View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5943_low_3 (Length: 475)

Name: NF5943_low_3
Description: NF5943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5943_low_3
NF5943_low_3
[»] chr2 (10 HSPs)
chr2 (111-352)||(28317780-28318035)
chr2 (18-114)||(28318448-28318544)
chr2 (267-337)||(45086011-45086081)
chr2 (267-321)||(23407775-23407829)
chr2 (268-337)||(24477503-24477572)
chr2 (409-469)||(28317659-28317717)
chr2 (267-335)||(22605963-22606031)
chr2 (267-337)||(10213861-10213931)
chr2 (276-327)||(40074065-40074116)
chr2 (256-322)||(11616689-11616755)
[»] chr5 (6 HSPs)
chr5 (267-333)||(36978754-36978820)
chr5 (256-321)||(29242123-29242188)
chr5 (265-321)||(9609526-9609582)
chr5 (267-337)||(39860969-39861039)
chr5 (243-308)||(4052914-4052979)
chr5 (256-337)||(30796813-30796894)
[»] chr7 (16 HSPs)
chr7 (243-324)||(2405227-2405308)
chr7 (245-337)||(5866260-5866352)
chr7 (245-337)||(23362332-23362424)
chr7 (245-298)||(12152767-12152820)
chr7 (256-337)||(25611378-25611459)
chr7 (267-336)||(40187403-40187472)
chr7 (256-336)||(6596190-6596270)
chr7 (249-337)||(9360785-9360873)
chr7 (267-337)||(4595056-4595126)
chr7 (256-337)||(3962309-3962390)
chr7 (268-337)||(9026607-9026676)
chr7 (265-337)||(30466711-30466783)
chr7 (267-322)||(42852023-42852078)
chr7 (256-337)||(14160507-14160588)
chr7 (249-301)||(8150863-8150915)
chr7 (245-337)||(35827610-35827702)
[»] chr1 (3 HSPs)
chr1 (256-337)||(48522207-48522288)
chr1 (245-307)||(26347415-26347477)
chr1 (243-308)||(25070828-25070893)
[»] chr8 (8 HSPs)
chr8 (245-325)||(14219800-14219880)
chr8 (256-337)||(11503084-11503165)
chr8 (256-337)||(25663548-25663629)
chr8 (256-322)||(32578109-32578175)
chr8 (267-324)||(10342418-10342478)
chr8 (267-321)||(32282869-32282923)
chr8 (267-329)||(36531187-36531249)
chr8 (256-300)||(31037715-31037759)
[»] chr4 (11 HSPs)
chr4 (253-336)||(25058316-25058399)
chr4 (267-333)||(22359267-22359333)
chr4 (268-337)||(17423849-17423918)
chr4 (256-337)||(26429207-26429288)
chr4 (256-337)||(35853202-35853283)
chr4 (245-322)||(48446704-48446781)
chr4 (267-324)||(12274236-12274293)
chr4 (267-322)||(9034943-9034998)
chr4 (267-322)||(26006111-26006166)
chr4 (240-323)||(28031561-28031644)
chr4 (256-322)||(2536994-2537060)
[»] chr6 (6 HSPs)
chr6 (256-337)||(32957481-32957562)
chr6 (267-337)||(7435642-7435712)
chr6 (267-337)||(7597603-7597673)
chr6 (249-327)||(13406171-13406249)
chr6 (267-337)||(34183147-34183217)
chr6 (245-322)||(7608536-7608613)
[»] chr3 (9 HSPs)
chr3 (243-312)||(7622703-7622772)
chr3 (245-333)||(43018359-43018447)
chr3 (267-322)||(51951994-51952049)
chr3 (249-337)||(21689780-21689868)
chr3 (267-322)||(8457955-8458010)
chr3 (267-334)||(39383498-39383565)
chr3 (267-329)||(26400227-26400289)
chr3 (265-322)||(39133716-39133773)
chr3 (268-337)||(55218673-55218742)
[»] scaffold0360 (1 HSPs)
scaffold0360 (268-322)||(5339-5393)
[»] scaffold0279 (1 HSPs)
scaffold0279 (256-322)||(6771-6837)
[»] scaffold0016 (1 HSPs)
scaffold0016 (256-322)||(187184-187250)
[»] scaffold0004 (1 HSPs)
scaffold0004 (267-337)||(216505-216575)
[»] scaffold0201 (1 HSPs)
scaffold0201 (256-307)||(20703-20754)
[»] scaffold0450 (1 HSPs)
scaffold0450 (267-321)||(5350-5404)
[»] scaffold0011 (1 HSPs)
scaffold0011 (267-323)||(58457-58513)


Alignment Details
Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 111 - 352
Target Start/End: Complemental strand, 28318035 - 28317780
Alignment:
Q  111 aaaatgtgcttaaaagatttaaaaactttcttatataagacacatatttaaggacgaa-------------accaaatattgggtcacgctccctcaaac 197  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||              |||||| || |||||||||||| ||||||    
T  28318035 aaaatgtgcttaaaagatttaaaaactttcttatataagacatatatttaaggacgaggctaagaaggtggaccaaacat-gggtcacgctccatcaaac 28317937  T
