View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5941_high_5 (Length: 355)

Name: NF5941_high_5
Description: NF5941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5941_high_5
NF5941_high_5
[»] chr3 (42 HSPs)
chr3 (1-341)||(6752385-6752726)
chr3 (192-332)||(2927197-2927336)
chr3 (201-339)||(6075000-6075135)
chr3 (192-339)||(14752278-14752423)
chr3 (192-339)||(46557271-46557417)
chr3 (201-341)||(28875324-28875462)
chr3 (192-339)||(46711727-46711874)
chr3 (204-341)||(50651105-50651240)
chr3 (192-339)||(7866553-7866698)
chr3 (201-339)||(41476399-41476534)
chr3 (201-339)||(579208-579355)
chr3 (201-341)||(35963067-35963208)
chr3 (192-341)||(20847336-20847487)
chr3 (194-341)||(26725059-26725205)
chr3 (192-339)||(33974629-33974774)
chr3 (250-341)||(38674835-38674926)
chr3 (192-335)||(54464969-54465106)
chr3 (225-339)||(8703052-8703163)
chr3 (225-339)||(9054939-9055050)
chr3 (201-339)||(19463992-19464129)
chr3 (202-322)||(37074877-37074995)
chr3 (226-305)||(12236658-12236735)
chr3 (255-330)||(41936268-41936343)
chr3 (203-321)||(29235113-29235229)
chr3 (192-341)||(3972175-3972331)
chr3 (192-341)||(3997547-3997703)
chr3 (201-248)||(51311589-51311636)
chr3 (201-243)||(50730024-50730066)
chr3 (201-243)||(50782786-50782828)
chr3 (245-341)||(26207974-26208070)
chr3 (279-339)||(47864185-47864245)
chr3 (279-339)||(48802550-48802610)
chr3 (201-248)||(47867074-47867121)
chr3 (279-341)||(6438077-6438139)
chr3 (201-247)||(8764821-8764867)
chr3 (285-339)||(23311663-23311717)
chr3 (285-339)||(37042487-37042541)
chr3 (192-230)||(51255110-51255148)
chr3 (201-258)||(31836870-31836927)
chr3 (280-341)||(47866981-47867041)
chr3 (279-339)||(36546536-36546596)
chr3 (279-339)||(36561719-36561779)
[»] chr2 (31 HSPs)
chr2 (192-339)||(11616928-11617074)
chr2 (192-339)||(28858214-28858359)
chr2 (192-339)||(29524151-29524296)
chr2 (207-322)||(9864844-9864958)
chr2 (192-339)||(19264004-19264150)
chr2 (192-339)||(8701506-8701652)
chr2 (192-339)||(25571949-25572096)
chr2 (270-339)||(40584508-40584577)
chr2 (192-341)||(33198739-33198890)
chr2 (255-341)||(44454957-44455043)
chr2 (192-341)||(35022801-35022949)
chr2 (207-341)||(5963122-5963253)
chr2 (192-294)||(18454970-18455070)
chr2 (192-282)||(5280648-5280736)
chr2 (192-308)||(40808851-40808968)
chr2 (256-341)||(24204637-24204722)
chr2 (207-339)||(6766044-6766173)
chr2 (226-341)||(12938177-12938294)
chr2 (192-341)||(45660267-45660417)
chr2 (279-339)||(28599258-28599318)
chr2 (273-341)||(30830704-30830772)
chr2 (201-341)||(39696907-39697050)
chr2 (279-339)||(45085247-45085307)
chr2 (279-339)||(41528246-41528306)
chr2 (270-341)||(33677464-33677535)
chr2 (195-230)||(44803823-44803858)
chr2 (285-339)||(35517119-35517173)
chr2 (279-339)||(3201316-3201376)
chr2 (279-331)||(6110319-6110371)
chr2 (279-327)||(7645352-7645400)
chr2 (225-289)||(30752083-30752146)
[»] chr5 (28 HSPs)
chr5 (192-339)||(38280750-38280897)
chr5 (192-339)||(34425235-34425381)
chr5 (192-339)||(38130227-38130372)
chr5 (201-339)||(20643928-20644064)
chr5 (192-339)||(25840768-25840914)
chr5 (201-331)||(104341-104467)
chr5 (192-339)||(8225368-8225511)
chr5 (201-339)||(4463273-4463410)
chr5 (200-339)||(19413053-19413191)
chr5 (212-341)||(5984224-5984355)
chr5 (192-339)||(39505343-39505488)
chr5 (192-339)||(9957529-9957672)
chr5 (203-339)||(20039018-20039152)
chr5 (212-339)||(41625621-41625748)
chr5 (207-341)||(17351301-17351440)
chr5 (192-341)||(42273554-42273699)
chr5 (200-336)||(32110915-32111049)
chr5 (201-341)||(7071152-7071290)
chr5 (201-341)||(43454432-43454571)
chr5 (192-248)||(12730187-12730243)
chr5 (279-339)||(11261995-11262055)
chr5 (279-339)||(37562873-37562933)
chr5 (285-339)||(6686380-6686434)
chr5 (192-230)||(16286281-16286319)
chr5 (285-339)||(43590073-43590127)
chr5 (285-341)||(445998-446054)
chr5 (250-322)||(1238487-1238559)
chr5 (279-339)||(32017694-32017754)
[»] chr4 (30 HSPs)
chr4 (192-339)||(39078060-39078205)
chr4 (192-339)||(4058617-4058763)
chr4 (201-335)||(52535693-52535827)
chr4 (192-339)||(35310846-35310992)
chr4 (192-339)||(35529574-35529720)
chr4 (192-329)||(48793740-48793875)
chr4 (193-341)||(5483380-5483526)
chr4 (192-339)||(42915432-42915577)
chr4 (201-339)||(29203419-29203554)
chr4 (201-322)||(10069608-10069728)
chr4 (200-332)||(17794652-17794785)
chr4 (202-320)||(12002758-12002874)
chr4 (225-341)||(32323364-32323481)
chr4 (201-322)||(19351751-19351877)
chr4 (262-339)||(20716151-20716228)
chr4 (279-341)||(14583717-14583779)
chr4 (196-329)||(8683418-8683549)
chr4 (201-322)||(21722787-21722907)
chr4 (192-233)||(26916259-26916300)
chr4 (279-339)||(14332748-14332808)
chr4 (192-248)||(17186975-17187031)
chr4 (279-339)||(28669104-28669164)
chr4 (279-339)||(50080555-50080615)
chr4 (279-339)||(56318174-56318234)
chr4 (270-341)||(50145715-50145786)
chr4 (264-339)||(55580642-55580717)
chr4 (285-339)||(47867873-47867927)
chr4 (288-341)||(24940362-24940415)
chr4 (279-339)||(20281579-20281639)
chr4 (279-339)||(41414714-41414774)
[»] chr1 (43 HSPs)
chr1 (203-339)||(45226053-45226188)
chr1 (192-339)||(6785361-6785506)
chr1 (192-339)||(6786742-6786888)
chr1 (192-339)||(15959751-15959896)
chr1 (192-329)||(28016865-28017000)
chr1 (192-339)||(33369458-33369601)
chr1 (200-339)||(1820328-1820465)
chr1 (192-339)||(47600150-47600296)
chr1 (192-339)||(24728738-24728883)
chr1 (201-339)||(47014602-47014739)
chr1 (203-339)||(3875132-3875268)
chr1 (201-341)||(33431474-33431611)
chr1 (256-339)||(50665230-50665313)
chr1 (192-329)||(44148953-44149088)
chr1 (192-305)||(4672804-4672915)
chr1 (192-339)||(3076200-3076345)
chr1 (192-339)||(50012490-50012641)
chr1 (193-322)||(1034761-1034891)
chr1 (192-339)||(7468074-7468209)
chr1 (201-341)||(23392275-23392411)
chr1 (255-341)||(39932681-39932767)
chr1 (200-253)||(47026407-47026460)
chr1 (193-341)||(10558865-10559012)
chr1 (203-322)||(11240961-11241076)
chr1 (279-339)||(32983281-32983341)
chr1 (192-341)||(46542886-46543034)
chr1 (201-339)||(6787101-6787238)
chr1 (207-341)||(37735492-37735631)
chr1 (279-339)||(32624116-32624176)
chr1 (261-339)||(13136664-13136739)
chr1 (278-339)||(28120866-28120927)
chr1 (279-339)||(12449078-12449138)
chr1 (225-307)||(30221680-30221759)
chr1 (279-339)||(39555697-39555757)
chr1 (279-339)||(42965925-42965985)
chr1 (270-318)||(52984873-52984921)
chr1 (192-231)||(2125973-2126012)
chr1 (280-339)||(40718669-40718728)
chr1 (285-339)||(35691388-35691442)
chr1 (201-332)||(2246132-2246260)
chr1 (193-230)||(28916716-28916753)
chr1 (291-339)||(2126040-2126088)
chr1 (296-340)||(43359697-43359741)
[»] chr8 (30 HSPs)
chr8 (192-339)||(34890286-34890431)
chr8 (212-339)||(31734037-31734163)
chr8 (201-339)||(24892750-24892886)
chr8 (192-339)||(13143667-13143812)
chr8 (193-329)||(2052739-2052874)
chr8 (192-339)||(4047006-4047151)
chr8 (192-331)||(13144081-13144218)
chr8 (193-339)||(8711780-8711925)
chr8 (192-339)||(36190674-36190820)
chr8 (192-339)||(28348515-28348659)
chr8 (202-332)||(29920387-29920518)
chr8 (200-339)||(35456136-35456273)
chr8 (201-339)||(7499637-7499774)
chr8 (192-301)||(35525501-35525608)
chr8 (201-333)||(34158409-34158539)
chr8 (200-339)||(41755835-41755974)
chr8 (193-302)||(41808952-41809059)
chr8 (212-341)||(43216457-43216586)
chr8 (259-340)||(16879503-16879583)
chr8 (192-338)||(8107730-8107876)
chr8 (270-329)||(8709906-8709965)
chr8 (279-339)||(7858516-7858576)
chr8 (192-248)||(30576028-30576084)
chr8 (192-332)||(33563634-33563767)
chr8 (196-267)||(27819585-27819655)
chr8 (285-339)||(7022515-7022569)
chr8 (192-230)||(32678708-32678746)
chr8 (291-339)||(3642081-3642129)
chr8 (279-339)||(15824743-15824803)
chr8 (279-331)||(15958033-15958085)
[»] chr6 (6 HSPs)
chr6 (193-339)||(7274986-7275132)
chr6 (192-258)||(9428690-9428756)
chr6 (270-341)||(17751853-17751924)
chr6 (273-341)||(12461538-12461606)
chr6 (285-339)||(11082356-11082410)
chr6 (285-341)||(30794301-30794357)
[»] chr7 (27 HSPs)
chr7 (192-339)||(25944481-25944626)
chr7 (201-339)||(20123790-20123926)
chr7 (192-339)||(4910743-4910888)
chr7 (201-339)||(9158004-9158140)
chr7 (204-341)||(15995631-15995771)
chr7 (201-321)||(4237843-4237957)
chr7 (200-339)||(22632000-22632139)
chr7 (270-341)||(14574545-14574616)
chr7 (270-341)||(19492503-19492574)
chr7 (270-341)||(27810843-27810914)
chr7 (201-248)||(35069034-35069081)
chr7 (192-282)||(47778677-47778765)
chr7 (285-339)||(19912879-19912933)
chr7 (212-298)||(34751687-34751772)
chr7 (270-322)||(2610695-2610747)
chr7 (207-341)||(11779939-11780070)
chr7 (279-339)||(18102520-18102580)
chr7 (275-339)||(47779590-47779654)
chr7 (285-339)||(14805866-14805920)
chr7 (285-339)||(15252860-15252914)
chr7 (285-339)||(25737737-25737791)
chr7 (285-339)||(35923248-35923302)
chr7 (192-230)||(36576338-36576376)
chr7 (285-339)||(45485951-45486005)
chr7 (264-329)||(48413696-48413760)
chr7 (200-248)||(42045023-42045071)
chr7 (192-248)||(48413643-48413699)
[»] scaffold0132 (2 HSPs)
scaffold0132 (192-339)||(917-1062)
scaffold0132 (192-339)||(8877-9022)
[»] scaffold0009 (2 HSPs)
scaffold0009 (201-341)||(52711-52853)
scaffold0009 (192-339)||(157699-157844)
[»] scaffold0012 (1 HSPs)
scaffold0012 (221-339)||(160179-160300)
[»] scaffold0062 (1 HSPs)
scaffold0062 (221-339)||(44882-44999)
[»] scaffold1786 (1 HSPs)
scaffold1786 (201-312)||(779-887)
[»] scaffold0018 (1 HSPs)
scaffold0018 (192-231)||(154797-154836)
[»] scaffold0005 (1 HSPs)
scaffold0005 (279-341)||(233596-233658)
[»] scaffold0442 (1 HSPs)
scaffold0442 (279-339)||(10035-10095)
[»] scaffold0774 (1 HSPs)
scaffold0774 (297-339)||(3539-3581)
[»] scaffold0111 (1 HSPs)
scaffold0111 (200-339)||(40092-40229)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 9e-95; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 6752385 - 6752726
Alignment:
Q  1 aattaaagtt-gaccgaaagataattaaaatccggccaattttaannnnnnnnactcaagaacattacgctcataactagaat--actcatcacttattt 97  Q
    |||||||||| |||| |||||||||||||||||||||||||||||        | ||||||||||||||||||||||||||||  |||||||||||||||    
T  6752385 aattaaagtttgaccaaaagataattaaaatccggccaattttaattttttttaatcaagaacattacgctcataactagaatttactcatcacttattt 6752484  T
Q  98 tctttcttaaattggtgaagaaggaaaattattattaattactccatatgttaatccctccataccaaaatgtaagtgataaannnnnnnnnnnctttgt 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| ||||||           ||||||    
T  6752485 tctttcttaaattggtgaagaaggaaaattattattaattactccatatg-taatccctccataccagattgtaagcgataaa--acttattttctttgt 6752581  T
Q  198 cttaaaatataagtaaaaaagataaacttttatcctgtttaatc-ttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatga 296  Q
    | |||||| ||||||||||||| ||||||||||||| ||||||| || |||| ||||||||| ||||||||  |||||||||||||||||||||||||||    
T  6752582 cctaaaatttaagtaaaaaagacaaacttttatcctatttaatcttttttttttttagaaaaccatctttttcaagaaaaacttttgcttattttcatga 6752681  T
Q  297 aattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    ||||||||||| |||| ||||| ||||||||||||| ||||||||    
T  6752682 aattaaatgcaaattacattcattttcctctctcttccattttct 6752726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 192 - 332
Target Start/End: Original strand, 2927197 - 2927336
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    ||||||||||||||||||| |||||||| ||||||||||  | |||||||||||||| |  | |||||||||||||| || ||||||||||||||||| |    
T  2927197 ctttgtcttaaaatataagcaaaaaagacaaacttttattatatttaatcttgtttt-taaaaaaaatcatcttttccaataaaaacttttgcttattct 2927295  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctt 332  Q
    ||||||||||||| || |||| ||| ||||| |||||||||    
T  2927296 catgaaattaaatacaaattacatttaattttctctctctt 2927336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 201 - 339
Target Start/End: Original strand, 6075000 - 6075135
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaatt 300  Q
    |||||||||| |||||||| |||| |||||||| |||||||||||||| ||||  ||||| ||||||  |||||||||||||| ||||| |||| |||||    
T  6075000 aaaatataagcaaaaaagacaaacatttatcctatttaatcttgtttttttta--aaatc-tctttttcaagaaaaacttttgtttattctcataaaatt 6075096  T
Q  301 aaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||||| |||| ||||||||| ||||||||||||||||    
T  6075097 aaatgcaaattacattcaattttctctctctttcatttt 6075135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 192 - 339
Target Start/End: Complemental strand, 14752423 - 14752278
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||| |||||||| ||||||||||| | |||||||||||||| |||| |||||| | ||||| |||||||||||||  ||||| |    
T  14752423 ctttgtcccaaaatataagcaaaaaagacaaacttttatcttatttaatcttgtttt-tttaaaaaatctt-ttttccaagaaaaacttttctttattct 14752326  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| |||||||||||| |||| ||||||||| ||||||||||||||||    
T  14752325 cataaaattaaatgcaaattacattcaattttctctctctttcatttt 14752278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 192 - 339
Target Start/End: Complemental strand, 46557417 - 46557271
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||||||||||||||||||||||| ||| |||||| || |||||  ||||||| |  | |||||||| ||||| || ||||||||||||||||| |    
T  46557417 ctttgtcttaaaatataagtaaaaaagacaaatttttattctatttaactttgtttt-taaaaaaaatcatattttccaataaaaacttttgcttattct 46557319  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    |||||||||||||| | |||| ||| ||||| ||||||||||||||||    
T  46557318 catgaaattaaatgtaaattacatttaattttctctctctttcatttt 46557271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 201 - 341
Target Start/End: Original strand, 28875324 - 28875462
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaatt 300  Q
    |||||||||| |||||| ||||||||||||| | |||||||||||||| |  | |||||| ||||||| |||||||||||||| ||||| |||| |||||    
T  28875324 aaaatataagcaaaaaatataaacttttatcttatttaatcttgtttt-taaaaaaaatc-tcttttctaagaaaaacttttgtttattctcataaaatt 28875421  T
Q  301 aaatgcatattatattcaatttcctctctctttcattttct 341  Q
    |||| || |||| ||||||||| || | |||||||||||||    
T  28875422 aaatacaaattacattcaattttctttttctttcattttct 28875462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 192 - 339
Target Start/End: Complemental strand, 46711874 - 46711727
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||| |||||||||| | |||| | ||||||||||||| ||||||||| || | |  | ||||   ||||||| |||||||||||||| |||||||    
T  46711874 ctttgtctcaaaatataagcataaaaaacaaacttttatcctatttaatctttttctttaaaaaaaactctcttttccaagaaaaacttttgtttatttt 46711775  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| ||||||||| || |||| |||||| || ||||||||||||||||    
T  46711774 cataaaattaaatacaaattacattcaaatttctctctctttcatttt 46711727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 204 - 341
Target Start/End: Complemental strand, 50651240 - 50651105
Alignment:
Q  204 atataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaattaaa 303  Q
    ||||||| |||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| ||  |     |||| ||||| |||| ||||||||    
T  50651240 atataagcaaaaaagataaacttttatcctatttaatcttgtttt-tttaaaaaatcatcttttccaa-tattttgtttgattattctcataaaattaaa 50651143  T
Q  304 tgcatattatattcaatttcctctctctttcattttct 341  Q
    |||| |||| ||||||||| |||||||||| |||||||    
T  50651142 tgcaaattacattcaattttctctctcttttattttct 50651105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 192 - 339
Target Start/End: Complemental strand, 7866698 - 7866553
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||  |||||||| ||||||||||||| |||||||||| ||| |||| |||||  ||||||  |||||||||||||| ||||| |    
T  7866698 ctttgtcccaaaatataaacaaaaaagacaaacttttatcctatttaatcttgattt-tttaaaaaatt-tctttttcaagaaaaacttttgtttattct 7866601  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| |||||||||| | |||| ||||||||| || ||||||| |||||    
