View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5942_high_2 (Length: 440)
Name: NF5942_high_2
Description: NF5942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5942_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 9853962 - 9853541
Alignment:
| Q |
1 |
ttaaattcaattcctatatcctttacgcacccaaagtgatatttttgctcacattgaacgcaaacaagaatattgttatccttgtgatctttacattctt |
100 |
Q |
| |
|
|||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9853962 |
ttaaattcaattcctacagcctttacgcatccaaagtgatatttttgctcacattgaacacaaacaagaatattgttatccttgtgatctttacattctt |
9853863 |
T |
|
| Q |
101 |
gtttgcatttgggtcgataacatattttgcaacaacaagttggacagaaccattcaccaatcggaactcgattgagacctaaacaaccgaggtggaatgc |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9853862 |
gtttgcatttgggtcgatagcatattttgcaacaacaagttggacagaaccattcaccaattggaactcgattgagacctaaacaaccgaggtggaatgc |
9853763 |
T |
|
| Q |
201 |
agaaggacatcgatcacatagtgctaagtcacctccaaaaccacaaatagaacaaacattatcattctttgcttcagaattttctttgacaacacaatga |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9853762 |
agaagggcatcgatcacatagtgctaagtcacctccaaaaccacaaatagaacaaacattatcattctttgcttcagaattttctttgacaacacaatga |
9853663 |
T |
|
| Q |
301 |
ttcttctttcggttttctttgacaatagaatgattcttcttttgattttcgttgacaacagaataattccctttatgatcactcgaactcagagcttccc |
400 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9853662 |
ttcttctttcgattttctttgacaatggaatgattcttcttttgattttcgttgacaacagaatgattccctttatgatcactcgaactcagagcttccc |
9853563 |
T |
|
| Q |
401 |
tttgacaatccaacaacgatct |
422 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
9853562 |
tttgacaatccaacaacgatct |
9853541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 9820018 - 9820439
Alignment:
| Q |
1 |
ttaaattcaattcctatatcctttacgcacccaaagtgatatttttgctcacattgaacgcaaacaagaatattgttatccttgtgatctttacattctt |
100 |
Q |
| |
|
|||||||||||||||| | ||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9820018 |
ttaaattcaattcctacagcctttacacatccaaagtgatatttttgctcacattgaacacaaacaagaatattgttatccttgtgatctttacattctt |
9820117 |
T |
|
| Q |
101 |
gtttgcatttgggtcgataacatattttgcaacaacaagttggacagaaccattcaccaatcggaactcgattgagacctaaacaaccgaggtggaatgc |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9820118 |
gtttgcatttgggtcgatagcatattttgcaacaacaagttggacagaaccattcaccaattggaactcgattgagacctaaacaacctaggtggaatgc |
9820217 |
T |
|
| Q |
201 |
agaaggacatcgatcacatagtgctaagtcacctccaaaaccacaaatagaacaaacattatcattctttgcttcagaattttctttgacaacacaatga |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
9820218 |
agaagggcatcgatcacatagtgctaagtcacctccaaaaccacaaatagaacaaacattatcattatttgcttcagatttttctttgacaacacaatga |
9820317 |
T |
|
| Q |
301 |
ttcttctttcggttttctttgacaatagaatgattcttcttttgattttcgttgacaacagaataattccctttatgatcactcgaactcagagcttccc |
400 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9820318 |
ttcttctttcgattttctttgacaatagaatgattcttcttttgattttcgttgacaacagaatgattccctttatgatcactcgaactcagagcttccc |
9820417 |
T |
|
| Q |
401 |
tttgacaatccaacaacgatct |
422 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
9820418 |
tttgacaatccaacaacgatct |
9820439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 47528878 - 47528596
Alignment:
| Q |
20 |
cctttacgcacccaaagtgatatttttgctcacattgaacgcaaacaagaatattgttatccttgtgatctttacattcttgtttgcatttgggtcgata |
119 |
Q |
| |
|
||||||| |||||||||||| |||| |||||||||||||| |||||||||||||||||||| ||| |||| ||||||||||||| ||||| |||||| | |
|
|
| T |
47528878 |
cctttacacacccaaagtgaaatttctgctcacattgaacacaaacaagaatattgttatcattggtatctgtacattcttgtttacatttaggtcgaca |
47528779 |
T |
|
| Q |
120 |
acatattttgcaacaacaagttggacagaaccattcaccaatcggaactcgattgagacctaaacaaccgaggtggaatgcagaaggacatcgatcacat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
47528778 |
acatattttgcaacaacaagttggacagaaccaatcaccatccggaactcgatcaagatctaaacaactgaggtggaatgcagaaggacatcgatcacat |
47528679 |
