View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5943_high_6 (Length: 246)
Name: NF5943_high_6
Description: NF5943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5943_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 47315444 - 47315679
Alignment:
| Q |
1 |
caaatacaatgtttggctttagagttgagaagttgctagcatgtattttattgcgtcaactaagtgatgttagttgagctctaatgttccttgtttggcc |
100 |
Q |
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| T |
47315444 |
caaatacaatgtttggctttagagttgagaagttgctagcatgtattttattgcgtcaactaagtgatgttagttgagctctaatgttccttgtttggcc |
47315543 |
T |
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| Q |
101 |
atatataatgttaagcttgaaagttgagaacttgctagcatgtattttctttaatgtcagataagtactgttaattgagctctactgttccttgtttggc |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
47315544 |
atatataatgttaatcttgaaagttgagaacttgctagcatgtattttctttaatgtcagataagtactgttaactgagctctactgttccttgtttggc |
47315643 |
T |
|
| Q |
201 |
tttcagcgtcgctgcaagcattcaccggaacctatg |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
47315644 |
tttcagcgtcgctgcaagcattcaccggaacctatg |
47315679 |
T |
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