T  7866600 cataaaattaaatgaaaattacattcaattttctatctcttttatttt 7866553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 201 - 339
Target Start/End: Complemental strand, 41476534 - 41476399
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaatt 300  Q
    ||||||||| ||||||||| |||||||||||||  |||||||| |||| |||| ||||||   ||||| |||||||||||||| ||||| |||| |||||    
T  41476534 aaaatataa-taaaaaagacaaacttttatcctaattaatcttatttt-tttaaaaaatctatttttc-aagaaaaacttttgtttattctcataaaatt 41476438  T
Q  301 aaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||||| |||| ||||||||| || || ||||||||||    
T  41476437 aaatgcaaattagattcaattttctttccctttcatttt 41476399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 339
Target Start/End: Complemental strand, 579355 - 579208
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgttt----------agaaaatcatcttttcgaagaaaaacttttgcttattt 290  Q
    ||||||||||||||||||| ||||||||||||| |||||| || |||| |||          | |||||| ||||||| |||||||||||||| ||| |     
T  579355 aaaatataagtaaaaaagacaaacttttatcctatttaatttttttttattttatttaaaaaaaaaaatc-tcttttccaagaaaaacttttgtttaatc 579257  T
Q  291 tcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    |||| |||||||||||| |||| ||||||||| ||||||||||||||||    
T  579256 tcataaaattaaatgcaaattacattcaattttctctctctttcatttt 579208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 341
Target Start/End: Original strand, 35963067 - 35963208
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaa-tcatcttttcgaagaaaaacttttgcttattttcatgaaat 299  Q
    |||||||||| ||||| || | |||||| |||| ||||||||||||||    | |||| |||||||||| |||||| ||||||| ||||| |||| ||||    
T  35963067 aaaatataagcaaaaatgacacacttttctcctatttaatcttgtttttaaaaaaaaaatcatcttttctaagaaatacttttgtttattctcataaaat 35963166  T
Q  300 taaatgcatattatattcaatttcctctctctttcattttct 341  Q
    |||||||| |||  ||| ||||| ||||||||||||||||||    
T  35963167 taaatgcaaattgcatttaattttctctctctttcattttct 35963208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 192 - 341
Target Start/End: Complemental strand, 20847487 - 20847336
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgttt--agaaaatcatcttttcgaagaaaaacttttgcttatt 289  Q
    |||||||  ||| ||||||||||||||||||||| ||| | | |||||||| ||||| ||   | |||| ||||||||  ||||||||||||| | ||||    
T  20847487 ctttgtcccaaattataagtaaaaaagataaactattaccttatttaatctagtttttttataaaaaaaccatctttttcaagaaaaacttttacatatt 20847388  T
Q  290 ttcatgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
     |||| |||||||||||| |||| |||||||||   ||||||||||||||||    
T  20847387 ctcataaaattaaatgcaaattacattcaatttttcctctctttcattttct 20847336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 341
Target Start/End: Complemental strand, 26725205 - 26725059
Alignment:
Q  194 ttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttca 293  Q
    ||||| |||||| ||||||||||||| |||||||||||   |||||||||||| | |||| ||||||||| ||   |||||||||||||  ||||| |||    
T  26725205 ttgtcctaaaatgtaagtaaaaaagacaaacttttatctaatttaatcttgttat-tttaaaaaatcatccttcaaaagaaaaacttttatttattctca 26725107  T
Q  294 tgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    |||||||| ||||| |||| ||||| |||  ||||||||  |||||||    
T  26725106 tgaaattatatgcaaattacattcagttttatctctcttctattttct 26725059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 339
Target Start/End: Complemental strand, 33974774 - 33974629
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||| |||||||||| |||||||| |||||||| || | |||||||||||||| || | |||||| | ||||  |||||| | ||||| ||||| |    
T  33974774 ctttgtctcaaaatataagcaaaaaagacaaacttttttcatatttaatcttgtttt-ttgaaaaaatc-tattttttaagaaagatttttgtttattct 33974677  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| |||||||||||| |||| ||| ||||| || |||||||||||||    
T  33974676 cataaaattaaatgcaaattacattaaattttctttctctttcatttt 33974629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 250 - 341
Target Start/End: Original strand, 38674835 - 38674926
Alignment:
Q  250 tttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    |||| |||| ||| ||||| |||||||||||| ||||||| | |||||||||||| || |||| ||||||||| ||||||||||||||||||    
T  38674835 tttaaaaaaccattttttccaagaaaaactttagcttattcttatgaaattaaatacaaattagattcaattttctctctctttcattttct 38674926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 335
Target Start/End: Complemental strand, 54465106 - 54464969
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    ||||||| ||||||||||| |||||||||||| ||||||| | ||||||||| |||| |     ||||| | ||| | |||||||||||||| ||||| |    
T  54465106 ctttgtcctaaaatataagcaaaaaagataaatttttatcttatttaatcttttttttt-----aaatctt-tttcccaagaaaaacttttgtttattct 54465013  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttca 335  Q
    ||| |||||||| ||| |||| ||||||||| ||||||||||||    
T  54465012 cataaaattaaacgcaaattacattcaattttctctctctttca 54464969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 225 - 339
Target Start/End: Original strand, 8703052 - 8703163
Alignment:
Q  225 ttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaattaaatgcatattatattcaatttcc 324  Q
    ||||||||| |||||||||||||| |||| |||||| ||||||| || |||||||| |  ||||| |||| |||||||||||| |||| ||| ||||| |    
T  8703052 ttttatcctatttaatcttgttttttttaaaaaatc-tcttttccaaaaaaaacttgt--ttattctcataaaattaaatgcaaattacattaaattttc 8703148  T
Q  325 tctctctttcatttt 339  Q
    | |||||||||||||    
T  8703149 tttctctttcatttt 8703163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 225 - 339
Target Start/End: Original strand, 9054939 - 9055050
Alignment:
Q  225 ttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaattaaatgcatattatattcaatttcc 324  Q
    ||||||||| |||||||||||||| |||| |||||| ||||||| || |||||||| |  ||||| |||| |||||||||||| |||| ||| ||||| |    
T  9054939 ttttatcctatttaatcttgttttttttaaaaaatc-tcttttccaaaaaaaacttgt--ttattctcataaaattaaatgcaaattacattaaattttc 9055035  T
Q  325 tctctctttcatttt 339  Q
    | |||||||||||||    
T  9055036 tttctctttcatttt 9055050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 339
Target Start/End: Original strand, 19463992 - 19464129
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaatt 300  Q
    |||||||||| | |||||| |||||||||| || ||||||||||||||    | |||||| ||||||  |||||||||||||| ||||| |||| || |     
T  19463992 aaaatataagcagaaaagacaaacttttattctatttaatcttgtttttaaaaaaaaatc-tctttttcaagaaaaacttttgtttattctcataaactg 19464090  T
Q  301 aaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||||| |||| |||||| ||  |||||||||||||||    
T  19464091 aaatgcaaattacattcaactttttctctctttcatttt 19464129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 322
Target Start/End: Original strand, 37074877 - 37074995
Alignment:
Q  202 aaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaatta 301  Q
    ||||||||| |||||||| ||||||||||||| ||||||||||||||  | | |||||| ||||||  |||||  | ||||| ||||| |||| ||||||    
T  37074877 aaatataagcaaaaaagacaaacttttatcctatttaatcttgtttttctaaaaaaatc-tctttttcaagaatta-ttttgtttattctcataaaatta 37074974  T
Q  302 aatgcatattatattcaattt 322  Q
    |||||| |||| |||||||||    
T  37074975 aatgcaaattacattcaattt 37074995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 305
Target Start/End: Complemental strand, 12236735 - 12236658
Alignment:
Q  226 tttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaattaaatg 305  Q
    |||||||| |||||||||  ||| |||| |||| ||||||||||||||||||||||| |||||| |||||||||||||||    
T  12236735 tttatcctatttaatcttacttt-ttta-aaaaccatcttttcgaagaaaaacttttacttattatcatgaaattaaatg 12236658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 330
Target Start/End: Complemental strand, 41936343 - 41936268
Alignment:
Q  255 aaaatcatcttttcgaagaaaaacttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctc 330  Q
    |||||||||||||| || |||||||||| |||||| |||||||| |||||||| |||  ||||||||| |||||||    
T  41936343 aaaatcatcttttccaataaaaacttttacttattctcatgaaactaaatgcaaattgcattcaattttctctctc 41936268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 321
Target Start/End: Original strand, 29235113 - 29235229
Alignment:
Q  203 aatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaattaa 302  Q
    |||||||| |||||||  ||||||||||||| ||||||||| |||| |||| |||||| ||||||| ||||||   ||||| ||||| |||| |||||||    
T  29235113 aatataagcaaaaaaggcaaacttttatcctatttaatcttatttt-tttaaaaaatc-tcttttccaagaaatttttttgtttattatcattaaattaa 29235210  T
Q  303 atgcatattatattcaatt 321  Q
    ||| | |||| ||||||||    
T  29235211 atgtaaattacattcaatt 29235229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 341
Target Start/End: Original strand, 3972175 - 3972331
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatc----ttttcgaagaaaaacttt---tgc 284  Q
    |||||||  ||||| |||| |||||||||||||||||||    |||||||||||||| || | ||||| | |    ||||  ||||||||||||   | |    
T  3972175 ctttgtcccaaaatgtaagcaaaaaagataaacttttatttcatttaatcttgtttttttaaaaaaataaccattttttttcaagaaaaactttattttc 3972274  T
Q  285 ttattttcatgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    ||||| ||||||||||||||||| |||| |||||||||  |||||||| ||||||||    
T  3972275 ttattctcatgaaattaaatgcaaattacattcaatttgttctctcttccattttct 3972331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 341
Target Start/End: Complemental strand, 3997703 - 3997547
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatc----ttttcgaagaaaaacttt---tgc 284  Q
    |||||||  ||||| |||| |||||||||||||||||||    |||||||||||||| || | ||||| | |    ||||  ||||||||||||   | |    
T  3997703 ctttgtcccaaaatgtaagcaaaaaagataaacttttatttcatttaatcttgtttttttaaaaaaataaccattttttttcaagaaaaactttattttc 3997604  T
Q  285 ttattttcatgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    ||||| ||||||||||||||||| |||| |||||||||  |||||||| ||||||||    
T  3997603 ttattctcatgaaattaaatgcaaattacattcaatttgttctctcttccattttct 3997547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 51311589 - 51311636
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgtttt 248  Q
    ||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  51311589 aaaatataagtaaaaaagacaaatttttatcctatttaatcttgtttt 51311636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 50730024 - 50730066
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatctt 243  Q
    ||||||||||||||||||||||| ||||||||| |||||||||    
T  50730024 aaaatataagtaaaaaagataaatttttatcctatttaatctt 50730066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 50782828 - 50782786
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatctt 243  Q
    ||||||||||||||||||||||| ||||||||| |||||||||    
T  50782828 aaaatataagtaaaaaagataaatttttatcctatttaatctt 50782786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 341
Target Start/End: Original strand, 26207974 - 26208070
Alignment:
Q  245 ttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    |||| |||| |||| ||| ||||  |||||||||||||||||||| |||| || | ||||||  |||| ||||||||| |||| |||| ||||||||    
T  26207974 ttttttttaaaaaaccatatttttcaagaaaaacttttgcttattctcataaattcaaatgccaattacattcaattttctctttcttccattttct 26208070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 47864185 - 47864245
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| ||||| |||| |||||||||||| |||| |||||||||  |||||||||||||||    
T  47864185 ttttgtttattctcataaaattaaatgcaaattacattcaattttttctctctttcatttt 47864245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 48802610 - 48802550
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| ||||| |||| ||| |||||||| |||| ||||||||| ||||||||||||||||    
T  48802610 ttttgtttattctcataaaagtaaatgcaaattacattcaattttctctctctttcatttt 48802550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 47867121 - 47867074
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgtttt 248  Q
    ||||| ||||||||||||| ||| ||||||||| ||||||||||||||    
T  47867121 aaaatgtaagtaaaaaagacaaatttttatcctatttaatcttgtttt 47867074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 6438077 - 6438139
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    ||||| ||||| |||| |||||||||||| |||| ||| |||||  |||||||||||||||||    
T  6438077 ttttgtttattctcataaaattaaatgcaaattacatttaattttatctctctttcattttct 6438139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 8764867 - 8764821
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttt 247  Q
    ||||| |||| |||||||| ||||||||||||| |||||||||||||    
T  8764867 aaaatttaagcaaaaaagacaaacttttatcctatttaatcttgttt 8764821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 23311717 - 23311663
Alignment:
Q  285 ttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| |||| |||||||||| |||||| ||||||||| |||| |||||||||||    
T  23311717 ttattctcataaaattaaatgtatattacattcaattttctctttctttcatttt 23311663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 37042541 - 37042487
Alignment:
Q  285 ttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| |||| |||||||||||| |||| ||||||||| |||| |||||||||||    
T  37042541 ttattctcataaaattaaatgcaaattacattcaattttctctttctttcatttt 37042487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 51255110 - 51255148
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttat 230  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  51255110 ctttgtctcaaaatataagtaaaaaagatcaacttttat 51255148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 31836870 - 31836927
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaa 258  Q
    ||||| |||| |||||| | ||||||||||||| |||||||||||||| |||| ||||    
T  31836870 aaaatgtaagcaaaaaatacaaacttttatcctatttaatcttgttttttttaaaaaa 31836927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 341
Target Start/End: Complemental strand, 47867041 - 47866981
Alignment:
Q  280 tttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    |||||||||| |||| |||||||||||| |||| ||||||||| ||||||||| || |||||    
T  47867041 tttgcttattctcat-aaattaaatgcaaattacattcaattttctctctcttccactttct 47866981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 36546536 - 36546596
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| ||||| |||| |||||||||||| |||| ||| ||||  ||||||||||||||||    
T  36546536 ttttgtttattctcataaaattaaatgcaaattacattaaattctctctctctttcatttt 36546596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 36561779 - 36561719
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| ||||| |||| |||||||||||| |||| ||| ||||  ||||||||||||||||    
T  36561779 ttttgtttattctcataaaattaaatgcaaattacattaaattctctctctctttcatttt 36561719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 11616928 - 11617074
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||  |||||| ||||||| ||||||||||||||||||||||    
T  11616928 ctttgtcctaaaatataagtaaaaaagataaacttttatcctatttaatcttgtttttttttaaaaatc-tcttttccaagaaaaacttttgcttatttt 11617026  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| |||| ||||||| |||  ||||||||| |||||||||| |||||    
T  11617027 cataaaataaaatgcaaatttcattcaattttctctctcttttatttt 11617074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 28858214 - 28858359
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    ||||||| ||||||||||| |||||| | ||||||||||||| |||||||||||||| ||||||||||| ||||| | |||||||||||||| ||||| |    
T  28858214 ctttgtcctaaaatataagcaaaaaatacaaacttttatcctatttaatcttgtttt-tttagaaaatc-tctttcccaagaaaaacttttgtttattct 28858311  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| |||||||||||| |||| ||||||||| ||||||||||||||||    
T  28858312 cataaaattaaatgcaaattacattcaattttctctctctttcatttt 28858359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 192 - 339
Target Start/End: Complemental strand, 29524296 - 29524151
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  ||||||||||||||||||| |||||||||| || |||||| |||||||  | | |||||||| ||||| || |||||||||| |||||| |    
