
| Q |
160 |
ctaacttgaattaaaaactagcatcctcccttaattcaagttctctagcttcaccattccaatcatgcatcttaacttgacaaatctgtcaatctctaca |
259 |
Q |
| |
|
|||||||||||||||| ||| |||| |||||||||| ||||| || | |||||||||| |||||| | ||| ||||||||||||||||||| | ||| |
|
|
| T |
17014392 |
ctaacttgaattaaaa-ctaacatcttcccttaatttaagttatcaaacttcaccattttaatcatacttctcaacttgacaaatctgtcaactttcaca |
17014490 |
T |
|
| Q |
260 |
tcttttgtaagcacatcagatagttgttcctcaatgggacaatgtatgaccttaagcatttatttattcacttgttctctgataaagtgaaatattgcct |
359 |
Q |
| |
|
||||||| | | ||||| | ||||||| || | |||||||| || ||||| |||| | || ||||| || ||||||||||||||||| ||| || |
|
|
| T |
17014491 |
acttttgttaaaaaatcagctggttgttcttcttttggacaatggataaccttcagcacatccttgttcacctgctctctgataaagtgaaaccttgtct |
17014590 |
T |
|
| Q |
360 |
ctatgtgtttacttctgacatgcaacact |
388 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |
|
|
| T |
17014591 |
ctatgtgtttgcttctaccatgcaacact |
17014619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 341 - 409
Target Start/End: Original strand, 15489883 - 15489951
Alignment:
| Q |
341 |
ataaagtgaaatattgcctctatgtgtttacttctgacatgcaacacttggtttttagttaaatctata |
409 |
Q |
| |
|
|||||||||||||||| ||| |||||||| ||||| ||||||||||| || |||| |||||||||| |
|
|
| T |
15489883 |
ataaagtgaaatattgtctcaatgtgtttgcttcttccatgcaacactgaattcttagctaaatctata |
15489951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 24650799 - 24650715
Alignment:
| Q |
160 |
ctaacttgaattaaaaactagcatcctcccttaattcaagttctctagcttcaccattccaatcatgcatcttaacttgacaaat |
244 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| | || |||||||||||||||||||| || | | |||||||||||||| |
|
|
| T |
24650799 |
ctaacttgaattaaaaactaatatcctcccttaattccaattttctagcttcaccattccaattatactttttaacttgacaaat |
24650715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 8855260 - 8855325
Alignment:
| Q |
158 |
atctaacttgaattaaaaactagcatcctcccttaattcaagttctctagcttcaccattccaatca |
224 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||| || | ||||||||||||||||| |
|
|
| T |
8855260 |
atctaacttgaattaaaa-ctaacatcctcccttaattcaagttttccaacttcaccattccaatca |
8855325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 14454394 - 14454339
Alignment:
| Q |
197 |
aagttctctagcttcaccattccaatcatgcatcttaacttgacaaatctgtcaat |
252 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||| |||| ||||||| |||| |
|
|
| T |
14454394 |
aagttctctaacttcaccattccaatcatgcctcttaatttgaaaaatctgacaat |
14454339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 15565070 - 15565135
Alignment:
| Q |
158 |
atctaacttgaattaaaaactagcatcctcccttaattcaagttctctagcttcaccattccaatca |
224 |
Q |
| |
|
|||||||||||||||||| ||| ||| | |||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
15565070 |
atctaacttgaattaaaa-ctaacattgttccttaattcaagttttctagcttcacccttccaatca |
15565135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 3597640 - 3597599
Alignment:
| Q |
160 |
ctaacttgaattaaaaactagcatcctcccttaattcaagtt |
201 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
3597640 |
ctaacttgaattatcaactaacatcctcccttaattcaagtt |
3597599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 17782341 - 17782419
Alignment:
| Q |
160 |
ctaacttgaattaaaaactagcatcctcccttaattcaagttctctagcttcaccattccaatcatgcatcttaacttga |
239 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||| || | |||||||| ||||||| || ||||| ||||| |
|
|
| T |
17782341 |
ctaacttgaattaacaactaacatcctcccttaattcaagtt-tccactttcaccataccaatcaagcttcttagcttga |
17782419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 1299087 - 1299048
Alignment:
| Q |
162 |
aacttgaattaaaaactagcatcctcccttaattcaagtt |
201 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
1299087 |
aacttgaattagaaactaacatcctcccttaattcaagtt |
1299048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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