Q  198 attttttaatttttgtatattagtaccnnnnnnnnnnnnn--acaggaaaaatttattatattttatttaaaataatagtagagatataagatggaatct 295  Q
    |||||  |||||||||||| ||||||                ||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||    
T  28317936 attttaaaatttttgtatactagtacgtttatttatttttttacaggaaaaatttattgcattttatttaaaataatagtagagatataagatgaaatct 28317837  T
Q  296 taatataaatatgaaaaatatcatgacacgaaaccactctagtatgtattattacaa 352  Q
    ||||||||||||||||| ||||||||||| |||||||| | ||||||||||||||||    
T  28317836 taatataaatatgaaaattatcatgacacaaaaccactttggtatgtattattacaa 28317780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 28318544 - 28318448
Alignment:
Q  18 atttgtcactacattatcctatctggtcnnnnnnnaagttgacaagttatcctatctgtcattagaaaatccgtaacaattttattggcttcgaaaa 114  Q
    ||||||||||||||||||||||||||||        ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28318544 atttgtcactacattatcctatctggtcttttttttagttgacaagttatcctatctgtcagtagaaaatccgtaacaattttattggcttcgaaaa 28318448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 337
Target Start/End: Original strand, 45086011 - 45086081
Alignment:
Q  267 aataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactctag 337  Q
    |||||||||||||||||||||||||||| |||||| |||||| ||| || |||||| |||| |||||||||    
T  45086011 aataatagtagagatataagatggaatcctaatatgaatatggaaactagcatgacgcgaagccactctag 45086081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 23407775 - 23407829
Alignment:
Q  267 aataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatga 321  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||| || |||||    
T  23407775 aataatagtagagatataagatggaatcttaatatgaatatggaaactagcatga 23407829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 337
Target Start/End: Original strand, 24477503 - 24477572
Alignment:
Q  268 ataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactctag 337  Q
    ||||||||||||||||||||||||||| |||||| |||||||||| || ||| || | || |||||||||    
T  24477503 ataatagtagagatataagatggaatcctaatatgaatatgaaaactagcataacgcaaagccactctag 24477572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 409 - 469
Target Start/End: Complemental strand, 28317717 - 28317659
Alignment:
Q  409 attcaatgtgcccttaagttttagtcttaccaatatgtaatgtaacactctcatctctgct 469  Q
    |||||||| |||||||||||  |||||||||||||||||||| || |||||||||||||||    
T  28317717 attcaatgcgcccttaagtt--agtcttaccaatatgtaatgcaatactctcatctctgct 28317659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 335
Target Start/End: Complemental strand, 22606031 - 22605963
Alignment:
Q  267 aataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactct 335  Q
    |||||| ||||||||| ||||||||||| |||||| |||||||||| || |||||| | ||||||||||    
T  22606031 aataattgtagagatacaagatggaatcctaatatgaatatgaaaactagcatgacgcaaaaccactct 22605963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 337
Target Start/End: Complemental strand, 10213931 - 10213861
Alignment:
Q  267 aataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactctag 337  Q
    |||||||||||||||| |||||| ||||||||||| |||||| ||| || |||||| |||| |||| ||||    
T  10213931 aataatagtagagatacaagatgaaatcttaatatgaatatggaaactagcatgacgcgaagccaccctag 10213861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 327
Target Start/End: Original strand, 40074065 - 40074116
Alignment:
Q  276 agagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaa 327  Q
    ||||||| |||||||||||||||||| |||||||||| || |||||| ||||    
T  40074065 agagatacaagatggaatcttaatatgaatatgaaaactagcatgacgcgaa 40074116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 322
Target Start/End: Complemental strand, 11616755 - 11616689
Alignment:
Q  256 attttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgac 322  Q
