View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5941_low_3 (Length: 508)
Name: NF5941_low_3
Description: NF5941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5941_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 21 - 503
Target Start/End: Complemental strand, 31533866 - 31533379
Alignment:
| Q |
21 |
atgtattaatcacatctcaaaatgtaaatatctgtgaaatcattttaaaagccgacataataataaagagtcatcttcgnnnnnnn-------gttgaaa |
113 |
Q |
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| T |
31533866 |
atgtattaatcacatctcaaaatgtaaatatttgtgaaatcattttaaaagccgacataataataaagagtcatcttcttttttttttgttttgttgaaa |
31533767 |
T |
|
| Q |
114 |
gggtaataaagtgtcatctttgtataatttgattctttttaaacatctttgtataatttgatgagatgtacatgttaatttttgttttgtttgaaaaaca |
213 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31533766 |
gggtaataaagtgtgatctttgtataatttgattctttttaaacatctttgtataatttgatgagatgtacatgttaatttttgttttgtttgaaaaaca |
31533667 |
T |
|
| Q |
214 |
catgttaannnnnnnnaatagcaagcaactatcctctaccaaattttggcattaagcatctgtcacagctgaattatttgcatgattaatgtacaatact |
313 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31533666 |
catgttaattttttttaatagcaagcaactatcctctacgaaattttggcattaagcatctatcacagctgaattatttgcatgattaatgtacaatact |
31533567 |
T |
|
| Q |
314 |
tttcatgcttacgattattttaagaactatttggaatttaaataaatcaaacaaacaggtttagacgtaggaaattttatggcattcccaattaccatac |
413 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31533566 |
ttt--tgcttacgattattttaagaactatttggaatttaaataaatcaaacaaacaggtttagacgtaggaaattttatggcattcccaattaccatac |
31533469 |
T |
|
| Q |
414 |
catatatactaagaagattcttctttgatcggttcttgctgattattacaagagcagtcaatggtcggccatgttgatacctttgctact |
503 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31533468 |
catatatactaagaagattcttctttgatcggttcttgctgattattacaagagcagtcaatggtcggccatgttgatacctttgttact |
31533379 |
T |
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