View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5941_high_4 (Length: 375)
Name: NF5941_high_4
Description: NF5941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5941_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 21 - 361
Target Start/End: Original strand, 40605541 - 40605882
Alignment:
| Q |
21 |
tgaaactccgctcagaactaaactgaaactcaaaattgatattagattttgttttagaaaatttctaaacccagatcaaaccaaagatttttgcatgtta |
120 |
Q |
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| T |
40605541 |
tgaaactccgctcagaactaaactgaaactcaaaaatgatattagattttgttttagaaaatttctaaacccagatcaaaccaaagatttttgcatgtta |
40605640 |
T |
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| Q |
121 |
tgttttttatgttcaaatctcaatttttaataacacaatcctttttattcctccaaaaaagaaataaacaattcatttttataaaacaagcactcatgaa |
220 |
Q |
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| T |
40605641 |
tgttttttatgttgaaatctcaatttttaataacacaatcctttttattcctccaaaaaagaaataaacaattcatttttataaaacaagcactcacgaa |
40605740 |
T |
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| Q |
221 |
gacaattttgaacttacaagtatatgcatatctatggctatattta-ttttagcatctagagttggtttctgagaatgtaaaaaatgccaattgtgcaaa |
319 |
Q |
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| T |
40605741 |
gacaattttaaacttacaagtatatgcatatctatggctatatttatttttagcatctagagttggtttctgagaatgtaaaaaatgccaattgtgcaaa |
40605840 |
T |
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| Q |
320 |
tatttgaatagagtgacacattttttattttaatgaaagaat |
361 |
Q |
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| T |
40605841 |
tatttgaatagagtgacacattttttattttaatgaaagaat |
40605882 |
T |
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