    |||| ||| |||||||||||||||||| ||||| ||||| |||||| |||||| ||| || ||||||    
T  11616755 atttcattcaaaataatagtagagatacaagatagaatcctaatatgaatatggaaactagcatgac 11616689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 267 - 333
Target Start/End: Complemental strand, 36978820 - 36978754
Alignment:
Q  267 aataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccact 333  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||| || |||||| ||||||||||    
T  36978820 aataatagtagagatacaagatggaatcctaatataaatatgaaaactagcatgacgcgaaaccact 36978754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 256 - 321
Target Start/End: Original strand, 29242123 - 29242188
Alignment:
Q  256 attttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatga 321  Q
    |||| ||| |||||||||||||||||| || |||||||| ||||||||||||| ||| || |||||    
T  29242123 atttcattcaaaataatagtagagatacaatatggaatcctaatataaatatggaaactagcatga 29242188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 321
Target Start/End: Original strand, 9609526 - 9609582
Alignment:
Q  265 aaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatga 321  Q
    |||||||||||||||||| ||||||||||| |||||| |||||| ||| || |||||    
T  9609526 aaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatga 9609582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 337
Target Start/End: Complemental strand, 39861039 - 39860969
Alignment:
Q  267 aataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactctag 337  Q
    |||||||||||||||| ||||| ||||| |||||| |||||| ||| || |||||| |||| |||| ||||    
T  39861039 aataatagtagagatacaagattgaatcataatatgaatatggaaactagcatgacgcgaagccaccctag 39860969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 4052979 - 4052914
Alignment:
Q  243 aaaaatttattatattttatttaaaataatagtagagatataagatggaatcttaatataaatatg 308  Q
    |||||||||||  |||| ||| | |||||| ||||||||||||||||||||| ||| || ||||||    
T  4052979 aaaaatttattgcatttcattcataataatggtagagatataagatggaatcctaaaatgaatatg 4052914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 337
Target Start/End: Original strand, 30796813 - 30796894
Alignment:
Q  256 attttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactctag 337  Q
    |||| ||| |||||||||||||||||  ||||||||||| |||||| |||||| ||| || || ||| | || |||||||||    
T  30796813 atttcattcaaaataatagtagagatgcaagatggaatcctaatatgaatatggaaactagcaagacgcaaagccactctag 30796894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 243 - 324
Target Start/End: Complemental strand, 2405308 - 2405227
Alignment:
Q  243 aaaaatttattatattttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacac 324  Q
    ||||| ||||| ||||| ||||| |||||||  ||||||||||||||||||||||||||||||| ||||| || ||||||||    
T  2405308 aaaaacttattgtatttcatttataataatatgagagatataagatggaatcttaatataaatacgaaaactagcatgacac 2405227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 245 - 337
Target Start/End: Complemental strand, 5866352 - 5866260
Alignment:
Q  245 aaatttattatattttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactctag 337  Q
    |||||||||  |||| ||| | |||||||||||||||| |||||| |||| |||||| |||||| ||| || ||||||||||| |||||||||    
T  5866352 aaatttattgcatttcattcataataatagtagagatacaagatgaaatcctaatatgaatatggaaattaacatgacacgaagccactctag 5866260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 245 - 337
Target Start/End: Complemental strand, 23362424 - 23362332
Alignment:
Q  245 aaatttattatattttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactctag 337  Q
    |||||||||  |||| ||| |||||||||||||||||| ||||||||||| |||||| |||||| ||| || |||||| | || |||||||||    
T  23362424 aaatttattgcatttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagccactctag 23362332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 12152820 - 12152767