T  29524296 ctttgtcccaaaatataagtaaaaaagacaaacttttattctatttaatattgtttt--taaaaaaatcatattttccaataaaaactttttcttattct 29524199  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    |||||||||||||||| |||| ||| ||||| |||||||||| |||||    
T  29524198 catgaaattaaatgcaaattacatttaattttctctctcttttatttt 29524151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 207 - 322
Target Start/End: Complemental strand, 9864958 - 9864844
Alignment:
Q  207 taagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaattaaatgc 306  Q
    |||| |||||||| ||||||||||||| |||||| ||||||| |||| |||| ||||||||| ||||||||| |||||||||| ||||||||||||||||    
T  9864958 taagcaaaaaagacaaacttttatcctatttaattttgtttttttta-aaaaccatcttttccaagaaaaacatttgcttattctcatgaaattaaatgc 9864860  T
Q  307 atattatattcaattt 322  Q
    | |||| |||||||||    
T  9864859 aaattacattcaattt 9864844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 19264004 - 19264150
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||| |||||||| ||||||||||| | |||||||||||||| |||| |||||| | ||||| |||||||||||||| ||||| |    
T  19264004 ctttgtcccaaaatataagcaaaaaagacaaacttttatcttatttaatcttgtttt-tttaaaaaatc-ttttttccaagaaaaacttttgtttattct 19264101  T
Q  292 catgaaattaaatgc-atattatattcaatttcctctctctttcatttt 339  Q
    ||| ||||||||||| | |||| ||||||||| |||||||||| |||||    
T  19264102 cataaaattaaatgcaaaattacattcaattttctctctctttaatttt 19264150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 8701506 - 8701652
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||| |||||||||||||  |||||||| ||||||||||  | |||||||||||||| || | |||||||||||||| || |||||||||||||| || |    
T  8701506 ctttatcttaaaatataaacaaaaaagacaaacttttattatatttaatcttgtttt-ttaaaaaaatcatcttttccaataaaaacttttgcttgttct 8701604  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||||||||||| || |||  ||| ||||| ||||||||| ||||||    
T  8701605 catgaaattaaatacaaatttcatttaattttctctctcttccatttt 8701652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 25571949 - 25572096
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||| |||||| | |||||||||| || |||||||||||||| |  | |||||||||||||| || ||    ||||||||||| |    
T  25571949 ctttgtcccaaaatataagcaaaaaaaacaaacttttattctatttaatcttgttttttaaaaaaaatcatcttttccaataattttttttgcttattct 25572048  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    |||||||||||||||| |||| ||| ||||| ||||||||| ||||||    
T  25572049 catgaaattaaatgcaaattacatttaattttctctctcttccatttt 25572096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 40584577 - 40584508
Alignment:
Q  270 aagaaaaacttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    |||||||||||||| ||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||    
T  40584577 aagaaaaacttttgtttattttcatgaaattaaatgcaaattacattcaattttctctctctttcatttt 40584508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 192 - 341
Target Start/End: Complemental strand, 33198890 - 33198739
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaa---tcatcttttcgaagaaaaacttttgcttat 288  Q
    |||||||  |||||||||| |||||||| ||| ||||||||| |||||||||||||| |||| ||||   |||||||||| ||||     ||||| ||||    
T  33198890 ctttgtcccaaaatataagcaaaaaagacaaaattttatcctatttaatcttgttttttttaaaaaaaaatcatcttttccaagatttt-ttttgtttat 33198792  T
Q  289 tttcatgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    | ||||  ||||||||||| |||| ||||||||| ||||||||||||||||||    
T  33198791 tctcatagaattaaatgcaaattacattcaattttctctctctttcattttct 33198739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 255 - 341
Target Start/End: Original strand, 44454957 - 44455043
Alignment:
Q  255 aaaatcatcttttcgaagaaaaacttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    |||||||||||||| |||||||||| ||||||||| ||||||||||||||||| |||| |||||||||   ||||||| ||||||||    
T  44454957 aaaatcatcttttcaaagaaaaactcttgcttattctcatgaaattaaatgcaaattacattcaatttttcctctcttccattttct 44455043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 341
Target Start/End: Original strand, 35022801 - 35022949
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    ||||||| |||||| |||| |||||||| |||| ||||| || |||||||||||||| |||| ||||  |||||||| || |||| |||||| ||  | |    
T  35022801 ctttgtcctaaaatgtaagcaaaaaagacaaacatttatactatttaatcttgtttt-tttaaaaaactatcttttccaacaaaatcttttgttttatct 35022899  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    ||| |||||||||||| ||| |||||||||| ||||||||  ||||||||    
T  35022900 cattaaattaaatgcaaattgtattcaattttctctctctaccattttct 35022949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 207 - 341
Target Start/End: Original strand, 5963122 - 5963253
Alignment:
Q  207 taagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaattaaatgc 306  Q
    ||||||||||| |||||||||| |||| |||||| ||||||| |   |||||| || ||||  |||||||||||||  ||||| | |||| |||||||||    
T  5963122 taagtaaaaaaaataaacttttgtcctatttaattttgtttttt---gaaaataatatttttcaagaaaaacttttctttattcttatgacattaaatgc 5963218  T
Q  307 atattatattcaatttcctctctctttcattttct 341  Q
    | |||| ||||||||| ||||||||| ||||||||    
T  5963219 aaattacattcaattttctctctcttccattttct 5963253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 294
Target Start/End: Original strand, 18454970 - 18455070
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    ||||||| ||||||||||| |||||||||||| ||||||  | |||||||||||||  || | |||||||||||||| || ||||||||||||||||| |    
T  18454970 ctttgtcctaaaatataagcaaaaaagataaatttttattttatttaatcttgttt--ttaaaaaaatcatcttttccaataaaaacttttgcttattct 18455067  T
Q  292 cat 294  Q
    |||    
T  18455068 cat 18455070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 192 - 282
Target Start/End: Complemental strand, 5280736 - 5280648
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaactttt 282  Q
    |||||||  |||||||||| |||||||| ||| ||||||||| |||||||||||||| ||||||||||| ||||||| |||||||||||||    
T  5280736 ctttgtcccaaaatataagcaaaaaagacaaatttttatcctatttaatcttgtttt-tttagaaaatc-tcttttccaagaaaaactttt 5280648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 192 - 308
Target Start/End: Complemental strand, 40808968 - 40808851
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaac-ttttgcttattt 290  Q
    |||||||  |||||||||| |||||||| ||| |||||| || |||||||| ||||| |  | |||||||||||||| || |||||| |||| ||||||     
T  40808968 ctttgtcccaaaatataagcaaaaaagacaaatttttattctatttaatctcgttttttaaaaaaaatcatcttttccaataaaaacttttttcttattc 40808869  T
Q  291 tcatgaaattaaatgcat 308  Q
    ||||||||||||||||||    
T  40808868 tcatgaaattaaatgcat 40808851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 256 - 341
Target Start/End: Complemental strand, 24204722 - 24204637
Alignment:
Q  256 aaatcatcttttcgaagaaaaacttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    ||||||||||||  |||||||| ||| | ||||| |||||| |||||||| | |||||||||||||| ||||||||| ||||||||    
T  24204722 aaatcatctttttcaagaaaaaatttagtttattctcatgatattaaatgtaaattatattcaattttctctctcttccattttct 24204637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 339
Target Start/End: Complemental strand, 6766173 - 6766044
Alignment:
Q  207 taagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaattaaatgc 306  Q
    ||||||||||||||||| ||||||  | ||| |||||| ||| |||   ||| |||||||||  | |||| |||||| ||||| |||| ||||||||||     
T  6766173 taagtaaaaaagataaatttttattgtatttgatcttgattttttt---aaaccatcttttccgataaaagcttttgtttattctcattaaattaaatgt 6766077  T
Q  307 atattatattcaatttcctctctctttcatttt 339  Q
    | |||| ||||||||| ||||||||| ||||||    
T  6766076 aaattacattcaattttctctctcttccatttt 6766044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 226 - 341
Target Start/End: Original strand, 12938177 - 12938294
Alignment:
Q  226 tttatcctgtttaatcttgttttgtttagaaaa--tcatcttttcgaagaaaaacttttgcttattttcatgaaattaaatgcatattatattcaatttc 323  Q
    |||||||| |||||||||||||| || | ||||  | |||| ||  |||||||||||||| ||||| ||||||||||||||||| |||| |||||  ||     
T  12938177 tttatcctatttaatcttgtttttttaaaaaaaaattatctctttcaagaaaaacttttgtttattctcatgaaattaaatgcaaattacattcatattt 12938276  T
Q  324 ctctctctttcattttct 341  Q
     ||||||||| |||||||    
T  12938277 atctctcttttattttct 12938294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 341
Target Start/End: Original strand, 45660267 - 45660417
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttg-ttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattt 290  Q
    |||||||  |||||||||| |||||| | ||||||||||||| |||||||||| ||||    | |||||||||||||  || ||    ||||| |||||     
T  45660267 ctttgtcccaaaatataagcaaaaaaaacaaacttttatcctatttaatcttggttttaaaaaaaaaatcatctttttcaataattgtttttgtttattc 45660366  T
Q  291 tcatgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    |||| |||||||||||| |||| ||| |||||  |||||||||||||||||    
T  45660367 tcataaaattaaatgcaaattacatttaattttatctctctttcattttct 45660417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 28599318 - 28599258
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| ||||| |||| ||||||||||||||||| ||||||||| |||| |||||||||||    
T  28599318 ttttgtttattctcataaaattaaatgcatattacattcaattttctctttctttcatttt 28599258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 273 - 341
Target Start/End: Complemental strand, 30830772 - 30830704
Alignment:
Q  273 aaaaacttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    ||||| ||||| ||||| ||||||||||||||||| |||| || |||||| |||||| |||||||||||    
T  30830772 aaaaatttttgattattctcatgaaattaaatgcaaattacatacaattttctctctttttcattttct 30830704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 201 - 341
Target Start/End: Complemental strand, 39697050 - 39696907
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatctttt-------cgaagaaaaacttttgcttattttca 293  Q
    ||||| ||| ||||||||||||||||||||||| |||||||||||||| ||    ||||||||||||         || |||||| |||| ||||| |||    
T  39697050 aaaatgtaaataaaaaagataaacttttatcctatttaatcttgttttttt----aaatcatctttttcaaacaaaaaaaaaaacgtttgtttattctca 39696955  T
Q  294 tgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
     ||||||||||||| |||| ||| ||||| |||| |||| ||||||||    
T  39696954 cgaaattaaatgcaaattacatttaattttctctttcttccattttct 39696907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 45085247 - 45085307
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| ||||| |||| |||||||||||| |||| ||||||||| ||||||||||||||||    
T  45085247 ttttgtttattctcataaaattaaatgcaaattacattcaattttctctctctttcatttt 45085307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 41528246 - 41528306
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| ||||| |||| |||||||||||| |||| ||||||||| |||| |||||||||||    
T  41528246 ttttgtttattctcataaaattaaatgcaaattacattcaattttctctttctttcatttt 41528306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 341
Target Start/End: Original strand, 33677464 - 33677535
Alignment:
Q  270 aagaaaaacttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    |||||||||||||| ||||| ||||||||||||||||  || | ||||||||| || ||||||  |||||||    
T  33677464 aagaaaaacttttgtttattctcatgaaattaaatgctaataacattcaattttctttctcttcaattttct 33677535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 230
Target Start/End: Original strand, 44803823 - 44803858
Alignment:
Q  195 tgtcttaaaatataagtaaaaaagataaacttttat 230  Q
    ||||| ||||||||||||||||||||||||||||||    
T  44803823 tgtctcaaaatataagtaaaaaagataaacttttat 44803858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 35517119 - 35517173
Alignment:
Q  285 ttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| |||| |||||||||||| |||| ||||||||| |||| |||||||||||    
T  35517119 ttattctcataaaattaaatgcaaattacattcaattttctctttctttcatttt 35517173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 3201316 - 3201376
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| ||||| |||| |||||||||||| |||| |||||||||  ||| |||||||||||    
T  3201316 ttttgtttattctcataaaattaaatgcaaattacattcaattttatctttctttcatttt 3201376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 331
Target Start/End: Complemental strand, 6110371 - 6110319
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctct 331  Q
    ||||| ||||| |||| |||||||||||| |||| ||||||||| ||||||||    
T  6110371 ttttgtttattctcataaaattaaatgcaaattacattcaattttctctctct 6110319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 327
Target Start/End: Complemental strand, 7645400 - 7645352
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctct 327  Q
    ||||| ||||| ||||||||||||||||| |||| ||||||||| ||||    
T  7645400 ttttgtttattctcatgaaattaaatgcaaattacattcaattttctct 7645352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 30752083 - 30752146
Alignment:
Q  225 ttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatt 289  Q
    ||||||||| ||||||||| |||| |||| |||  ||||||||| ||||||||||||| ||||||    
T  30752083 ttttatcctatttaatcttatttt-tttaaaaacccatcttttccaagaaaaacttttacttatt 30752146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 38280750 - 38280897
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||| ||||||||| ||||||||| ||||||||||||| ||||||||| |||| |||| ||||   | ||||  |||||||||||||| ||||| |    
T  38280750 ctttgtctcaaaatataaataaaaaagacaaacttttatcctatttaatcttattttttttaaaaaaaactatttttcaagaaaaacttttgtttattct 38280849  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| |||||||||||| |||||||||||||| ||||||||||||||||    
T  38280850 cataaaattaaatgcaaattatattcaattttctctctctttcatttt 38280897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 34425235 - 34425381
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    ||||||| ||||||||||| |||||||| ||||||||||||  |||||| ||||||| || | |||||| ||||||  |||||||||||||| ||||| |    
T  34425235 ctttgtcctaaaatataagcaaaaaagacaaacttttatcccatttaattttgtttttttaaaaaaatc-tctttttcaagaaaaacttttgtttattct 34425333  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| |||||||||||| |||||||||||||| |||||||||| |||||    
T  34425334 cataaaattaaatgcaaattatattcaattttctctctcttttatttt 34425381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 192 - 339
Target Start/End: Complemental strand, 38130372 - 38130227
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  ||||||||||||||||||||||| |||||| || |||||||||||||| |||| | |||| ||||||| |||||||||||||| ||||| |    
T  38130372 ctttgtcccaaaatataagtaaaaaagataaatttttattctatttaatcttgtttt-tttaaagaatc-tcttttctaagaaaaacttttgtttattct 38130275  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| |||||||||| | |||| ||||||||| ||||||||||||||||    
T  38130274 cataaaattaaatgtagattacattcaattttctctctctttcatttt 38130227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 201 - 339
Target Start/End: Original strand, 20643928 - 20644064
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaatt 300  Q
    |||||||||| |||||||| ||||||||||| | |||||||||||||| |||| |||||| | ||||| |||||||||||||| ||||| ||||||||||    
T  20643928 aaaatataagcaaaaaagacaaacttttatcttatttaatcttgtttt-tttaaaaaatctt-ttttccaagaaaaacttttgtttattctcatgaaatt 20644025  T
Q  301 aaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||||| |||| ||||||||| | ||||||||||||||    
T  20644026 aaatgcaaattacattcaattttccctctctttcatttt 20644064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 25840768 - 25840914
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||| ||||| || |||||||||| || |||||||||||||| || | |||||||||||||| || |||||||||| |||||| |    
T  25840768 ctttgtcccaaaatataagcaaaaatgacaaacttttattctatttaatcttgtttt-ttaaaaaaatcatcttttccaataaaaactttttcttattct 25840866  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    |||||||||||||||| |||| ||| ||||| |||||||||| |||||    
T  25840867 catgaaattaaatgcaaattacatttaattttctctctcttttatttt 25840914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 201 - 331
Target Start/End: Complemental strand, 104467 - 104341