T |
|
| Q |
220 |
agtgctaagtcacctccaaaaccacaaatagaacaaacattatcattctttgcttcagaattttctttgacaacacaatgatt |
302 |
Q |
| |
|
||| ||| ||||| ||||||||||||||||||||||||| ||||||| ||||||||| | ||| ||| | ||| ||||||||| |
|
|
| T |
47528678 |
agtactatgtcacgtccaaaaccacaaatagaacaaacagtatcattatttgcttcatagtttgcttcggcaatacaatgatt |
47528596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 20 - 303
Target Start/End: Complemental strand, 47523530 - 47523247
Alignment:
| Q |
20 |
cctttacgcacccaaagtgatatttttgctcacattgaacgcaaacaagaatattgttatccttgtgatctttacattcttgtttgcatttgggtcgata |
119 |
Q |
| |
|
||||||| |||||||| ||| | ||||| |||||||||| ||||||||||||||| | || ||| |||| ||||||||| ||||||||||||||||| |
|
|
| T |
47523530 |
cctttacacacccaaaatgaaacttttgtgcacattgaacacaaacaagaatattgctgtcattgccatctgcacattcttgcttgcatttgggtcgata |
47523431 |
T |
|
| Q |
120 |
acatattttgcaacaacaagttggacagaaccattcaccaatcggaactcgattgagacctaaacaaccgaggtggaatgcagaaggacatcgatcacat |
219 |
Q |
| |
|
||||||||||||||||| |||||||||||||| || ||| ||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
47523430 |
gcatattttgcaacaacatgttggacagaaccaatcgccatccggaactcgatcgagacctaaacaactgaggtggaatgcagaaggacattgatcacac |
47523331 |
T |
|
| Q |
220 |
agtgctaagtcacctccaaaaccacaaatagaacaaacattatcattctttgcttcagaattttctttgacaacacaatgattc |
303 |
Q |
| |
|
||| ||| ||||||||| ||| ||||||||||||||||| |||| || ||||||||| ||||| ||||| ||||||| |||||| |
|
|
| T |
47523330 |
agtactatgtcacctcccaaatcacaaatagaacaaacagtatcgttatttgcttcataatttgctttggcaacacagtgattc |
47523247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 28 - 254
Target Start/End: Complemental strand, 47550588 - 47550362
Alignment:
| Q |
28 |
cacccaaagtgatatttttgctcacattgaacgcaaacaagaatattgttatccttgtgatctttacattcttgtttgcatttgggtcgataacatattt |
127 |
Q |
| |
|
|||||||||||| ||||| | ||||||||||| ||| ||||||||| | ||| | | || | | |||||||||||||||||||| || |||||||| |
|
|
| T |
47550588 |
cacccaaagtgaaattttcgttcacattgaacacaagcaagaatatcatcatcaatatcatttgcaaattcttgtttgcatttgggttgacaacatattc |
47550489 |
T |
|
| Q |
128 |
tgcaacaacaagttggacagaaccattcaccaatcggaactcgattgagacctaaacaaccgaggtggaatgcagaaggacatcgatcacatagtgctaa |
227 |
Q |
| |
|
| ||||| ||| | ||||| ||||| |||| |||| |||||||| ||||||||||| | |||||| | ||||||||||| |||||||| | ||| |
|
|
| T |
47550488 |
tacaacagcaactcggacataaccacataccatccggatctcgattgggacctaaacaatcagagtggaacgaagaaggacatccatcacataatattaa |
47550389 |
T |
|
| Q |
228 |
gtcacctccaaaaccacaaatagaaca |
254 |
Q |
| |
|
|||||||||||||||||||| |||||| |
|
|
| T |
47550388 |
gtcacctccaaaaccacaaacagaaca |
47550362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 21 - 282
Target Start/End: Original strand, 44870921 - 44871182
Alignment:
| Q |
21 |
ctttacgcacccaaagtgatatttttgctcacattgaacgcaaacaagaatattgttatccttgtgatctttacattcttgtttgcatttgggtcgataa |
120 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||| || || ||||||| |||||| || ||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
44870921 |
ctttacacacccaaagtgaaatttttgctcacattgtacacatacaagaaaattgttttcattgccatctgcacattcttgtttgcatttgggtcgatag |
44871020 |
T |
|
| Q |
121 |
catattttgcaacaacaagttggacagaaccattcaccaatcggaactcgattgagacctaaacaaccgaggtggaatgcagaaggacatcgatcacata |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44871021 |
catattttgcaacaacaagttggacagaaccaatcaccatctggaactcgatcaagacctaaacaaccaaggtggaatgcagaaggacatcgatcacata |
44871120 |
T |
|
| Q |
221 |
gtgctaagtcacctccaaaaccacaaatagaacaaacattatcattctttgcttcagaattt |
282 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||||| || || ||||||||||||||| |
|
|
| T |
44871121 |
gtactaagtcacctccaaagccacaaatagaacaaacattgtcgttatttgcttcagaattt |
44871182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 28 - 303
Target Start/End: Complemental strand, 21062203 - 21061931
Alignment:
| Q |
28 |
cacccaaagtgatatttttgctcacattgaacgcaaacaagaatattgttatccttgtgatctttacattcttgtttgcatttgggtcgataacatattt |