Alignment:
Q  245 aaatttattatattttatttaaaataatagtagagatataagatggaatcttaa 298  Q
    |||||||||  |||| |||||||||||||||||||||||| |||||||||||||    
T  12152820 aaatttattgcatttcatttaaaataatagtagagatatacgatggaatcttaa 12152767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 337
Target Start/End: Original strand, 25611378 - 25611459
Alignment:
Q  256 attttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactctag 337  Q
    |||| ||| |||||||||||||||||| ||||||||||| |||||| |||||| ||| || |||||| | || |||||||||    
T  25611378 atttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagccactctag 25611459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 267 - 336
Target Start/End: Complemental strand, 40187472 - 40187403
Alignment:
Q  267 aataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactcta 336  Q
    |||||||||||||||| ||||||||||| |||||| |||||||||| || || ||| | |||||||||||    
T  40187472 aataatagtagagatacaagatggaatcctaatatgaatatgaaaactagcaagacgcaaaaccactcta 40187403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 6596270 - 6596190
Alignment:
Q  256 attttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactcta 336  Q
    |||| ||| |||||||||||||| ||| ||||||||||| |||||| |||||| ||| || |||||| | |||||||||||    
T  6596270 atttcattcaaaataatagtagatatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaaaccactcta 6596190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 337
Target Start/End: Complemental strand, 9360873 - 9360785
Alignment:
Q  249 ttattatattttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactctag 337  Q
    ||||| ||||| ||| | |||||||||||||||| ||||||||||| |||||| |||||| ||| || |||||| | |||| |||||||    
T  9360873 ttattgtatttcattcataataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaaactactctag 9360785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 337
Target Start/End: Original strand, 4595056 - 4595126
Alignment:
Q  267 aataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactctag 337  Q
    |||||||||||||||| |||||| |||| |||||| |||||| ||| || |||||||  ||||||||||||    
T  4595056 aataatagtagagatacaagatgaaatcctaatatgaatatggaaactagcatgacagaaaaccactctag 4595126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 256 - 337
Target Start/End: Original strand, 3962309 - 3962390
Alignment:
Q  256 attttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactctag 337  Q
    |||| ||| |||||||||||||||||| ||||||||||| |||||  |||||| ||| || |||||| | || |||||||||    
T  3962309 atttcattcaaaataatagtagagatacaagatggaatcctaatacgaatatggaaactagcatgacgcaaagccactctag 3962390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 268 - 337
Target Start/End: Complemental strand, 9026676 - 9026607
Alignment:
Q  268 ataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactctag 337  Q
    |||||| |||||||| |||||||||||||||||| |||||| ||| || |||||| | || |||||||||    
T  9026676 ataataatagagatacaagatggaatcttaatatgaatatggaaattagcatgacgcaaatccactctag 9026607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 337
Target Start/End: Complemental strand, 30466783 - 30466711
Alignment:
Q  265 aaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactctag 337  Q
    |||||||||||||||||| ||||||||||| |||||| |||||| ||| || ||| || | || |||||||||    
T  30466783 aaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcataacgcaaagccactctag 30466711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 42852078 - 42852023
Alignment:
Q  267 aataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgac 322  Q
    ||||||| |||||||||||||||||||| |||||| |||||| ||| || ||||||    
T  42852078 aataataatagagatataagatggaatcctaatatgaatatggaaactaacatgac 42852023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 337
