View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5942_high_1 (Length: 555)
Name: NF5942_high_1
Description: NF5942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5942_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 9 - 540
Target Start/End: Complemental strand, 10914322 - 10913791
Alignment:
| Q |
9 |
agcataggagactgagggaagagaatagggcagagagaagggacgctttgttgacgacccttttaaacaaactcattcatgaatctaactaaatgagtca |
108 |
Q |
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| T |
10914322 |
agcataggagactgagggaagagaatagggcagagagaagggacgctttgttgacgacccttttaaacaaactcattcatgaatctaactaaatgagtca |
10914223 |
T |
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| Q |
109 |
aatggcttgggttcttcacagctgatttatttgttgtttcaatttaaatatatgattttaagtttgacaaagagaatgaactaaattttatagtagcttt |
208 |
Q |
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| T |
10914222 |
aatggcttgggttcttcacagctgatttatttgttgtttcaatttaaatatatgattttaagtttgacaaagagaatgaactaaattttatagtagcttt |
10914123 |
T |
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| Q |
209 |
tgattacagagaattttggaaaggagtatttggtgaatgaagaaaggagataggaaaggatttgaatactataggagtacatgaatattttcttttgaaa |
308 |
Q |
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| T |
10914122 |
tgattacagagaattttggaaaggagtatttggtgaatgaagaaaggagataggaaaggatttgaatactataggagtacatgaatattttcttttgaaa |
10914023 |
T |
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| Q |
309 |
gttgatacaggaaaagctttttgtattgattatttagggatacacgtcttgggcatcaaccagggatatattggttgtaaaacacattgtttctgtatga |
408 |
Q |
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| T |
10914022 |
gttgatacaggaaaagctttttgtattgattatttagggatacacgtcttgggcatcaaccagggatatattggttgtaaaacacattgtttctgtatga |
10913923 |
T |
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| Q |
409 |
ttctctttacataccttacatattacctctgcactttttatgtattgcatggtgggatgaaacttttttatttattttacattcatgccattctctataa |
508 |
Q |
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| T |
10913922 |
ttctctttacataccttacatattacctctgcactttttatgtattgcatggggggttgaaacctttttatttattttacattcatgccattctctataa |
10913823 |
T |
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| Q |
509 |
atttgataagactcaaggctaaggaactttgt |
540 |
Q |
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| T |
10913822 |
atttgataagactcaaggctaaggaactttgt |
10913791 |
T |
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