View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5942_low_5 (Length: 379)
Name: NF5942_low_5
Description: NF5942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5942_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 102 - 361
Target Start/End: Original strand, 35912509 - 35912777
Alignment:
| Q |
102 |
gttcacgacaacatatttaattgagacacaaaca------taaactatattttatttttctttaatatttgtcaattttaacatagtttcatctatttaa |
195 |
Q |
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| T |
35912509 |
gttcacgacaacatatttaattgagacacaaacacaaacataaactatattttatttttctttaatatttgtcaattttaacatagtttcatctatttaa |
35912608 |
T |
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| Q |
196 |
t---attcaagaagataaatacaaactttacaatctcaaggacagcactaacaagtctatataagtaatgagtaagtgaaagagtgaaatacacaataca |
292 |
Q |
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| T |
35912609 |
taatattcaagaagataaatacaaactttacaatctcaaggacagcactaacaagtctatataagtaatgagtaagtgaaagagtgaaatacacaataca |
35912708 |
T |
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| Q |
293 |
tctagctaaagagaaaccttttgaatcttgttgtgtgtgaaactctattgcaagaagatgaaggcaaag |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35912709 |
tctagctaaagagaaaccttttgaatcttgttgtgtgtgaaactctattccaagaagatgaaggcaaag |
35912777 |
T |
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