127 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||| || |||||||||||||||| || || | ||| ||||||||||| || ||| |||||||||||| |
|
|
| T |
21062203 |
cacccaaattgaaatttttgctcacattgaacacacgcaagaatattgttatcattaccatttgcacactcttgtttgcactttggttgataacatattt |
21062104 |
T |
|
| Q |
128 |
tgcaacaacaagttggacagaaccattcaccaatcggaactcgattgagacctaaacaaccgaggtggaatgcagaaggacatcgatcacatagtgctaa |
227 |
Q |
| |
|
|||| | ||||||||||| ||| | |||| | | ||||| || |||||||||| ||| | |||||||||||||||||||||||||||||| | | |
|
|
| T |
21062103 |
tgcagccacaagttggacgaaactaatcactatccaaaactccatcgagacctaaagaacagcggtggaatgcagaaggacatcgatcacataatattgt |
21062004 |
T |
|
| Q |
228 |
gtcacctccaaaaccacaaatagaacaaacattatcattctttgcttcagaattttctttgacaacacaatgattc |
303 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||| ||| ||| | | ||||||| || |||||||||||||||| |
|
|
| T |
21062003 |
gtcacccccaaaaccacaaatagaacaaa---tataattattttcattagaatttgctacgacaacacaatgattc |
21061931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 28 - 303
Target Start/End: Complemental strand, 21081596 - 21081324
Alignment:
| Q |
28 |
cacccaaagtgatatttttgctcacattgaacgcaaacaagaatattgttatccttgtgatctttacattcttgtttgcatttgggtcgataacatattt |
127 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||| || |||||||||||||||| || || | ||| ||||||||||| || ||| |||||||||||| |
|
|
| T |
21081596 |
cacccaaattgaaatttttgctcacattgaacacacgcaagaatattgttatcattaccatttgcacactcttgtttgcactttggttgataacatattt |
21081497 |
T |
|
| Q |
128 |
tgcaacaacaagttggacagaaccattcaccaatcggaactcgattgagacctaaacaaccgaggtggaatgcagaaggacatcgatcacatagtgctaa |
227 |
Q |
| |
|
|||| | ||||||||||| ||| | |||| | | ||||| || |||||||||| ||| | |||||||||||||||||||||||||||||| | | |
|
|
| T |
21081496 |
tgcagccacaagttggacgaaactaatcactatccaaaactccatcgagacctaaagaacagcggtggaatgcagaaggacatcgatcacataatattgt |
21081397 |
T |
|
| Q |
228 |
gtcacctccaaaaccacaaatagaacaaacattatcattctttgcttcagaattttctttgacaacacaatgattc |
303 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||| ||| ||| | | ||||||| || |||||||||||||||| |
|
|
| T |
21081396 |
gtcacccccaaaaccacaaatagaacaaa---tataattattttcattagaatttgctacgacaacacaatgattc |
21081324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 93 - 259
Target Start/End: Original strand, 21080746 - 21080912
Alignment:
| Q |
93 |
acattcttgtttgcatttgggtcgataacatattttgcaacaacaagttggacagaaccattcaccaatcggaactcgattgagacctaaacaaccgagg |
192 |
Q |
| |
|
||||||| |||| ||||| |||||||| |||||||||||||||||| || || ||||||| |||||| | ||||||||||||||||||||||||| || |
|
|
| T |
21080746 |
acattctggttttcatttaggtcgatagcatattttgcaacaacaaattcgaaagaaccaatcaccatccagaactcgattgagacctaaacaaccatgg |
21080845 |
T |
|
| Q |
193 |
tggaatgcagaaggacatcgatcacatagtgctaagtcacctccaaaaccacaaatagaacaaacat |
259 |
Q |
| |
|
| |||| |||| |||| | |||||| ||| ||| ||||| ||||||||| |||||| |||||||| |
|
|
| T |
21080846 |
tttaatgaagaaagacaccaatcacaaagtactatgtcacaaccaaaaccaaaaataggacaaacat |
21080912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 93 - 259
Target Start/End: Original strand, 21061353 - 21061519
Alignment:
| Q |
93 |
acattcttgtttgcatttgggtcgataacatattttgcaacaacaagttggacagaaccattcaccaatcggaactcgattgagacctaaacaaccgagg |
192 |
Q |
| |
|
||||||| |||| ||||| |||||||| |||||||||||||||||| || || ||||||| || ||| | ||||||||||||||||||||||||| || |
|
|
| T |
21061353 |
acattctggttttcatttaggtcgatagcatattttgcaacaacaaattcgaaagaaccaatccccatccagaactcgattgagacctaaacaaccatgg |
21061452 |
T |
|
| Q |
193 |
tggaatgcagaaggacatcgatcacatagtgctaagtcacctccaaaaccacaaatagaacaaacat |
259 |
Q |
| |
|
| |||| |||| |||| | |||||| ||| ||| ||||| ||||||||| |||||| |||||||| |
|
|
| T |
21061453 |
tttaatgaagaaagacaccaatcacaaagtactatgtcacaaccaaaaccaaaaataggacaaacat |
21061519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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