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaatt 300  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||| |||   ||||| | ||||| ||||||||||||||  |||| |||| |||||    
T  104467 aaaatataagtaaaaaagacaaacttttatcctatttaatcttgtttttttt---aaatctttttttc-aagaaaaacttttgtctattctcataaaatt 104372  T
Q  301 aaatgcatattatattcaatttcctctctct 331  Q
    |||||||||||| ||||||||| ||||||||    
T  104371 aaatgcatattacattcaattttctctctct 104341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 8225368 - 8225511
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||| |||||||| ||||||||||| | |||||||||||||| || | |||||| ||||||| |||||||||||||| ||||| |    
T  8225368 ctttgtcccaaaatataagcaaaaaagacaaacttttatcatatttaatcttgtttt-ttaaaaaaatc-tcttttccaagaaaaacttttgtttattct 8225465  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| |||||||||||| ||||  ||||||||  |||||||||||||||    
T  8225466 cataaaattaaatgcaaattacgttcaattt--tctctctttcatttt 8225511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 201 - 339
Target Start/End: Original strand, 4463273 - 4463410
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaatt 300  Q
    |||||||||| |||||||| ||||||||||  | |||||||||||||| |  |  ||||||||||||| || ||||||||||||||||  ||||||||||    
T  4463273 aaaatataagaaaaaaagacaaacttttattatatttaatcttgtttt-taaaagaaatcatcttttccaataaaaacttttgcttatactcatgaaatt 4463371  T
Q  301 aaatgcatattatattcaatttcctctctctttcatttt 339  Q
    || |||| |||| ||| ||||| ||||||||||||||||    
T  4463372 aattgcaaattacatttaattttctctctctttcatttt 4463410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 200 - 339
Target Start/End: Original strand, 19413053 - 19413191
Alignment:
Q  200 taaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaat 299  Q
    ||||||||||| |||||||||||||||||||  | ||||||||||||||    | |||||||||||||| || |||||||||| | |||| |||||||||    
T  19413053 taaaatataagcaaaaaagataaacttttattttatttaatcttgttttaaaaa-aaaatcatcttttccaataaaaactttttcatattctcatgaaat 19413151  T
Q  300 taaatgcatattatattcaatttcctctctctttcatttt 339  Q
    |||||||| |||| ||| ||||| | |||||||| |||||    
T  19413152 taaatgcaaattacatttaattttccctctcttttatttt 19413191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 341
Target Start/End: Complemental strand, 5984355 - 5984224
Alignment:
Q  212 aaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaa--tcatcttttcgaagaaaaacttttgcttattttcatgaaattaaatgcata 309  Q
    |||||||| ||||||||||||| |||||||||||||| |||   |||  |||||||||| ||||| |||||||| ||||| |||| |||||||||| | |    
T  5984355 aaaaaagacaaacttttatcctatttaatcttgtttttttttttaaaagtcatcttttccaagaacaacttttgtttattctcataaaattaaatgtaaa 5984256  T
Q  310 ttatattcaatttcctctctctttcattttct 341  Q
    ||| ||| ||| | ||||||||||||||||||    
T  5984255 ttacattaaatattctctctctttcattttct 5984224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 339
Target Start/End: Complemental strand, 39505488 - 39505343
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||| |||||||| ||||||||||  | ||||||||| ||||  | | ||||  |||||||| || |||||||||| |||||| |    
T  39505488 ctttgtcccaaaatataagcaaaaaagacaaacttttattttatttaatcttatttt--taaaaaaaatatcttttccaataaaaactttttcttattct 39505391  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    |||||||||||||||| |||| ||| ||||| |||||||||| |||||    
T  39505390 catgaaattaaatgcaaattacatttaattttctctctcttttatttt 39505343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 192 - 339
Target Start/End: Complemental strand, 9957672 - 9957529
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||| |||||||| ||||||||||| | |||||||||  ||| |||| ||| || | ||||| |||||||||||||| ||||| |    
T  9957672 ctttgtcccaaaatataagcaaaaaagacaaacttttatcttatttaatcttacttt-tttaaaaactctt-ttttccaagaaaaacttttgtttattct 9957575  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| |||||||||||| |||| |||||| ||  |||||||||||||||    
T  9957574 cataaaattaaatgcaaattacattcaactt--tctctctttcatttt 9957529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 203 - 339
Target Start/End: Original strand, 20039018 - 20039152
Alignment:
Q  203 aatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaattaa 302  Q
    |||||||| |||| ||| |||||||||||||  |||||||| |||| |||| |||||| | ||||| |||||||||||||| | ||| |||| |||||||    
T  20039018 aatataagcaaaacagacaaacttttatcctacttaatcttctttt-tttaaaaaatc-tattttccaagaaaaacttttgttaattctcataaaattaa 20039115  T
Q  303 atgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| |||| ||| ||||| || |||||||||||||    
T  20039116 atgcaaattacatttaattttctatctctttcatttt 20039152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 339
Target Start/End: Complemental strand, 41625748 - 41625621
Alignment:
Q  212 aaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaattaaatgcatatt 311  Q
    |||||||||||| |||||| || |||| |||||||||    | |||||||||||||| || |||||||| || |||||||||||||||||||| || |||    
T  41625748 aaaaaagataaatttttattctatttattcttgtttttaaaaaaaaatcatcttttccaacaaaaacttatgtttattttcatgaaattaaattcaaatt 41625649  T
Q  312 atattcaatttcctctctctttcatttt 339  Q
    | ||| ||||| | ||||||| ||||||    
T  41625648 acatttaattttccctctcttccatttt 41625621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 207 - 341
Target Start/End: Original strand, 17351301 - 17351440
Alignment:
Q  207 taagtaaaaaagataaacttttatcctgtttaatcttgttttgttt----agaaaatcatcttttcgaag-aaaaacttttgcttattttcatgaaatta 301  Q
    |||| |||||||| ||||||||||||| ||||||||| |||| ||     | |||| ||||||||| ||| ||||||||| ||||||| |||||||||||    
T  17351301 taagcaaaaaagacaaacttttatcctatttaatcttttttttttctttcaaaaaaccatcttttctaaggaaaaactttagcttattctcatgaaatta 17351400  T
Q  302 aatgcatattatattcaatttcctctctctttcattttct 341  Q
    |||| | |||| ||||||||| |||||| | |||||||||    
T  17351401 aatgaaaattacattcaattttctctctatgtcattttct 17351440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 192 - 341
Target Start/End: Original strand, 42273554 - 42273699
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||| |||||||| ||||||||||||| |||||||||||||| |  | |||||||||||||| ||| |    ||||| ||||| |    
T  42273554 ctttgtcccaaaatataagcaaaaaagacaaacttttatcctatttaatcttgtttt-taaaaaaaatcatcttttccaag-attttttttgtttattct 42273651  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    ||| |||||||||||| |||  |||||||||  |||||||||||||||||    
T  42273652 cataaaattaaatgcaaattgcattcaattt--tctctctttcattttct 42273699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 336
Target Start/End: Original strand, 32110915 - 32111049
Alignment:
Q  200 taaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaat 299  Q
    ||||||||||| |||||||| |||| |||||||| |||||||||||||| |  | |||||| | ||||| ||||||   ||||| ||||| |||| ||||    
T  32110915 taaaatataagcaaaaaagacaaacatttatcctatttaatcttgtttt-taaaaaaaatc-tgttttccaagaaatttttttgtttattctcataaaat 32111012  T
Q  300 taaatgcatattatattcaatttcctctctctttcat 336  Q
    |||||||| |||| ||| ||||| |||||||||||||    
T  32111013 taaatgcaaattacatttaattttctctctctttcat 32111049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 341
Target Start/End: Original strand, 7071152 - 7071290
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaatt 300  Q
    ||||||||||  ||||||| ||||||||||| | |||||| || |||| |||| |||| ||| | ||  ||||||||||||| |||||| ||||||||||    
T  7071152 aaaatataagcgaaaaagacaaacttttatcttatttaattttttttt-tttaaaaaa-catttatttcaagaaaaacttttacttattctcatgaaatt 7071249  T
Q  301 aaatgcatattatattcaatttcctctctctttcattttct 341  Q
    |||| || |||| ||||||||| | | ||||| ||||||||    
T  7071250 aaatacaaattacattcaattttcacgctcttccattttct 7071290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 341
Target Start/End: Complemental strand, 43454571 - 43454432
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaatt 300  Q
    ||||| |||| |||| | || ||| |||||||| |||||| ||||||| |||| ||||  |||||||  |||||||||||||| ||| | ||||  ||||    
T  43454571 aaaatgtaagcaaaatacattaacatttatcctatttaatattgtttt-tttaaaaaacaatcttttttaagaaaaacttttgtttaatctcatagaatt 43454473  T
Q  301 aaatgcatattatattcaatttcctctctctttcattttct 341  Q
    ||||| | |||| ||||||||| |||||||||| |||||||    
T  43454472 aaatgtaaattacattcaattttctctctcttttattttct 43454432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 12730243 - 12730187
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgtttt 248  Q
    |||||||  ||||||||||||||||||| ||||||||||||| ||||| ||||||||    
T  12730243 ctttgtcccaaaatataagtaaaaaagacaaacttttatcctatttaaccttgtttt 12730187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 11262055 - 11261995
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| ||||| |||| |||||||||||| |||| ||||||||| |||| |||||||||||    
T  11262055 ttttgtttattctcataaaattaaatgcaaattacattcaattttctctttctttcatttt 11261995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 37562933 - 37562873
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| ||||| |||| |||||||||||| |||| ||||||||| |||| |||||||||||    
T  37562933 ttttgtttattctcataaaattaaatgcaaattacattcaattttctctgtctttcatttt 37562873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 6686380 - 6686434
Alignment:
Q  285 ttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| |||| |||||||||||| |||| ||||||||| |||| |||||||||||    
T  6686380 ttattctcataaaattaaatgcaaattacattcaattttctctttctttcatttt 6686434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 16286319 - 16286281
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttat 230  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  16286319 ctttgtctcaaaatataagtaaaaaagacaaacttttat 16286281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 43590127 - 43590073
Alignment:
Q  285 ttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| |||| |||||||||||| |||| ||||||||| |||| |||||||||||    
T  43590127 ttattctcataaaattaaatgcaaattacattcaattttctctttctttcatttt 43590073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 446054 - 445998
Alignment:
Q  285 ttattttcatgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    ||||| ||||||||||||||| | |||  |||||||||  |||||||||||||||||    
T  446054 ttattatcatgaaattaaatgaaaattgcattcaattttttctctctttcattttct 445998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 322
Target Start/End: Original strand, 1238487 - 1238559
Alignment:
Q  250 tttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaattaaatgcatattatattcaattt 322  Q
    |||| |||| ||||||||| ||||||||||||| |||||| | || ||||||||  || |||| |||||||||    
T  1238487 tttaaaaaaccatcttttctaagaaaaacttttacttattcttataaaattaaaaacaaattacattcaattt 1238559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 32017694 - 32017754
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| ||||| |||| |||||||||||| |||| |||||| || ||||||||||| ||||    
T  32017694 ttttgtttattctcataaaattaaatgcaaattacattcaactttctctctctttcgtttt 32017754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 39078060 - 39078205
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  ||||||||||||||||||| ||||||||||||| ||||| |||||||| |||| |||||| ||||||| |||||||||||||| ||||| |    
T  39078060 ctttgtcccaaaatataagtaaaaaagacaaacttttatcctatttaaccttgtttt-tttataaaatc-tcttttccaagaaaaacttttgtttattct 39078157  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| |||||||||||| |||| ||||||||| || |||||||||||||    
T  39078158 cataaaattaaatgcacattacattcaattttctttctctttcatttt 39078205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 4058617 - 4058763
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    ||||||| ||||||||||| |||||||| ||||||||||||| |||||||||||||| || | |||||| | ||||| |||||||||||||  ||||| |    
T  4058617 ctttgtcctaaaatataagcaaaaaagacaaacttttatcctatttaatcttgtttt-ttaaaaaaatctttttttccaagaaaaacttttatttattct 4058715  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| |||||||||||| |||  ||||||||| ||||||||||||||||    
T  4058716 cataaaattaaatgcaaatttcattcaattttctctctctttcatttt 4058763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 201 - 335
Target Start/End: Complemental strand, 52535827 - 52535693
Alignment:
Q  201 aaaatataagtaaaaaagataaact-tttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaat 299  Q
    |||||||||| |||||||||||| | |||||||| |||||||||||||| || | |||||| ||||||| |||||||||||||| ||||| |||| ||||    
T  52535827 aaaatataagcaaaaaagataaaatatttatcctatttaatcttgtttttttaaaaaaatc-tcttttccaagaaaaacttttgtttattctcataaaat 52535729  T
Q  300 taaatgcatattatattcaatttcctctctctttca 335  Q
    |||||||| |||||||||||||| ||||||||||||    
T  52535728 taaatgcaaattatattcaattttctctctctttca 52535693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 192 - 339
Target Start/End: Complemental strand, 35310992 - 35310846
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    ||||||||||||||||||| |||||||| ||||||||||  | |||||||||||||| || | |||||||||||||  || ||||||||||| ||||| |    
T  35310992 ctttgtcttaaaatataagcaaaaaagacaaacttttattatatttaatcttgtttt-ttaaaaaaatcatctttttcaataaaaacttttgtttattct 35310894  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||||||||||| || |||| ||| ||||| ||||||||| ||||||    
T  35310893 catgaaattaaatacaaattacatttaattttctctctcttccatttt 35310846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 35529574 - 35529720
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||| |||||||| |||||||||| || |||||||||||||| |||| |||||| ||||||| |||||||| ||||| ||||  |    
T  35529574 ctttgtcccaaaatataagcaaaaaagacaaacttttattctatttaatcttgttttttttaaaaaatc-tcttttccaagaaaaagttttgtttatgct 35529672  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| |||||||||||| ||||  ||||||||  |||||||||||||||    
T  35529673 cataaaattaaatgcaaattactttcaattttatctctctttcatttt 35529720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 48793875 - 48793740
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||| | |||||| |||||||||| || ||||||||||||||  ||| |||||||||||||| || |||||||||| |||||| |    
T  48793875 ctttgtcccaaaatataagcataaaagacaaacttttattctatttaatcttgtttt--ttaaaaaatcatcttttccaataaaaactttttcttattct 48793778  T
Q  292 catgaaattaaatgcatattatattcaatttcctctct 329  Q
    |||||||||||||||| |||| ||| ||||| ||||||    
T  48793777 catgaaattaaatgcaaattacatttaattttctctct 48793740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 193 - 341
Target Start/End: Complemental strand, 5483526 - 5483380
Alignment:
Q  193 tttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttc 292  Q
    ||||||| ||||| ||||||||||||| ||| ||||||| | |||| ||||  |||    | |||||||||| ||| |||||||||||||| ||||| ||    
T  5483526 tttgtctcaaaatgtaagtaaaaaagacaaatttttatcatatttattctt--tttaaaaaaaaaatcatctattccaagaaaaacttttgtttattctc 5483429  T
Q  293 atgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    |||||||||||||||||||| ||||||||| ||||||||| ||||||||    
T  5483428 atgaaattaaatgcatattacattcaattttctctctcttccattttct 5483380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 42915432 - 42915577
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||| |||||||| ||||||||||  | ||||||||||||||  | | |||||||| ||||| || |||||||||| |||||| |    
T  42915432 ctttgtcccaaaatataagcaaaaaagacaaacttttattatatttaatcttgtttt--taaaaaaatcatattttccaataaaaactttttcttattct 42915529  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    |||||||||||||||| |||| ||| ||||| |||||||||| |||||    
T  42915530 catgaaattaaatgcaaattacatttaattttctctctcttttatttt 42915577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 201 - 339
Target Start/End: Original strand, 29203419 - 29203554
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaatt 300  Q
    |||||||||| |||||||| ||||||||||| | |||||||||||||| |||  ||||  |    ||| |||||||||||||| ||||| |||| |||||    
T  29203419 aaaatataagcaaaaaagacaaacttttatcttatttaatcttgtttttttttaaaaaaaaa---ttccaagaaaaacttttgtttattctcataaaatt 29203515  T
