View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5942-Insertion-1 (Length: 980)
Name: NF5942-Insertion-1
Description: NF5942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5942-Insertion-1 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 611; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 247 - 980
Target Start/End: Complemental strand, 649374 - 648646
Alignment:
| Q |
247 |
ttcataaagagataaattttgggatgtacttgaacagaataagacagaagtagatttatcttnnnnnnntcatacctccccagatgcatagatgctatag |
346 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
649374 |
ttcataaagagataaattttgggatg--cttgaacagaataagacagaagtagatttatcttaaaaaaatcatacctccccagatgcatagatgctatag |
649277 |
T |
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| Q |
347 |
gtcccccatatccaaacattccaaaacaaggctacacatcacaatcaatacaacaaagcaaaccataattttaaaatttctgtttataagcatcacaaac |
446 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
649276 |
gtcccccatatccaaacattccaaaacaaggctgcacatcacaatcaatacaacaaagcaaaccataattttaaaatttctgtttataagcatcacaaac |
649177 |
T |
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| Q |
447 |
agcaatgtgttactagaagtttagataaaggaaatacttccagtcaccaagatatgatttatgcaggtatgctcgtctagcttaaaatgcttatcctatt |
546 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
649176 |
agcaatgtgttactagaagtttagataaaggaaatacttccagtcaccaagatatgatttatgcaggtatgctcttctagcttaaaatgcttatcctatt |
649077 |
T |
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| Q |
547 |
tgagcacgttacaacaaacgtgttcaacnnnnnnnnnnnnntattttttaatgaaggtaagctattatagcttcaaatacttctattaggcatgttacaa |
646 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
649076 |
tgagcacgttacaacaaacgtgttcaacaaaaataaaaaaatattttttaatgaaggtaagctattatagcttcaaatacttctattaggcatgttacaa |
648977 |
T |
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| Q |
647 |
caagcatgttcaacgataattgaagggtgaaaaggcacgaaaatgaagaataccattaagtatggcggttttcctccaatagcctgtgattttgattgtc |
746 |
Q |
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| T |
648976 |
caagcatgttcaacgataattgaagggtgaacaggcacgaaaatgaagaataccattaagtatggcggttttcctccaatagcctgtgattttgattgtc |
648877 |
T |
|
| Q |
747 |
ggtgaaggggaagcacccatctttcccctgcacaagagataagaagtccagaatcaagagaagccagtggaatatgcaaacagacaaatcataaaaggca |
846 |
Q |
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| T |
648876 |
ggtgaa-gggaagcacccatctttcccctgcacaagagataagaagtccagaatcaagagaagccagtggaatatgcaaacagacaaatcataaaaggca |
648778 |
T |
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| Q |
847 |
tggtgcaattagattgaaagtcactgaaagtgtgagtgtgatttaatattttaaaatttaaaagtctgggtgtgtttaagacaaatcttcatttattcag |
946 |
Q |
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| T |
648777 |
tggtgcaattagattgaaagtcactgaaagtgtgagtgtgatttaatattttaaaatttaaaagtct-ggtgtgtttaagacaaatcttcatttattcag |
648679 |
T |
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| Q |
947 |
agccaaaagctagcaaatgttaaatactgggtgt |
980 |
Q |
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| T |
648678 |
a-acaaaagctagcaatgtttaaatactgggtgt |
648646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 649615 - 649398
Alignment:
| Q |
8 |
acatgatactgctagttgagaatattaaaataagacctaaagnnnnnnncaatagcaattgcattgataaggatacatgaataccttccatgtgccttca |
107 |
Q |
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| T |
649615 |
acatgatactgctagttgagaatattaaaataagacctaaagaaaaaaacaatagccattgcattgataaggaaacatgaataccttccatgtgccttca |
649516 |
T |
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| Q |
108 |
gtgttagatttattatttaacaaagcttctctgtgaagccataactcgtagacattctttacatgctttgtcttggaagaaacacgggtatacctgtaaa |
207 |
Q |
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| T |
649515 |
gagttagatttattatttaacaaagcttctctgtgaagccataactcgtagacattctttacatgctttgtcttggaagaaacacgggtatacctgtaaa |
649416 |
T |
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| Q |
208 |
atgataatagcaaaaata |
225 |
Q |
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| T |
649415 |
atgataatagcaaaaata |
649398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 686 - 913
Target Start/End: Complemental strand, 686334 - 686109
Alignment:
| Q |
686 |
aaaatgaagaataccattaagtatggcggttttcctccaatagcctgtgattttgattgtcggtgaaggggaagcacccatctttcccctgcacaagaga |
785 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||| | | || ||||| ||||||||| |||||||| |
