View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5941_low_4 (Length: 480)
Name: NF5941_low_4
Description: NF5941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5941_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 9e-71; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 17310096 - 17310263
Alignment:
| Q |
19 |
atctggatggttgagacagtgtcagggaatgctcctgtgcattggttcgcacaggacttcgtgtgctccattgctgtgttctccctagtttttaggcttt |
118 |
Q |
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| T |
17310096 |
atctggacggttgagacggtgtcagggaatgctcctgtgcattggttcgcacaggacttcgtgtgctccatcgctgtgttctccctagtttttaggcttt |
17310195 |
T |
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| Q |
119 |
gacttaaagagctttgctttgtgggcttccagaccgtctggaacaaataaagtatatgctggtccttc |
186 |
Q |
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| T |
17310196 |
gacttaacgagctttgctttgtgggcttctagaccgtctagaacaaataacgtatatgctgctccttc |
17310263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 244 - 379
Target Start/End: Original strand, 17310321 - 17310456
Alignment:
| Q |
244 |
cataaatattttgatattatcaaggcaatgataatatgttagcgtgatcaaggcaatgcctcaagataatnnnnnnnntgtcactatcatggtactttct |
343 |
Q |
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| T |
17310321 |
cataaatattttgatattatcaaggcaatgataatatgttagcgtgatcaaggcaatgcctcaagataataaaaaaaatgtcactatcatgatactttct |
17310420 |
T |
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| Q |
344 |
ccgttgttaattataagcaaattttaactttttaag |
379 |
Q |
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| T |
17310421 |
ccgttgttaattataagcaaattttaactttttaag |
17310456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 380 - 467
Target Start/End: Original strand, 17310763 - 17310850
Alignment:
| Q |
380 |
gtcgaagggagtatcacaatatttgtttataaaagtcttgtttatagtttaacattgttcaaggagcattgatagcccacgcctacct |
467 |
Q |
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| T |
17310763 |
gtcgaagggagtatcacaatatttgtttataaaagtcttgtttatattttaacattgttcaaggagcattgatagcccacgcctacct |
17310850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 377
Target Start/End: Original strand, 12165278 - 12165320
Alignment:
| Q |
335 |
gtactttctccgttgttaattataagcaaattttaacttttta |
377 |
Q |
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| T |
12165278 |
gtactctctccgttgttaattataagcaaattttgacttttta |
12165320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 375
Target Start/End: Original strand, 1741882 - 1741915
Alignment:
| Q |
342 |
ctccgttgttaattataagcaaattttaactttt |
375 |
Q |
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| T |
1741882 |
ctccgttgttaattataagcaaattttgactttt |
1741915 |
T |
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