Q  301 aaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||||| |||| ||||||||| ||||||||||||||||    
T  29203516 aaatgcaaattacattcaattttctctctctttcatttt 29203554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 201 - 322
Target Start/End: Original strand, 10069608 - 10069728
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaatt 300  Q
    |||||||||| |||||||| ||||||||||||| |||||||||||| | || | |||||| ||||| | |||||||||||||| ||||| |||| |||||    
T  10069608 aaaatataagcaaaaaagaaaaacttttatcctatttaatcttgttcttttaaaaaaatc-tctttcccaagaaaaacttttgtttattctcataaaatt 10069706  T
Q  301 aaatgcatattatattcaattt 322  Q
    ||||||| || | |||||||||    
T  10069707 aaatgcaaataacattcaattt 10069728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 200 - 332
Target Start/End: Complemental strand, 17794785 - 17794652
Alignment:
Q  200 taaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaa---aaacttttgcttattttcatga 296  Q
    ||||||||||| ||||| |||||||||||||||| |||||||||||||| |||| || ||||||||||| || ||   ||||||||| ||||| |||| |    
T  17794785 taaaatataagcaaaaa-gataaacttttatcctatttaatcttgtttt-tttaaaatatcatcttttccaataataaaaacttttgtttattctcataa 17794688  T
Q  297 aattaaatgcatattatattcaatttcctctctctt 332  Q
    ||||||||| | |||| ||||||||| |||||||||    
T  17794687 aattaaatgtaaattacattcaattttctctctctt 17794652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 202 - 320
Target Start/End: Complemental strand, 12002874 - 12002758
Alignment:
Q  202 aaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaatta 301  Q
    |||| |||| |||||||| |||||||||| || |||||||||||||| |||| |||| ||||||||| ||| |    |||||||||||||||||||||||    
T  12002874 aaatgtaagcaaaaaagacaaacttttattctatttaatcttgtttt-tttaaaaaaccatcttttccaaggattt-ttttgcttattttcatgaaatta 12002777  T
Q  302 aatgcatattatattcaat 320  Q
    |||||| |||| |||||||    
T  12002776 aatgcaaattacattcaat 12002758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 225 - 341
Target Start/End: Complemental strand, 32323481 - 32323364
Alignment:
Q  225 ttttatcctgtttaatcttg--ttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaattaaatgcatattatattcaattt 322  Q
    ||||||||| ||||||||||  |||| |||  |||| ||| ||||  |||||||||||||||||||| ||||||||||||||| | ||||  ||||||||    
T  32323481 ttttatcctatttaatcttgctttttatttttaaaaccatattttacaagaaaaacttttgcttattatcatgaaattaaatgtaaatta-cttcaattt 32323383  T
Q  323 cctctctctttcattttct 341  Q
     ||||||||| ||||||||    
T  32323382 tctctctcttccattttct 32323364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 322
Target Start/End: Original strand, 19351751 - 19351877
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtt-----tagaaaatcatcttttcgaagaaaaacttttgcttattttcatg 295  Q
    ||||| |||| |||||||| |||||||||| || ||||||||||||||        || |||||||| ||||   ||||||||||||||||||||| |||    
T  19351751 aaaatgtaagaaaaaaagacaaacttttattctatttaatcttgtttttaaaaaaataaaaaatcatttttttctagaaaaacttttgcttattttgatg 19351850  T
Q  296 aaattaaatgcatattatattcaattt 322  Q
    |||||||||||| |||| |||||||||    
T  19351851 aaattaaatgcaaattacattcaattt 19351877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 262 - 339
Target Start/End: Original strand, 20716151 - 20716228
Alignment:
Q  262 tcttttcgaagaaaaacttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||||| || ||||||||||| ||||| |||| |||||||||||| |||| ||||||||| ||| ||||||||||||    
T  20716151 tcttttccaaaaaaaacttttgtttattctcataaaattaaatgcaaattacattcaattttctcactctttcatttt 20716228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 14583717 - 14583779
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    ||||||||||| ||||||||||||||||| |||| ||||||||  | ||||||| ||||||||    
T  14583717 ttttgcttattctcatgaaattaaatgcaaattacattcaattatcactctcttccattttct 14583779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 329
Target Start/End: Complemental strand, 8683549 - 8683418
Alignment:
Q  196 gtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatg 295  Q
    ||||| ||||||||| |||||||| |||||||||| || |||||||||||||| |  | |||||||||||||| ||  |    |||| |||||| |||||    
T  8683549 gtcttgaaatataagcaaaaaagacaaacttttattctatttaatcttgtttt-taaaaaaaatcatcttttccaa-tatttttttttcttattctcatg 8683452  T
Q  296 aaattaaatgcatattatattcaatttcctctct 329  Q
    ||||||||| || |||| ||| ||||| ||||||    
T  8683451 aaattaaatacaaattacatttaattttctctct 8683418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 322
Target Start/End: Complemental strand, 21722907 - 21722787
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaatt 300  Q
    ||||| |||| |||||||| ||||||||||  |||||| ||||||||     | |||||||||||||  || ||||||||||| ||||| ||||||||||    
T  21722907 aaaatgtaagcaaaaaagacaaacttttattttgtttagtcttgtttaaaaaa-aaaatcatctttttcaaaaaaaacttttgtttattctcatgaaatt 21722809  T
Q  301 aaatgcatattatattcaattt 322  Q
    |||| || |||| ||| |||||    
T  21722808 aaatacaaattacatttaattt 21722787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 26916259 - 26916300
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcct 233  Q
    |||||||| |||||||||| ||||||||||||||||||||||    
T  26916259 ctttgtctcaaaatataagcaaaaaagataaacttttatcct 26916300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 14332748 - 14332808
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| ||||| |||| |||||||||||| |||| ||||||||| |||| |||||||||||    
T  14332748 ttttgtttattctcataaaattaaatgcaaattacattcaattttctctttctttcatttt 14332808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 17187031 - 17186975
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgtttt 248  Q
    |||||||  |||||||||| |||||||| ||||||||||||| ||||||| ||||||    
T  17187031 ctttgtcccaaaatataagcaaaaaagacaaacttttatcctatttaatcatgtttt 17186975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 28669164 - 28669104
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| ||||| |||| ||||||||| || |||| ||||||||| ||||||||||||||||    
T  28669164 ttttgtttattctcataaaattaaatacaaattacattcaattttctctctctttcatttt 28669104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 50080615 - 50080555
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    |||||||||||  |||||||||||||||| |||| ||||||||| | ||||||| ||||||    
T  50080615 ttttgcttattcgcatgaaattaaatgcaaattacattcaattttcactctcttccatttt 50080555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 56318234 - 56318174
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| ||||| |||| |||||||||| | |||| ||||||||| ||||||||||||||||    
T  56318234 ttttgtttattatcataaaattaaatgtaaattacattcaattttctctctctttcatttt 56318174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 341
Target Start/End: Original strand, 50145715 - 50145786
Alignment:
Q  270 aagaaaaacttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    ||||||||||||||  ||||||||||||||||||||   |||| ||| ||||| | ||||||| ||||||||    
T  50145715 aagaaaaacttttgtatattttcatgaaattaaatgttaattacatttaattttccctctcttccattttct 50145786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 339
Target Start/End: Original strand, 55580642 - 55580717
Alignment:
Q  264 ttttcgaagaaaaacttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| || ||||||||||| ||||| |||| |||||||||||| |||| ||| || || |||| |||||||||||    
T  55580642 ttttccaaaaaaaacttttgtttattctcataaaattaaatgcaaattacattaaaatttctctttctttcatttt 55580717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 47867873 - 47867927
Alignment:
Q  285 ttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| |||| |||||||||||| |||| ||||||||| |||| |||||||||||    
T  47867873 ttattctcataaaattaaatgcaaattacattcaattttctctttctttcatttt 47867927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 24940362 - 24940415
Alignment:
Q  288 ttttcatgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    ||||||| |||||||||| | |||| ||| ||||| ||||||||||||||||||    
T  24940362 ttttcataaaattaaatggaaattacatttaattttctctctctttcattttct 24940415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 20281579 - 20281639
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| ||||| |||| |||||||||||| |||| ||||||||| || | |||||||||||    
T  20281579 ttttgtttattctcataaaattaaatgcaaattacattcaattttctttttctttcatttt 20281639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 41414774 - 41414714
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| ||||| | || |||||||||||| |||| |||||||||  |||||||||||||||    
T  41414774 ttttgtttattcttataaaattaaatgcaaattacattcaattttttctctctttcatttt 41414714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 203 - 339
Target Start/End: Original strand, 45226053 - 45226188
Alignment:
Q  203 aatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaattaa 302  Q
    |||||||| |||||||||||||||||||||| |||||||||||||| |  | |||||| ||||||| |||||||||||||| ||||| |||| |||||||    
T  45226053 aatataagcaaaaaagataaacttttatcctatttaatcttgttttttaaaaaaaatc-tcttttccaagaaaaacttttgtttattctcataaaattaa 45226151  T
Q  303 atgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| |||| ||||||||| || |||||||||||||    
T  45226152 atgcaaattacattcaattttctatctctttcatttt 45226188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 6785361 - 6785506
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||| |||||||||||||||||||||| |||||||||||||| |  | |||||| ||||||| |||||||||||||| ||||| |    
T  6785361 ctttgtcacaaaatataagcaaaaaagataaacttttatcctatttaatcttgtttt-taaaaaaaatc-tcttttccaagaaaaacttttgtttattct 6785458  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| |||||||||||| | || ||||||||| ||||||||||||||||    
T  6785459 cataaaattaaatgcaaactacattcaattttctctctctttcatttt 6785506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 6786742 - 6786888
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||| |||||||| ||||||||||||| |||||||||||||| || | |||||| ||||||| |||||||||||||| ||||| |    
T  6786742 ctttgtcccaaaatataagcaaaaaagacaaacttttatcctctttaatcttgtttttttaaaaaaatc-tcttttccaagaaaaacttttgtttattct 6786840  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| |||||||||||| | || ||||||||| | ||||||||||||||    
T  6786841 cataaaattaaatgcaaactacattcaattttcactctctttcatttt 6786888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 192 - 339
Target Start/End: Complemental strand, 15959896 - 15959751
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||| |||||||| ||| ||||||| | |||||||||||||| |||| |||||| | ||||| |||||||||||||| ||||| |    
T  15959896 ctttgtcccaaaatataagcaaaaaagacaaatttttatcttatttaatcttgtttt-tttaaaaaatctt-ttttccaagaaaaacttttgtttattct 15959799  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| |||||||||||| |||| ||||||||| |||||||||| |||||    
T  15959798 cataaaattaaatgcaaattacattcaattttctctctctttaatttt 15959751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 28017000 - 28016865
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||| |||||||| ||||||||||||| |||||||||||||| || | |||||| ||||||| |||||||||||||| ||||| |    
T  28017000 ctttgtcccaaaatataagcaaaaaagacaaacttttatcctatttaatcttgtttt-ttaaaaaaatc-tcttttccaagaaaaacttttgtttattct 28016903  T
Q  292 catgaaattaaatgcatattatattcaatttcctctct 329  Q
    ||| ||||||||||||  ||| ||||||||| ||||||    
T  28016902 cataaaattaaatgcaagttacattcaattttctctct 28016865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 33369458 - 33369601
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    ||||||| || |||||||| |||||||| || |||||||||| |||||||||||||| |  | |||||| ||||||| |||||||||||||| ||||| |    
T  33369458 ctttgtcctagaatataagcaaaaaagacaagcttttatcctatttaatcttgtttt-taaaaaaaatc-tcttttccaagaaaaacttttgtttattct 33369555  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| |||||||||||| |||| |||||||||  |||||||||||||||    
T  33369556 cataaaattaaatgcaaattacattcaattt--tctctctttcatttt 33369601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 200 - 339
Target Start/End: Original strand, 1820328 - 1820465
Alignment:
Q  200 taaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaat 299  Q
    |||||||||||||||||||| ||||||||||||| |||||| ||||||| |||| |||||| ||||| | || ||| || |||| ||||| |||| ||||    
T  1820328 taaaatataagtaaaaaagacaaacttttatcctatttaattttgtttt-tttaaaaaatc-tctttcccaaaaaagacctttgtttattctcataaaat 1820425  T
Q  300 taaatgcatattatattcaatttcctctctctttcatttt 339  Q
    |||||||| |||| |||||||||  |||||||||||||||    
T  1820426 taaatgcaaattacattcaattttttctctctttcatttt 1820465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 192 - 339
Target Start/End: Complemental strand, 47600296 - 47600150
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  ||| ||||||||||||||| ||| ||||||||| ||||||||| ||||    | |||||| ||||||| |||||||||||||| ||||| |    
T  47600296 ctttgtccgaaagtataagtaaaaaagacaaatttttatcctatttaatcttatttttaaaaaaaaatc-tcttttccaagaaaaacttttgtttattct 47600198  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| |||||||||||| |||| ||||||||| || |||||||||||||    
T  47600197 cataaaattaaatgcaaattacattcaattttctttctctttcatttt 47600150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 192 - 339
Target Start/End: Complemental strand, 24728883 - 24728738
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||| |||||||||| |||| | ||||| |||||| || ||||||||||||||  | | |||||||||||||  || |||||||||| |||||| |    
T  24728883 ctttgtctcaaaatataagaaaaataaataaatttttattctatttaatcttgtttt--taaaaaaatcatctttttcaataaaaactttttcttattct 24728786  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    | |||||||||||||| |||| ||| ||||| |||||||||| |||||    
T  24728785 cgtgaaattaaatgcaaattacatttaattttctctctcttttatttt 24728738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 339
Target Start/End: Complemental strand, 47014739 - 47014602
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaatt 300  Q
    |||||||||| |||||| |||| |||||| ||| |||||||||||||| || | ||||  |||||||  |||||||||||||| ||||| |||| |||||    
T  47014739 aaaatataagcaaaaaatataatcttttaccctatttaatcttgtttttttaaaaaaaaaatctttttcaagaaaaacttttgtttattctcataaaatt 47014640  T
Q  301 aaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| | | || ||||||||| ||||||||||||||||    
T  47014639 aaatgta-aatacattcaattttctctctctttcatttt 47014602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 203 - 339
Target Start/End: Complemental strand, 3875268 - 3875132
Alignment:
Q  203 aatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttaga-aaatcatcttttcgaagaaaaacttttgcttattttcatgaaatta 301  Q
    |||||||| |||||||| ||| ||||||||| |||||||||||||| |||    ||||| ||||||| ||| |||||||||| ||||| |||| ||||||    
T  3875268 aatataagcaaaaaagacaaatttttatcctatttaatcttgttttttttttttaaatc-tcttttccaagtaaaacttttgtttattctcataaaatta 3875170  T
Q  302 aatgcatattatattcaatttcctctctctttcatttt 339  Q
    |||||| |||  ||||||||| ||||||||||||||||    
T  3875169 aatgcaaatttcattcaattttctctctctttcatttt 3875132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 201 - 341
Target Start/End: Original strand, 33431474 - 33431611
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaatt 300  Q
    ||||||||||||||||||| ||| |||| |||  |||||||||||||| |  | |||||||||||||| |||||||||||||| ||||| |||| ||||     
T  33431474 aaaatataagtaaaaaagacaaaattttctcccatttaatcttgtttt-taaaaaaaatcatcttttccaagaaaaacttttgtttattctcataaaatg 33431572  T
Q  301 aaatgcatattatattcaatttcctctctctttcattttct 341  Q
    |||| || |||| ||| |||||  |||||||||||||||||    
T  33431573 aaatacaaattacatttaattt--tctctctttcattttct 33431611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 50665230 - 50665313
Alignment:
Q  256 aaatcatcttttcgaagaaaaacttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||||||||||| || ||||||||||||||||| |||||||||||| |||| |||| ||| ||||| ||||||||||||||||    
