View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5942-Insertion-4 (Length: 905)
Name: NF5942-Insertion-4
Description: NF5942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5942-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 9 - 268
Target Start/End: Complemental strand, 35912777 - 35912509
Alignment:
| Q |
9 |
ctttgccttcatcttcttgcaatagagtttcacacacaacaagattcaaaaggtttctctttagctagatgtattgtgtatttcactctttcacttactc |
108 |
Q |
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| T |
35912777 |
ctttgccttcatcttcttggaatagagtttcacacacaacaagattcaaaaggtttctctttagctagatgtattgtgtatttcactctttcacttactc |
35912678 |
T |
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| Q |
109 |
attacttatatagacttgttagtgctgtccttgagattgtaaagtttgtatttatcttcttgaat---attaaatagatgaaactatgttaaaattgaca |
205 |
Q |
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| T |
35912677 |
attacttatatagacttgttagtgctgtccttgagattgtaaagtttgtatttatcttcttgaatattattaaatagatgaaactatgttaaaattgaca |
35912578 |
T |
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| Q |
206 |
aatattaaagaaaaataaaatatagttta------tgtttgtgtctcaattaaatatgttgtcgtgaac |
268 |
Q |
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| T |
35912577 |
aatattaaagaaaaataaaatatagtttatgtttgtgtttgtgtctcaattaaatatgttgtcgtgaac |
35912509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 333 - 571
Target Start/End: Complemental strand, 35912444 - 35912197
Alignment:
| Q |
333 |
aagttatatccaaccttattagtatcatttacatggagtgcttgtttctctttgtttgatattgacccctaaccttacaccacgcataaatccatttatc |
432 |
Q |
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| T |
35912444 |
aagttatatccaaccttattagtatcatttacatggagtgcttgtttctctttgtttgatattgacccctaaccttacaccacgcataaatccatttatc |
35912345 |
T |
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| Q |
433 |
cttag---ttttattaaagaaaacggtctttattttgtttcttagttcaaaatggaaaaatccgcactactagaaaatttgcattaagatatactc---- |
525 |
Q |
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| T |
35912344 |
cttagtttttttattaaagaaaacggtctttattttgtttcttagttcaaaatggaaaaatccgcactactagaaaatttgcattaagatatactctatt |
35912245 |
T |
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| Q |
526 |
--tatttttattttgaatgacaggtattctatttgataataacatgta |
571 |
Q |
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| T |
35912244 |
tttatttttattttgaatgacaggtattctatttgataataacatgta |
35912197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 623 - 765
Target Start/End: Complemental strand, 35912145 - 35912002
Alignment:
| Q |
623 |
atgaagccaggaagtaaattaaaaagaaaaagtactaaattgaagggattacgctaaaactcaattaaacaagtaacaactgat-aacaaaagagaagta |
721 |
Q |
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| T |
35912145 |
atgaagccaggaagtaaattaaaaagaaaaagtactaaattgaagggattaagctaaaactcaattaaacaagtaacaactgataaaaaaaagagaagta |
35912046 |
T |
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| Q |
722 |
cccttgttagctcagaaattaaagaagcgactcacacgagttac |
765 |
Q |
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| T |
35912045 |
cccttgttagctcagaaattaaagaagcgactcacacgagttac |
35912002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 853 - 905
Target Start/End: Complemental strand, 35911913 - 35911861
Alignment:
| Q |
853 |
aaaacaatttaaactttaaaaatttacaaattagtactcctataaacatgata |
905 |
Q |
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| T |
35911913 |
aaaacaatttaaactttaaaaatttacaaattagtactcctataaacatgata |
35911861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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