View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5942_low_6 (Length: 374)
Name: NF5942_low_6
Description: NF5942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5942_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 42220401 - 42220741
Alignment:
| Q |
1 |
attgtgttgacaaggtcgcgcggaagcaattttcttggaaaaatcaacccacacatgcgcgcgcacacatatataacacttgttttaacactcacgcaag |
100 |
Q |
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|||||||||||||||| | | ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42220401 |
attgtgttgacaaggtggtgtggaagagattttcttggtaaaatcaacccacacatgcgcgcgcacacatatataacacttgttttaacactcacgcaag |
42220500 |
T |
|
| Q |
101 |
acacgggaaagatttataatttataataaaaaggtttaaatgaacttcnnnnnnnnnnnattttgaaacaggttatgtctttaactcgtgatttgtgtgg |
200 |
Q |
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|||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| | ||| |
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| T |
42220501 |
acacagaaaagatttataatttataataaaaaggtttaaatgaacttc----tttttttattttgaaacaggttatgtctttaacttgtga----tatgg |
42220592 |
T |
|
| Q |
201 |
tagaaaaatggccacaaataccacagtgaaaacatttgtatgacggaataacagtcataaattcaaatttatatttcctacataatatttgtggtannnn |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42220593 |
cggaaaaatggccacaaataccacagtgaaaacatttgtatgacggaataacagtcataaattcaaatttatatttcctac---atatttgtggtatttt |
42220689 |
T |
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| Q |
301 |
nnnactgccacatatcaatatgggtgccacaaattatttttctacttgtgag |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42220690 |
tttactgccacatatcaatatgggtgccacaaattatttttctatttgtgag |
42220741 |
T |
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