T  50665230 aaatcatcttttccaataaaaacttttgcttattctcatgaaattaattgcaaattacatttaattttctctctctttcatttt 50665313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 44149088 - 44148953
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||| |||||||| |||||||||| || |||||||||||||  || | |||||||||||||| || | || ||||| |||||| |    
T  44149088 ctttgtcccaaaatataagcaaaaaagacaaacttttattctatttaatcttgttt--ttaaaaaaatcatcttttccaatagaagctttttcttattct 44148991  T
Q  292 catgaaattaaatgcatattatattcaatttcctctct 329  Q
    |||||||||||||||| ||||  || ||||| ||||||    
T  44148990 catgaaattaaatgcaaattacgtttaattttctctct 44148953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 305
Target Start/End: Original strand, 4672804 - 4672915
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||| |||||||||||| ||||||||| |||||||||||||| || | |||||| ||||||| || ||||||||||| ||||| |    
T  4672804 ctttgtcccaaaatataagcaaaaaagataaatttttatcctatttaatcttgtttt-ttaaaaaaatc-tcttttccaaaaaaaacttttgtttattct 4672901  T
Q  292 catgaaattaaatg 305  Q
    ||| ||||||||||    
T  4672902 cataaaattaaatg 4672915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 3076200 - 3076345
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||| |||||||||   ||||| | |||||||||| || |||||| |||||||  | | |||||||| ||||| || |||||||||| |||||| |    
T  3076200 ctttgtctcaaaatataatccaaaaaaacaaacttttattctatttaattttgtttt--taaaaaaatcatattttccaataaaaactttttcttattct 3076297  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    |||||||||||||||| |||| ||| ||||| ||||| |||| |||||    
T  3076298 catgaaattaaatgcaaattacatttaattttctctcacttttatttt 3076345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 50012490 - 50012641
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaa--cttttatcctgtttaatcttgttttgtttaga---aaatcatcttttcgaagaaaaacttttgctt 286  Q
    ||||||||||||||||||| |||||| | |||  ||||||| || |||||||||||||| |||      ||||| ||||||| |||||||||||||| ||    
T  50012490 ctttgtcttaaaatataagcaaaaaaaaaaaaaacttttattctatttaatcttgttttttttttttttaaatc-tcttttccaagaaaaacttttgttt 50012588  T
Q  287 attttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| | || |||||||||||| |||| ||||||||| || ||||||| |||||    
T  50012589 attcttataaaattaaatgcaaattacattcaattttctttctcttttatttt 50012641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 322
Target Start/End: Original strand, 1034761 - 1034891
Alignment:
Q  193 tttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaa-tcatcttttcgaagaaaaacttttgcttatttt 291  Q
    ||||||||||||| ||||  ||||||| ||||||||||||  |||||| || ||||    | |||| |||| ||||| |||||||||||||| ||||| |    
T  1034761 tttgtcttaaaatgtaagctaaaaagacaaacttttatccgatttaatattattttaaaaaaaaaaatcattttttccaagaaaaacttttgtttattct 1034860  T
Q  292 catgaaattaaatgcatattatattcaattt 322  Q
    |||||||||||||||  |||| |||||||||    
T  1034861 catgaaattaaatgcgaattacattcaattt 1034891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 339
Target Start/End: Complemental strand, 7468209 - 7468074
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||| |||||||| ||||||||||||| |||||||||||||| |            |||||  ||| |||||||||| ||||| |    
T  7468209 ctttgtcccaaaatataagcaaaaaagacaaacttttatcctatttaatcttgtttttt------------ctttttcaagcaaaacttttgtttattct 7468122  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| |||||||||||| |||| ||||||||| || |||||||||||||    
T  7468121 cataaaattaaatgcaaattacattcaattttctatctctttcatttt 7468074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 341
Target Start/End: Complemental strand, 23392411 - 23392275
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaatt 300  Q
    ||||| |||||||||||||  ||||| |||||| ||||||||| |||| ||||   ||| || ||||  || ||||||||||| ||||| ||||||||||    
T  23392411 aaaatgtaagtaaaaaagaccaacttctatcctatttaatcttttttttttta---aattatttttttcaaaaaaaacttttgtttattctcatgaaatt 23392315  T
Q  301 aaatgcatattatattcaatttcctctctctttcattttct 341  Q
    ||||||| |||| ||| ||||| |||| |||| ||||||||    
T  23392314 aaatgcaaattacatt-aattttctctttcttccattttct 23392275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 341
Target Start/End: Complemental strand, 39932767 - 39932681
Alignment:
Q  255 aaaatcatcttttcgaagaaaaacttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    |||| ||||||||  |||||||||||||| ||||| |||| ||||||||| || |||| ||||||||| |||||||||| |||||||    
T  39932767 aaaaccatctttttcaagaaaaacttttgtttattctcataaaattaaatacaaattacattcaattttctctctcttttattttct 39932681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 47026407 - 47026460
Alignment:
Q  200 taaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgttta 253  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||| ||||    
T  47026407 taaaatataagtaaaaaagacaaacttttatcctatttaatcttgtttttttta 47026460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 341
Target Start/End: Complemental strand, 10559012 - 10558865
Alignment:
Q  193 tttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttc 292  Q
    ||||||||||||| |||| |||||||| ||| ||||||||  |||||||||||||  |||| |||  ||||||||| ||||     |||||| |||| ||    
T  10559012 tttgtcttaaaatgtaagcaaaaaagacaaatttttatccaatttaatcttgtttc-tttaaaaagccatcttttccaagatttttttttgcatattctc 10558914  T
Q  293 atgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    ||||||||||||| | |||| ||| |||||  |||||||| ||||||||    
T  10558913 atgaaattaaatgtaaattacattaaattttttctctcttccattttct 10558865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 322
Target Start/End: Original strand, 11240961 - 11241076
Alignment:
Q  203 aatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaattaa 302  Q
    |||||||| ||||| || | ||||||||||| ||||||||||||||  |||||||||| | ||||| | |||||||||||| ||||| |||| |||||||    
T  11240961 aatataagcaaaaaggacacacttttatcctatttaatcttgtttt--ttagaaaatctt-ttttcta-gaaaaacttttgtttattctcataaaattaa 11241056  T
Q  303 atgcatattatattcaattt 322  Q
    ||| | |||| |||||||||    
T  11241057 atgtaaattacattcaattt 11241076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 32983341 - 32983281
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| ||||| |||| |||||||||||| |||||||||||||| ||||||||||||||||    
T  32983341 ttttgtttattctcataaaattaaatgcaaattatattcaattttctctctctttcatttt 32983281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 341
Target Start/End: Original strand, 46542886 - 46543034
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaa-gataaacttttatcctgtttaatcttgttttgtttagaaaatcatctttt-cgaagaaaaacttttgcttatt 289  Q
    |||||||  |||||||||| |||||| || |||||||| |||| |||||| ||||||| |  | |||||||| |||| | |||||||||||||| |||||    
T  46542886 ctttgtcccaaaatataagcaaaaaaagacaaacttttctcctatttaattttgtttt-taaaaaaaatcatttttttccaagaaaaacttttgtttatt 46542984  T
Q  290 ttcatgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
     |||| |||||||||||| |||  ||| |||||  |||||||||||||||||    
T  46542985 ctcataaaattaaatgcaaattgcatttaattt--tctctctttcattttct 46543034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 339
Target Start/End: Complemental strand, 6787238 - 6787101
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatc-ttttcgaagaaaaacttttgcttattttcatgaaat 299  Q
    |||||||||| |||||||| ||||||||||||| |||||| ||||||| || | ||||  ||| ||||| || ||||||||||  ||||| || | |||     
T  6787238 aaaatataagcaaaaaagacaaacttttatcctatttaatattgtttt-ttaaaaaaaatatctttttcaaaaaaaaacttttatttattctcgtaaaaa 6787140  T
Q  300 taaatgcatattatattcaatttcctctctctttcatttt 339  Q
    |||||||| | || ||||||||| ||||||||||||||||    
T  6787139 taaatgcaaactacattcaattt-ctctctctttcatttt 6787101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 341
Target Start/End: Complemental strand, 37735631 - 37735492
Alignment:
Q  207 taagtaaaaaagataaacttttatcctgtttaatcttgttttgttt-----agaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaatta 301  Q
    |||| ||||||||||||||| |||||| ||||||||| |||| |||     | ||||  |||||||  | ||||| |||||| |||||  ||||||||||    
T  37735631 taagcaaaaaagataaacttgtatcctatttaatctttttttttttttataaaaaaactatctttttcatgaaaagcttttgtttattcacatgaaatta 37735532  T
Q  302 aatgcatattatattcaatttcctctctctttcattttct 341  Q
    |||||| |||| ||||||||| |||||| || ||||||||    
T  37735531 aatgcaaattacattcaattttctctcttttccattttct 37735492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 32624176 - 32624116
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| ||||| |||| |||||||||||| |||| ||||||||| ||||||||||||||||    
T  32624176 ttttgtttattctcataaaattaaatgcaaattacattcaattttctctctctttcatttt 32624116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 339
Target Start/End: Complemental strand, 13136739 - 13136664
Alignment:
Q  261 atcttttcgaagaaaaacttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    |||| ||| |||||||||||||| ||||| | || |||||||||||| ||||||||||||||  |||||||||||||||    
T  13136739 atctattctaagaaaaacttttgtttattct-ataaaattaaatgcaaattatattcaattt--tctctctttcatttt 13136664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 339
Target Start/End: Complemental strand, 28120927 - 28120866
Alignment:
Q  278 cttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    |||||| |||||  ||| |||||||||||| |||| ||||||||| ||||||||||||||||    
T  28120927 cttttgtttattcacataaaattaaatgcaaattacattcaattttctctctctttcatttt 28120866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 12449138 - 12449078
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| ||||| |||| |||||||||||| |||| ||||||||| |||||||||| |||||    
T  12449138 ttttgtttattctcataaaattaaatgcaaattacattcaattttctctctctttgatttt 12449078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 307
Target Start/End: Original strand, 30221680 - 30221759
Alignment:
Q  225 ttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaattaaatgca 307  Q
    ||||||||| ||||||||| |||| ||||   |||||||||||  |||||||||| ||||||||| | || ||||||||||||    
T  30221680 ttttatcctatttaatcttatttttttta---aatcatctttttcaagaaaaactgttgcttattcttataaaattaaatgca 30221759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 39555757 - 39555697
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| ||||| |||| |||||||||||| |||| ||||||| | ||||||||||||||||    
T  39555757 ttttgtttattctcataaaattaaatgcaaattacattcaatgttctctctctttcatttt 39555697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 42965985 - 42965925
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| ||||| | || |||||||||||| |||| ||||||||| ||||||||||||||||    
T  42965985 ttttgtttattcttataaaattaaatgcaaattacattcaattttctctctctttcatttt 42965925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 52984873 - 52984921
Alignment:
Q  270 aagaaaaacttttgcttattttcatgaaattaaatgcatattatattca 318  Q
    |||||||||||||||||||| |||||||||||||| || |||| |||||    
T  52984873 aagaaaaacttttgcttattctcatgaaattaaatacaaattacattca 52984921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 231
Target Start/End: Original strand, 2125973 - 2126012
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatc 231  Q
    ||||||| |||||||||||||||||||| |||||||||||    
T  2125973 ctttgtcctaaaatataagtaaaaaagacaaacttttatc 2126012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 339
Target Start/End: Original strand, 40718669 - 40718728
Alignment:
Q  280 tttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    |||| ||||| |||| |||||||||||| |||| ||||||||| |||| |||||||||||    
T  40718669 tttgtttattctcataaaattaaatgcaaattacattcaattttctctttctttcatttt 40718728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 35691388 - 35691442
Alignment:
Q  285 ttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| |||| |||||||||||| |||| ||||||||| |||| |||||||||||    
T  35691388 ttattctcataaaattaaatgcaaattacattcaattttctctttctttcatttt 35691442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 332
Target Start/End: Complemental strand, 2246260 - 2246132
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaatt 300  Q
    ||||| |||| |||||||| |||  || ||||| ||||||||||||||   || |||| ||||||||| |||||     |||| ||||| |||| |||||    
T  2246260 aaaatgtaagcaaaaaagacaaaaattcatcctatttaatcttgtttt---taaaaaaacatcttttccaagaattttatttgtttattctcataaaatt 2246164  T
Q  301 aaatgcatattatattcaatttcctctctctt 332  Q
    ||||||| |||| ||| ||||| |||||||||    
T  2246163 aaatgcaaattacatttaattttctctctctt 2246132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 28916753 - 28916716
Alignment:
Q  193 tttgtcttaaaatataagtaaaaaagataaacttttat 230  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  28916753 tttgtctcaaaatataagtaaaaaagacaaacttttat 28916716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 2126040 - 2126088
Alignment:
Q  291 tcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    |||| |||||||||||| |||| ||||||||| |||| |||||||||||    
T  2126040 tcattaaattaaatgcaaattacattcaattttctctttctttcatttt 2126088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 43359697 - 43359741
Alignment:
Q  296 aaattaaatgcatattatattcaatttcctctctctttcattttc 340  Q
    |||||||||||| | || ||||||||| |||||||||||||||||    
T  43359697 aaattaaatgcaaagtacattcaatttgctctctctttcattttc 43359741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 192 - 339
Target Start/End: Complemental strand, 34890431 - 34890286
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||| |||||||| ||||||||||| | |||||||||||||| |||| |||||| | ||||| |||||||||||||| ||||| |    
T  34890431 ctttgtcccaaaatataagcaaaaaagacaaacttttatcttatttaatcttgtttt-tttaaaaaatctt-ttttccaagaaaaacttttgtttattct 34890334  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| |||||||||||| |||| ||||||||| ||||||||||||||||    
T  34890333 cataaaattaaatgcaaattacattcaattttctctctctttcatttt 34890286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 212 - 339
Target Start/End: Original strand, 31734037 - 31734163
Alignment:
Q  212 aaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaattaaatgcatatt 311  Q
    |||||||| ||||||||||||| |||||| ||||||| || | |||||||| ||||| |||||||||||||| ||||| |||| |||||||||||| |||    
T  31734037 aaaaaagaaaaacttttatcctatttaattttgtttttttaaaaaaatcattttttc-aagaaaaacttttgtttattctcatcaaattaaatgcaaatt 31734135  T
Q  312 atattcaatttcctctctctttcatttt 339  Q
    | ||||||||| ||||||||||||||||    
T  31734136 acattcaattttctctctctttcatttt 31734163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 201 - 339
Target Start/End: Original strand, 24892750 - 24892886
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaatt 300  Q
    |||||||||| |||||||| ||||||||||||| |||||||||||||| || | |||||| ||||| | |||||||||||||| ||||| |||| |||||    
T  24892750 aaaatataagcaaaaaagacaaacttttatcctatttaatcttgtttt-ttaaaaaaatc-tctttcccaagaaaaacttttgtttattctcataaaatt 24892847  T
Q  301 aaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||||| |||| ||||||||| || |||||||||||||    
T  24892848 aaatgcaaattacattcaattttctatctctttcatttt 24892886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 13143667 - 13143812
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||| ||||||||||||||||||||||  ||||||||||||| |  | |||||| ||||||  |||||||||||||| ||||| |    
T  13143667 ctttgtcccaaaatataagcaaaaaagataaacttttatcctaattaatcttgtttt-taaaaaaaatc-tctttttcaagaaaaacttttgtttattct 13143764  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| |||||||||||| |||| |||||||||  |||||||||||||||    
T  13143765 cataaaattaaatgcaaattacattcaattttttctctctttcatttt 13143812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 193 - 329
Target Start/End: Original strand, 2052739 - 2052874
Alignment:
Q  193 tttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttc 292  Q
    ||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| | || |||| ||||||||  || |||||   || |||||| ||    
T  2052739 tttgtctcaaaatgtaagtaaaaaagataaacttttatcctatttaatcttgtttt-tctaaaaaaccatctttttcaaaaaaaaaaatttcttattctc 2052837  T
