View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5942_high_6 (Length: 251)
Name: NF5942_high_6
Description: NF5942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5942_high_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 35912178 - 35912427
Alignment:
| Q |
11 |
cacagatgcaaacaaaaaatacatgttattatcaaatagaatacctgtcattcaaaa------taaaaatagagtatatcttaatgcaaattttctagta |
104 |
Q |
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| T |
35912178 |
cacaaatgcaaacaaaaaatacatgttattatcaaatagaatacctgtcattcaaaataaaaataaaaatagagtatatcttaatgcaaattttctagta |
35912277 |
T |
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| Q |
105 |
gtgcggatttttccattttgaactaagaaacaaaataaagaccgttttctttaat---aaaactaaggataaatggatttatgcgtggtgtaaggttagg |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35912278 |
gtgcggatttttccattttgaactaagaaacaaaataaagaccgttttctttaataaaaaaactaaggataaatggatttatgcgtggtgtaaggttagg |
35912377 |
T |
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| Q |
202 |
ggtcaatatcaaacaaagagaaacaagcactccatgtaaatgatactaat |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35912378 |
ggtcaatatcaaacaaagagaaacaagcactccatgtaaatgatactaat |
35912427 |
T |
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