View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5943_high_1 (Length: 476)
Name: NF5943_high_1
Description: NF5943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5943_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 12 - 461
Target Start/End: Complemental strand, 50055428 - 50054979
Alignment:
| Q |
12 |
atgaacttgttgagggagataatatgatggagattggaaaagaatcttcatttgagttgaattttgattatgatgattctcatgaaacatgtgaagaggt |
111 |
Q |
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| T |
50055428 |
atgaagttgttgagggagataatatgatggagattggaaaagaatcttcatttgagttgaattttgattatgatgattctcatgaaacatgtgaagaggt |
50055329 |
T |
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| Q |
112 |
gaaggagaagtgtggagaacaaaatgaaaataatgattataataaggggaaaagaaaaatatctttgcagctagattatgatgcagtaatcattgcatgg |
211 |
Q |
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| T |
50055328 |
gaaggagaagtgtggagaacaaaatgaaaataatgattataataaggggaaaagaaaaatatctttgcagctagattatgatgcagtaatcattgcatgg |
50055229 |
T |
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| Q |
212 |
gatagccaaaagtgtccctggactaatggtgacaagccaattttggatgctgatgagaactggcctgattgcatggtataatttatatcttaatttcttc |
311 |
Q |
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| T |
50055228 |
gatagccagaagtgtccctggactaatggtgacaagccaattttggatgctgatgagaactggcccgattgcatggtataatttatatcttaatttcttc |
50055129 |
T |
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| Q |
312 |
atggcttatttactatttataatccctttagttaatgattggtatcacaatcaatttatcaacatcttgttcaccctgattttttacacactcatggtga |
411 |
Q |
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| T |
50055128 |
atggcttatttactatttataatccctttagttaatgattggtatcacaatcaatatatcaacatcttgttcaccctgattttttacacactcatggtga |
50055029 |
T |
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| Q |
412 |
taccaaatatacatttagttacttcaattttcttatatatgtatattaat |
461 |
Q |
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| T |
50055028 |
taccaaatatacatttagttacttcaattttcttatatatgtatattaat |
50054979 |
T |
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