Q  293 atgaaattaaatgcatattatattcaatttcctctct 329  Q
    ||||||||||||||| |||| ||||||||| ||||||    
T  2052838 atgaaattaaatgcaaattacattcaattttctctct 2052874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 192 - 339
Target Start/End: Complemental strand, 4047151 - 4047006
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||| |||||||| |||||||||| || ||||||||||||||  | | ||||| |||||||| |  |||||||||| |||||| |    
T  4047151 ctttgtcccaaaatataagcaaaaaagacaaacttttattctatttaatcttgtttt--taaaaaaattatcttttccagtaaaaactttttcttattct 4047054  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    |||||||||||||||| |||| ||| ||||| |||||||||| |||||    
T  4047053 catgaaattaaatgcaaattacatttaattttctctctcttttatttt 4047006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 192 - 331
Target Start/End: Complemental strand, 13144218 - 13144081
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||| |||||||||| |||||||| ||||||||||||| |||||| || ||||  | | ||||  || ||||| |||||||||||||| |||||||    
T  13144218 ctttgtctcaaaatataagcaaaaaagacaaacttttatcctatttaatattttttt--taaaaaaaatattttttccaagaaaaacttttgtttatttt 13144121  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctct 331  Q
    ||| |||||||||||| |||| ||||||||| ||||||||    
T  13144120 cataaaattaaatgcaaattacattcaattttctctctct 13144081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 193 - 339
Target Start/End: Original strand, 8711780 - 8711925
Alignment:
Q  193 tttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttc 292  Q
    ||||||| ||||||||| ||||||||| ||| |||||||||  ||||||||||||| || | |||||| ||||||| |||||||||||||| ||||| ||    
T  8711780 tttgtctcaaaatataaataaaaaagacaaatttttatcctaattaatcttgtttt-ttaaaaaaatc-tcttttccaagaaaaacttttgtttattctc 8711877  T
Q  293 at-gaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||  |||||||||||| |||| ||||||||| |||||||||| |||||    
T  8711878 ataaaaattaaatgcaaattacattcaattttctctctctttaatttt 8711925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 36190674 - 36190820
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||| |||||||| | ||||||||||| ||||||||||||||    | |||||| | ||||| |||||||||||||| ||||| |    
T  36190674 ctttgtcccaaaatataagcaaaaaagacacacttttatcctatttaatcttgtttttaaaaaaaaatc-tattttccaagaaaaacttttgtttattct 36190772  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| |||||||||||| |||| ||||||||| |||||||||| |||||    
T  36190773 cataaaattaaatgcaaattacattcaattttctctctcttttatttt 36190820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 28348515 - 28348659
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||| |||||||| ||||||||||||| |||||||||||||| |  | |||||| ||||||| || | ||||||| | ||||| |    
T  28348515 ctttgtcccaaaatataag-aaaaaagacaaacttttatcctatttaatcttgttttctaaa-aaaatc-tcttttccaatacaaactttggtttattct 28348611  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| |||||||||||| |||| ||||||||| ||||||||||||||||    
T  28348612 cataaaattaaatgcaaattacattcaattttctctctctttcatttt 28348659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 202 - 332
Target Start/End: Complemental strand, 29920518 - 29920387
Alignment:
Q  202 aaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaat-catcttttcgaagaaaaacttttgcttattttcatgaaatt 300  Q
    ||||||||| |||||| | ||||||||||||| ||||||||| |||| || | ||||| ||||||||| ||||||| |||||||||||| ||||||||||    
T  29920518 aaatataagcaaaaaacacaaacttttatcctatttaatcttatttttttaaaaaaatacatcttttccaagaaaaccttttgcttattctcatgaaatt 29920419  T
Q  301 aaatgcatattatattcaatttcctctctctt 332  Q
    |||| |  |||| ||||||||| | |||||||    
T  29920418 aaataccaattacattcaattttccctctctt 29920387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 200 - 339
Target Start/End: Complemental strand, 35456273 - 35456136
Alignment:
Q  200 taaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaat 299  Q
    |||||||||||||||||| ||||| ||||||| | |||||||||||||| |||| |||||| ||||||  ||||| |||||||| ||||| |||| ||||    
T  35456273 taaaatataagtaaaaaaaataaatttttatcttatttaatcttgtttttttta-aaaatc-tctttttcaagaagaacttttgtttattctcataaaat 35456176  T
Q  300 taaatgcatattatattcaatttcctctctctttcatttt 339  Q
    |||||| | |||| ||||| ||| |||||||||| |||||    
T  35456175 taaatgtaaattacattcatttttctctctcttttatttt 35456136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 339
Target Start/End: Original strand, 7499637 - 7499774
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaatt 300  Q
    ||||||||||||||||||| |||||| ||| || |||||||||||||| |||   ||||| ||||||| ||||||   ||||| ||||| |||| |||||    
T  7499637 aaaatataagtaaaaaagacaaacttgtattctatttaatcttgtttttttttttaaatc-tcttttccaagaaatttttttgtttattctcataaaatt 7499735  T
Q  301 aaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| | |||| ||||||||| ||||||||||||||||    
T  7499736 aaatgtaaattacattcaattttctctctctttcatttt 7499774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 192 - 301
Target Start/End: Original strand, 35525501 - 35525608
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  ||||||||||||||||||| ||||||||||||| |||||||||||||| | || |||||| ||||||| |||||||||||||| ||||| |    
T  35525501 ctttgtcccaaaatataagtaaaaaagacaaacttttatcctatttaatcttgtttt-tctaaaaaatc-tcttttccaagaaaaacttttgtttattct 35525598  T
Q  292 catgaaatta 301  Q
    ||| ||||||    
T  35525599 cataaaatta 35525608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 333
Target Start/End: Complemental strand, 34158539 - 34158409
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaatt 300  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||| || | |||||| | ||||| |||||    ||||| ||||| |||| |||||    
T  34158539 aaaatataagtaaaaaagataaacttttatcgtatttaatcttgtttt-ttaaaaaaatc-ttttttccaagaattttttttgtttattatcataaaatt 34158442  T
Q  301 aaatgcatattatattcaatttcctctctcttt 333  Q
    ||||||| |||| ||||||||| ||||||||||    
T  34158441 aaatgcaaattacattcaattttctctctcttt 34158409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 200 - 339
Target Start/End: Original strand, 41755835 - 41755974
Alignment:
Q  200 taaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaa--cttttgcttattttcatgaa 297  Q
    |||||||| || |||||||  ||| ||||||||| |||||||||||||| |||| ||| |||||||||| || ||| |  |||||| ||||| |||||||    
T  41755835 taaaatatgagcaaaaaaggcaaatttttatcctatttaatcttgtttt-ttta-aaactcatcttttctaaaaaataaccttttgtttattatcatgaa 41755932  T
Q  298 attaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    |||||||| | |||| |||||||||  |||||||||||||||    
T  41755933 attaaatgtaaattacattcaattttttctctctttcatttt 41755974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 302
Target Start/End: Complemental strand, 41809059 - 41808952
Alignment:
Q  193 tttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttc 292  Q
    ||||||| |||||||||| |||||||| |||||||||| || |||||||||||||| |  | ||||||||| |||| ||  |||||||||||||||| ||    
T  41809059 tttgtctcaaaatataagcaaaaaagacaaacttttattctatttaatcttgtttt-taaaaaaaatcatc-tttccaatgaaaacttttgcttattctc 41808962  T
Q  293 atgaaattaa 302  Q
    ||||||||||    
T  41808961 atgaaattaa 41808952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 212 - 341
Target Start/End: Complemental strand, 43216586 - 43216457
Alignment:
Q  212 aaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaattaaatgcatatt 311  Q
    |||||| | ||||||||||||| ||||||||||||||    | |||||||||||||| || ||    ||||| ||||| |||| |||||||||||| |||    
T  43216586 aaaaaaaaaaaacttttatcctatttaatcttgtttttaaaaaaaaatcatcttttccaataattgtttttgtttattctcataaaattaaatgcaaatt 43216487  T
Q  312 atattcaatttcctctctctttcattttct 341  Q
    | ||| |||||  |||||||||||||||||    
T  43216486 acatttaattttatctctctttcattttct 43216457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 340
Target Start/End: Complemental strand, 16879583 - 16879503
Alignment:
Q  259 tcatcttttcgaagaaaaacttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcattttc 340  Q
    |||||||||| ||||||| |||||| ||||| | |||||||||||| || | || ||||||||| |||||||||||||||||    
T  16879583 tcatcttttcaaagaaaa-cttttgtttattcttatgaaattaaatacaaactacattcaattttctctctctttcattttc 16879503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 338
Target Start/End: Complemental strand, 8107876 - 8107730
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaa-gataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgctt-att 289  Q
    |||||||  |||||||||| |||||| || ||| ||||||| | |||||||||||||| |||| ||||| |||||||| |||||    ||||  || |||    
T  8107876 ctttgtcccaaaatataagcaaaaaaagacaaatttttatcttatttaatcttgtttt-tttaaaaaat-atcttttccaagaatttttttttttttatt 8107779  T
Q  290 ttcatgaaattaaatgcatattatattcaatttcctctctctttcattt 338  Q
     |||| |||||||||||| |||| ||||||||| |||||||||||||||    
T  8107778 ctcataaaattaaatgcaaattacattcaattttctctctctttcattt 8107730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 8709965 - 8709906
Alignment:
Q  270 aagaaaaacttttgcttattttcatgaaattaaatgcatattatattcaatttcctctct 329  Q
    ||||||||||||| |||||| |||| |||||||||||| |||| ||||||||| ||||||    
T  8709965 aagaaaaactttttcttattctcataaaattaaatgcaaattacattcaattttctctct 8709906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 7858516 - 7858576
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| ||||| |||| |||||||||||| ||||  |||||||| ||||||||||||||||    
T  7858516 ttttgtttattctcataaaattaaatgcaaattactttcaattttctctctctttcatttt 7858576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 30576084 - 30576028
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgtttt 248  Q
    |||||||  |||||||||| |||||||| ||| ||||||||| ||||||||||||||    
T  30576084 ctttgtcccaaaatataagcaaaaaagacaaatttttatcctatttaatcttgtttt 30576028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 332
Target Start/End: Complemental strand, 33563767 - 33563634
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaact-tttgcttattt 290  Q
    |||||||  ||| |||||| ||||| |||||||||||||||| |||||| || ||        ||||| |||||||  |||||||||| ||| ||||||     
T  33563767 ctttgtcccaaattataagcaaaaatgataaacttttatcctatttaattttttt--------aaaattatctttttcaagaaaaactctttacttattc 33563676  T
Q  291 tcatgaaattaaatgcatattatattcaatttcctctctctt 332  Q
    ||||||||||||| | | |||| ||||||| |||||||||||    
T  33563675 tcatgaaattaaacgtaaattacattcaatctcctctctctt 33563634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 27819585 - 27819655
Alignment:
Q  196 gtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatctttt 267  Q
    |||||||| |||||| |||||||||||||||||||| | |||||| ||||| | || | |||||||||||||    
T  27819585 gtcttaaattataagcaaaaaagataaacttttatcatatttaattttgttat-ttcaaaaaatcatctttt 27819655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 7022569 - 7022515
Alignment:
Q  285 ttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| |||| |||||||||||| |||| ||||||||| |||| |||||||||||    
T  7022569 ttattctcataaaattaaatgcaaattacattcaattttctctttctttcatttt 7022515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 32678746 - 32678708
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttat 230  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  32678746 ctttgttttaaaatataagcaaaaaagataaacttttat 32678708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 3642129 - 3642081
Alignment:
Q  291 tcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    |||| |||| ||||||| |||| ||||||||| ||||||||||||||||    
T  3642129 tcataaaataaaatgcaaattacattcaattttctctctctttcatttt 3642081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 15824803 - 15824743
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| ||||| ||||||||||||||| | |||| ||| ||||| ||||||||| ||||||    
T  15824803 ttttgtttattctcatgaaattaaatgaaaattacattaaattttctctctcttccatttt 15824743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 331
Target Start/End: Complemental strand, 15958085 - 15958033
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctct 331  Q
    ||||| ||||| |||| |||||||||||| |||| ||||||||| ||||||||    
T  15958085 ttttgtttattctcataaaattaaatgcaaattacattcaattttctctctct 15958033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 193 - 339
Target Start/End: Complemental strand, 7275132 - 7274986
Alignment:
Q  193 tttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttc 292  Q
    |||||||||||||||||| |||||| | ||||||||||  | ||||||||||||||    | |||||||||||||| || ||||||||||||||||| ||    
T  7275132 tttgtcttaaaatataagcaaaaaatacaaacttttattatatttaatcttgtttttaaaaaaaaatcatcttttccaataaaaacttttgcttattctc 7275033  T
Q  293 atgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    |||||||||||| || |||| ||| ||||| ||||||||||||||||    
T  7275032 atgaaattaaatacaaattacatttaattttctctctctttcatttt 7274986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 9428690 - 9428756
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaa 258  Q
    |||||| | ||||||||||||||||||||||| |||||||||||||||| || |||| |||| ||||    
T  9428690 ctttgtttaaaaatataagtaaaaaagataaagttttatcctgtttaattttattttatttaaaaaa 9428756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 341
Target Start/End: Complemental strand, 17751924 - 17751853
Alignment:
Q  270 aagaaaaacttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    |||||||||||||| ||||| | |||||| |||||||| |||| |||||||||  |||||||| ||||||||    
T  17751924 aagaaaaacttttgtttattcttatgaaactaaatgcaaattacattcaattttttctctcttccattttct 17751853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 341
Target Start/End: Complemental strand, 12461606 - 12461538
Alignment:
Q  273 aaaaacttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    ||||||||||| ||||| |||||||||||||| || |||| ||||||||| || ||||||  |||||||    
T  12461606 aaaaacttttgtttattctcatgaaattaaatccaaattacattcaattttctgtctcttctattttct 12461538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 11082410 - 11082356
Alignment:
Q  285 ttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| |||| |||||||||||| |||| ||||||||| |||| |||||||||||    
T  11082410 ttattctcataaaattaaatgcaaattacattcaattttctctttctttcatttt 11082356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 30794357 - 30794301
Alignment:
Q  285 ttattttcatgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    ||||| ||||||||||||||||| |||| ||| ||||| |||||||||  |||||||    
T  30794357 ttattctcatgaaattaaatgcaaattagatttaattttctctctcttctattttct 30794301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 25944481 - 25944626
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||| |||||||| ||||||||||| | |||||||||||||| |||| |||||| | ||||| |||||||||||||| ||||| |    
T  25944481 ctttgtcccaaaatataagcaaaaaagacaaacttttatcttatttaatcttgtttt-tttaaaaaatctt-ttttccaagaaaaacttttgtttattct 25944578  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| |||||||||||| |||| ||||||||| |||||||||| |||||    
T  25944579 cataaaattaaatgcaaattacattcaattttctctctcttttatttt 25944626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 201 - 339
Target Start/End: Complemental strand, 20123926 - 20123790
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaatt 300  Q
    |||||||||  |||||||| |||| |||||||| |||||||||||||| |||| ||||||  |||| | |||||||||||||| ||||| |||| |||||    
T  20123926 aaaatataatcaaaaaagacaaacgtttatcctatttaatcttgtttt-tttaaaaaatcg-ctttcccaagaaaaacttttgtttattctcataaaatt 20123829  T
Q  301 aaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||||| |||| ||||||||| || |||||||||||||    
T  20123828 aaatgcaaattacattcaattttctttctctttcatttt 20123790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 339
Target Start/End: Complemental strand, 4910888 - 4910743
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||| |||||  | ||||||||||  | |||||||||||||| || | |||||| ||||||| |||||||| ||||| ||||  |    