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| T |
686334 |
aaaatgaagaataccattaagtatgggggttttcccccaatagcctgtgattttgataatcggtgaagtg-acgctcccatttttcccctgaacaagaga |
686236 |
T |
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| Q |
786 |
taagaagtccagaatcaagagaagccagtggaatatgcaaacagacaaatcataaaaggcatggtgcaattagattgaaagtcactgaaagtgtgagtgt |
885 |
Q |
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||| ||||||| |||||||||| | |||| ||||||||||||||| ||| ||||||||| ||| | ||| |||||||||||||||||||||||||||||| |
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| T |
686235 |
taaaaagtccataatcaagagacggcagttgaatatgcaaacagataaaccataaaaggtatgatacaactagattgaaagtcactgaaagtgtgagtgt |
686136 |
T |
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| Q |
886 |
gatttaatattttaaaatttaaaagtct |
913 |
Q |
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| T |
686135 |
ga-ttaatattttaaaatttaaaagtct |
686109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 430 - 568
Target Start/End: Original strand, 238951 - 239089
Alignment:
| Q |
430 |
ttataagcatcacaaacagcaatgtgttactagaagtttagataaaggaaatacttccagtcaccaagatatgatttatgcaggtatgctcgtctagctt |
529 |
Q |
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|||||||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||| |||||||| |
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| T |
238951 |
ttataagcatcacacacaacaatgtgttactataagtttagataaaggaaatatttccagttaccaagatatgatttatgcagggatgctcttctagctt |
239050 |
T |
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| Q |
530 |
aaaatgcttatcctatttgagcacgttacaacaaacgtg |
568 |
Q |
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||| ||||||||||||||||||| ||||||||||||||| |
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| T |
239051 |
aaattgcttatcctatttgagcatgttacaacaaacgtg |
239089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 26 - 216
Target Start/End: Original strand, 238708 - 238897
Alignment:
| Q |
26 |
agaatattaaaataagac--ctaaagnnnnnnncaatagcaattgcattgataaggatacatgaataccttccatgtgccttcagtgttagatttattat |
123 |
Q |
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| T |
238708 |
agaatattaaaataagacacctaaagaaaaaagcaatagccattgcattgataaggaaacatgaatacattccatgtggcttcagagttagatttatg-- |
238805 |
T |
|
| Q |
124 |
ttaacaaagcttctctgtgaagccataactcgtagacattctttacatgctttgtcttggaagaaacacgggtatacctgtaaaatgataata |
216 |
Q |
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||| ||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
238806 |
-taagaaagcttctctctgaagaaataactcgtagactttctttacatgctttgtcttggaagaaacacgggtacacctttaaaatgataata |
238897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 317 - 422
Target Start/End: Complemental strand, 686558 - 686453
Alignment:
| Q |
317 |
catacctccccagatgcatagatgctataggtcccccatatccaaacattccaaaacaaggctacacatcacaatcaatacaacaaagcaaaccataatt |
416 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||| |||||| |||| ||||| ||| ||| |||||||||| ||||| |
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| T |
686558 |
catacctccccaaatgcatagatgctataggtccaccatatccatacattccaaaataaggctgcacagcacaaccaacacagcaaagcaaacaataatc |
686459 |
T |
|
| Q |
417 |
ttaaaa |
422 |
Q |
| |
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|||||| |
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| T |
686458 |
ttaaaa |
686453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 191
Target Start/End: Complemental strand, 686786 - 686663
Alignment:
| Q |
65 |
attgcattgataaggatacatgaataccttccatgtgccttcagtgttagatttattatttaacaaagcttctctgtgaagccataactcgtagacattc |
164 |
Q |
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||||||||| ||| | |||||||||||||||||||| |||||| ||| ||| | || |||||||||||||| ||||| |||| |||||| ||| |
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| T |
686786 |
attgcattgttaaaggaacatgaataccttccatgtggcttcagagttggatcttttc---aacaaagcttctctctgaagaagtaacatgtagactttc |
686690 |
T |
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| Q |
165 |
tttacatgctttgtcttggaagaaaca |
191 |
Q |
| |
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|||||||| ||||||||||| |||||| |
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| T |
686689 |
tttacatgttttgtcttggacgaaaca |
686663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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