View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5941_low_7 (Length: 276)

Name: NF5941_low_7

Description: NF5941

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF5941_low_7

[»] chr2 (2 HSPs)

Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 2)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 163; E-Value: 4e-87

Query Start/End: Original strand, 1 - 167

Target Start/End: Complemental strand, 40467297 - 40467131

Alignment:

Q	1	aacaagatagggtttcacgagctcatcacatacagtacgttccaaagtgtgtgacaaaagtttcaagactagctatgggtggatcacgagtgcaataaga	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	40467297	aacaagatagggtttcacgagctcatcacatacagtacgttccaaagtgtgtgacaaaagtttcaagactagctatgggtggatcacgagtgcaataaga	40467198	T

Q	101	gaataagtttcaaaactattttttaaaagagcaaaatatactagaatataagtttcaatccaaattg	167	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	40467197	gaataagtttcaaaactattttttaaaagagcaaaatatactagaatataagtttcaatcctaattg	40467131	T

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Target: chr2; HSP #2

Raw Score: 43; E-Value: 0.000000000000002

Query Start/End: Original strand, 207 - 253

Target Start/End: Complemental strand, 40467072 - 40467026

Alignment:

Q	207	gttattaacattttgccaaaacttgaaagtattgagtatataaatca	253	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	40467072	gttattaccattttgccaaaacttgaaagtattgagtatataaatca	40467026	T

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