T  4910888 ctttgtcccaaaatataagcaaaaagaacaaacttttattatatttaatcttgtttt-ttcaaaaaatc-tcttttccaagaaaaagttttgtttatgct 4910791  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| |||||||||||| |||| |||||||||  |||||||||||||||    
T  4910790 cataaaattaaatgcaaattacattcaattttatctctctttcatttt 4910743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 201 - 339
Target Start/End: Original strand, 9158004 - 9158140
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaatt 300  Q
    |||||||||  |||||||| |||||||||| || |||||||||||||| |  | |||||| ||||||| |||||||||||||| ||||| | || |||||    
T  9158004 aaaatataatcaaaaaagacaaacttttattctatttaatcttgtttt-taaaaaaaatc-tcttttccaagaaaaacttttgtttattcttataaaatt 9158101  T
Q  301 aaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||||| |||| |||||| ||  | |||||||||||||    
T  9158102 aaatgcaaattacattcaaatttttttctctttcatttt 9158140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 204 - 341
Target Start/End: Original strand, 15995631 - 15995771
Alignment:
Q  204 atataagtaaaaaagataaacttttatcctgtttaatcttgttttgttta---gaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaatt 300  Q
    ||||||| |||||||| ||| |||||| || |||||||||||||| || |   |||||| || || |  |||||||||||||||||||| |||| |||||    
T  15995631 atataagaaaaaaagacaaatttttattctatttaatcttgtttttttaaaaagaaaataattttcttcaagaaaaacttttgcttattctcataaaatt 15995730  T
Q  301 aaatgcatattatattcaatttcctctctctttcattttct 341  Q
    ||||||| |||| | ||||||| | ||||||| ||||||||    
T  15995731 aaatgcaaattaaaatcaattttcactctcttccattttct 15995771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 321
Target Start/End: Complemental strand, 4237957 - 4237843
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaatt 300  Q
    ||||| |||||||||| || |||||| |||||| ||||||||| |||| ||     |||||||||||| |||||||||||||| ||||| | || |||||    
T  4237957 aaaatgtaagtaaaaaggacaaacttatatcctatttaatctttttttttt-----aatcatcttttcaaagaaaaacttttg-ttattctaataaaatt 4237864  T
Q  301 aaatgcatattatattcaatt 321  Q
    ||||||| |||||||||||||    
T  4237863 aaatgcaaattatattcaatt 4237843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 200 - 339
Target Start/End: Original strand, 22632000 - 22632139
Alignment:
Q  200 taaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaat 299  Q
    ||||||||||| ||||| || |||||||||| || ||||||||| ||||    | || ||||||||||| || ||    ||||||||||| |||||||||    
T  22632000 taaaatataagcaaaaaggacaaacttttattctatttaatcttatttttaaaaaaatatcatcttttccaataattttttttgcttattctcatgaaat 22632099  T
Q  300 taaatgcatattatattcaatttcctctctctttcatttt 339  Q
    |||||||| |||| ||| ||||| ||||||||| ||||||    
T  22632100 taaatgcaaattacatttaattttctctctcttccatttt 22632139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 341
Target Start/End: Original strand, 14574545 - 14574616
Alignment:
Q  270 aagaaaaacttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    |||||||||||||||||||| |||| |||||||||||| |||| | ||||||| | ||||||| ||||||||    
T  14574545 aagaaaaacttttgcttattctcataaaattaaatgcaaattaaaatcaattttcactctcttccattttct 14574616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 341
Target Start/End: Complemental strand, 19492574 - 19492503
Alignment:
Q  270 aagaaaaacttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    ||||||||||||| ||||||  ||||||||||||| || |||||||||||||| || ||||||  |||||||    
T  19492574 aagaaaaacttttacttattcgcatgaaattaaatacaaattatattcaattttctttctcttctattttct 19492503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 341
Target Start/End: Complemental strand, 27810914 - 27810843
Alignment:
Q  270 aagaaaaacttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    ||||||||||||| | |||| ||||||||||||||||| |||| ||||||||| |  |||||| ||||||||    
T  27810914 aagaaaaacttttacatattctcatgaaattaaatgcaaattacattcaattttccatctcttccattttct 27810843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 35069081 - 35069034
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgtttt 248  Q
    |||||||||||||||| || ||||||||||||| ||||||||||||||    
T  35069081 aaaatataagtaaaaatgacaaacttttatcctatttaatcttgtttt 35069034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 282
Target Start/End: Original strand, 47778677 - 47778765
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaactttt 282  Q
    |||||||  |||||||||| |||||||| ||| |||||| || |||||||||||||  || | |||||||||||||| || ||||||||||    
T  47778677 ctttgtcccaaaatataagcaaaaaagacaaatttttattctatttaatcttgttt--ttaaaaaaatcatcttttccaataaaaactttt 47778765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 19912933 - 19912879
Alignment:
Q  285 ttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| ||||||||||||||||| |||| ||||||||| |||| |||||||||||    
T  19912933 ttattctcatgaaattaaatgcaaattacattcaattttctctttctttcatttt 19912879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 34751772 - 34751687
Alignment:
Q  212 aaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaa 298  Q
    |||||||| |||||| ||| ||||||||||||||||| |  | ||| |||| ||||| |||||||||||| || |||||||||||||    
T  34751772 aaaaaagacaaacttgtattctgtttaatcttgtttt-taaaaaaattcatattttccaagaaaaactttcgcctattttcatgaaa 34751687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 322
Target Start/End: Complemental strand, 2610747 - 2610695
Alignment:
Q  270 aagaaaaacttttgcttattttcatgaaattaaatgcatattatattcaattt 322  Q
    |||||||||||||| ||||| |||||||||||| |||| |||| |||||||||    
T  2610747 aagaaaaacttttgtttattctcatgaaattaagtgcaaattacattcaattt 2610695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 341
Target Start/End: Original strand, 11779939 - 11780070
Alignment:
Q  207 taagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaattaaatgc 306  Q
    |||| |||||| | ||| ||||| ||| ||||||||| |||| ||   |||| ||||||||  || ||||||||||| ||||| |||| |||||||||||    
T  11779939 taagcaaaaaaaacaaatttttaacctatttaatctttttttttt---aaaaccatctttttcaaaaaaaacttttgtttattctcataaaattaaatgc 11780035  T
Q  307 atattatattcaatttcctctctctttcattttct 341  Q
    | |||| ||  ||||| |||| |||| ||||||||    
T  11780036 aaattacatcaaattttctctttcttccattttct 11780070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 18102520 - 18102580
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| ||||| |||| |||||||||||| |||| ||||||||| | ||||||||||||||    
T  18102520 ttttgtttattctcataaaattaaatgcaaattacattcaattttcactctctttcatttt 18102580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 339
Target Start/End: Original strand, 47779590 - 47779654
Alignment:
Q  275 aaacttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    |||||||| |||||| ||||||||||||||||| |||| ||| ||||| |||| ||||| |||||    
T  47779590 aaactttttcttattctcatgaaattaaatgcaaattacatttaattttctctttcttttatttt 47779654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 14805866 - 14805920
Alignment:
Q  285 ttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| |||| |||||||||||| |||| ||||||||| |||| |||||||||||    
T  14805866 ttattctcataaaattaaatgcaaattacattcaattttctctttctttcatttt 14805920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 15252860 - 15252914
Alignment:
Q  285 ttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| |||| |||||||||||| |||| ||||||||| |||| |||||||||||    
T  15252860 ttattctcataaaattaaatgcaaattacattcaattttctctttctttcatttt 15252914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 25737791 - 25737737
Alignment:
Q  285 ttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| |||| |||||||||||| |||| ||||||||| |||| |||||||||||    
T  25737791 ttattctcataaaattaaatgcaaattacattcaattttctctttctttcatttt 25737737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 35923248 - 35923302
Alignment:
Q  285 ttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| |||| |||||||||||| |||| ||||||||| |||| |||||||||||    
T  35923248 ttattctcataaaattaaatgcaaattacattcaattttctctttctttcatttt 35923302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 36576338 - 36576376
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttat 230  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  36576338 ctttgtctcaaaatataagtaaaaaagacaaacttttat 36576376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 45485951 - 45486005
Alignment:
Q  285 ttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| |||| |||||||||||| |||| ||||||||| |||| |||||||||||    
T  45485951 ttattctcataaaattaaatgcaaattacattcaattttctctttctttcatttt 45486005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 329
Target Start/End: Original strand, 48413696 - 48413760
Alignment:
Q  264 ttttcgaagaaaaacttttgcttattttcatgaaattaaatgcatattatattcaatttcctctct 329  Q
    ||||| ||||||| | |||||||| | ||||||||||||||||| |||| ||||||||| ||||||    
T  48413696 ttttccaagaaaagcgtttgcttagtgtcatgaaattaaatgcaaatta-attcaattttctctct 48413760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 42045071 - 42045023
Alignment:
Q  200 taaaatataagtaaaaaagataaacttttatcctgtttaatcttgtttt 248  Q
    |||||||||| ||||||||| ||| ||||||| | ||||||||||||||    
T  42045071 taaaatataaataaaaaagacaaatttttatcttatttaatcttgtttt 42045023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 48413643 - 48413699
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgtttt 248  Q
    |||| ||| ||||| ||||||||||  ||||| |||||| |||||||||||||||||    
T  48413643 ctttatctcaaaatgtaagtaaaaagaataaatttttattctgtttaatcttgtttt 48413699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 917 - 1062
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||| |||||||| ||||||||||||| |||||||||||||| |||| |||||| ||||| | |||||||||||||| ||||| |    
T  917 ctttgtcccaaaatataagcaaaaaagacaaacttttatcctatttaatcttgtttt-tttaaaaaatc-tctttcccaagaaaaacttttgtttattct 1014  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| |||||||| ||| |||| ||| ||||| ||| ||||||||||||    
T  1015 cataaaattaaacgcaaattacattgaattttctccctctttcatttt 1062  T

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Target: scaffold0132; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 8877 - 9022
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||| |||||||| ||||||||||||| |||||||||||||| |||| |||||| ||||| | |||||||||||||| ||||| |    
T  8877 ctttgtcccaaaatataagcaaaaaagacaaacttttatcctatttaatcttgtttt-tttaaaaaatc-tctttcccaagaaaaacttttgtttattct 8974  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||| |||||||| ||| |||| ||| ||||| ||| ||||||||||||    
T  8975 cataaaattaaacgcaaattacattgaattttctccctctttcatttt 9022  T

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Target: scaffold0009 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 201 - 341
Target Start/End: Complemental strand, 52853 - 52711
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaa--tcatcttttcgaagaaaaacttttgcttattttcatgaaa 298  Q
    |||||||||| |||||| | ||||||||   || |||||||||||||| |||| ||||  | |||||||| |||||||||||||||||||||||||||||    
T  52853 aaaatataagaaaaaaaaacaaacttttgatctatttaatcttgttttttttaaaaaaaattatcttttccaagaaaaacttttgcttattttcatgaaa 52754  T
Q  299 ttaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    ||||||||  |||| ||| ||||| |||||||||  |||||||    
T  52753 ttaaatgcgaattacatttaattttctctctcttctattttct 52711  T

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Target: scaffold0009; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 157699 - 157844
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttatttt 291  Q
    |||||||  |||||||||| |||||||| |||||||||| || ||||||||||||||  | | || ||||||||||  |  |||||||||| |||||| |    
T  157699 ctttgtcccaaaatataagcaaaaaagacaaacttttattctatttaatcttgtttt--taaaaatatcatctttttcagtaaaaactttttcttattct 157796  T
Q  292 catgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    |||||||||||||||| |||| ||| ||||| |||||||||| |||||    
T  157797 catgaaattaaatgcaaattacatttaattttctctctcttttatttt 157844  T

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Target: scaffold0012 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 221 - 339
Target Start/End: Original strand, 160179 - 160300
Alignment:
Q  221 aaacttttatcctgtttaatcttgttttgtttagaaaa---tcatcttttcgaagaaaaacttttgcttattttcatgaaattaaatgcatattatattc 317  Q
    |||||||||| || |||||||||||||| |||  ||||   |||||||||| ||||||| |||||||||||| | ||||||||||||  | |||| ||||    
T  160179 aaacttttattctatttaatcttgttttttttttaaaaatatcatcttttccaagaaaaccttttgcttattcttatgaaattaaatataaattacattc 160278  T
Q  318 aatttcctctctctttcatttt 339  Q
    ||||| |||| |||| ||||||    
T  160279 aattttctctttcttccatttt 160300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 339
Target Start/End: Complemental strand, 44999 - 44882
Alignment:
Q  221 aaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaattaaatgcatattatattcaat 320  Q
    |||||||||| || |||||||||||||| |||   ||||| ||||||  |||||||||||||| ||||| || | |||||||||||| |||| ||| |||    
T  44999 aaacttttattctatttaatcttgtttttttttttaaatc-tctttttcaagaaaaacttttgtttattctcgtaaaattaaatgcaaattacatttaat 44901  T
Q  321 ttcctctctctttcatttt 339  Q
    || | ||||||||||||||    
T  44900 tttccctctctttcatttt 44882  T

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Target: scaffold1786 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold1786
Description:

Target: scaffold1786; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 201 - 312
Target Start/End: Original strand, 779 - 887
Alignment:
Q  201 aaaatataagtaaaaaagataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaatt 300  Q
    ||||| |||||||||| ||  ||||| |||||| ||||||||| |||| ||   |||||||| ||||| || ||||||||||| ||||| ||||||||||    
T  779 aaaatgtaagtaaaaatgaccaacttctatcctatttaatctttttttttt---aaaatcattttttccaaaaaaaacttttgtttattctcatgaaatt 875  T
Q  301 aaatgcatatta 312  Q
    ||||||| ||||    
T  876 aaatgcaaatta 887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 231
Target Start/End: Original strand, 154797 - 154836
Alignment:
Q  192 ctttgtcttaaaatataagtaaaaaagataaacttttatc 231  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  154797 ctttgtctcaaaatataagtaaaaaagataaacttttatc 154836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 233658 - 233596
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcattttct 341  Q
    ||||||||||| ||||||||||||||||| |||| ||||||||  | ||||||| ||||||||    
T  233658 ttttgcttattctcatgaaattaaatgcaaattacattcaattatcactctcttccattttct 233596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 10035 - 10095
Alignment:
Q  279 ttttgcttattttcatgaaattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||| ||||| ||||  ||||||||||| |||| ||||||||| ||||||||||||||||    
T  10035 ttttgtttattctcatacaattaaatgcaaattacattcaattttctctctctttcatttt 10095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0774 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0774
Description:

Target: scaffold0774; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 3581 - 3539
Alignment:
Q  297 aattaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||||||||| |||| ||||||||| ||||||||||||||||    
T  3581 aattaaatgcaaattacattcaattttctctctctttcatttt 3539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 339
Target Start/End: Original strand, 40092 - 40229
Alignment:
Q  200 taaaatataagtaaaaa-agataaacttttatcctgtttaatcttgttttgtttagaaaatcatcttttcgaagaaaaacttttgcttattttcatgaaa 298  Q
    |||||| |||| ||||| ||| ||||||||||| | |||||| || |||| |||| || | ||||| ||| ||||||||| |||  ||||| ||||||||    
T  40092 taaaatgtaagcaaaaacagacaaacttttatcatatttaattttttttt-ttta-aataccatctattccaagaaaaacctttt-ttattctcatgaaa 40188  T
Q  299 ttaaatgcatattatattcaatttcctctctctttcatttt 339  Q
    ||||||||| |||| |||||| || ||||||| | ||||||    
T  40189 ttaaatgcaaattacattcaactttctctctcatccatttt 40229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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