Target Start/End: Complemental strand, 14160588 - 14160507
Alignment:
Q  256 attttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactctag 337  Q
    |||| ||| |||||||||||||||||| |||| |||||| |||||| |||| | ||| || |||||| | || |||||||||    
T  14160588 atttcattcaaaataatagtagagatacaagaaggaatcctaatatgaatacgcaaactagcatgacgcaaagccactctag 14160507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 8150863 - 8150915
Alignment:
Q  249 ttattatattttatttaaaataatagtagagatataagatggaatcttaatat 301  Q
    |||||| |||| ||| | |||||||||||||||| ||||||||||| ||||||    
T  8150863 ttattacatttcattcataataatagtagagatacaagatggaatcctaatat 8150915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 337
Target Start/End: Complemental strand, 35827702 - 35827610
Alignment:
Q  245 aaatttattatattttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactctag 337  Q
    |||||||||  |||||||||| ||||  |  ||||||| |||||| ||||||||||| |||||| ||| || ||||||| ||| ||| |||||    
T  35827702 aaatttattgcattttatttataatataaagagagatacaagatgaaatcttaatatgaatatggaaattagcatgacatgaatccattctag 35827610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 256 - 337
Target Start/End: Complemental strand, 48522288 - 48522207
Alignment:
Q  256 attttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactctag 337  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||| |||||| ||| || |||||| | || |||||||||    
T  48522288 atttcatttataataatagtagagatataagatggaatcttaatatgaatatggaaactagcatgacgcaaagccactctag 48522207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 26347477 - 26347415
Alignment:
Q  245 aaatttattatattttatttaaaataatagtagagatataagatggaatcttaatataaatat 307  Q
    ||||||||| ||||||||| | |||||||||||||||| ||||||||||| ||||||||||||    
T  26347477 aaatttattttattttattcataataatagtagagatacaagatggaatcataatataaatat 26347415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 25070828 - 25070893
Alignment:
Q  243 aaaaatttattatattttatttaaaataatagtagagatataagatggaatcttaatataaatatg 308  Q
    |||||||||||  |||| ||| | |||||| ||||||||||||||||||||| ||| || ||||||    
T  25070828 aaaaatttattgcatttcattcataataatggtagagatataagatggaatcctaaaatgaatatg 25070893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 245 - 325
Target Start/End: Original strand, 14219800 - 14219880
Alignment:
Q  245 aaatttattatattttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacg 325  Q
    ||||||||| ||||| |||||||||||||||||| || |||| || ||||||||||| |||||| ||| || |||||||||    
T  14219800 aaatttattgtatttcatttaaaataatagtagaaatgtaagctgaaatcttaatatgaatatggaaactaacatgacacg 14219880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 337
Target Start/End: Original strand, 11503084 - 11503165
Alignment:
Q  256 attttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactctag 337  Q
    |||| ||| |||||||||||||||||| ||||||||||| |||||| |||||| ||| || |||||| | || |||||||||    
T  11503084 atttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagccactctag 11503165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 337
Target Start/End: Complemental strand, 25663629 - 25663548
Alignment:
Q  256 attttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactctag 337  Q
    |||| ||| |||||||||| ||||||| ||||||||||| |||||| |||||| |||||| |||||| | || |||||||||    
T  25663629 atttcattcaaaataataggagagatacaagatggaatcctaatatgaatatggaaaatagcatgacgcaaatccactctag 25663548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 322
Target Start/End: Complemental strand, 32578175 - 32578109
Alignment:
Q  256 attttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgac 322  Q
    |||| ||| |||||||||||||||||| ||||||||||| |||||| |||||| ||| || ||||||    
T  32578175 atttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgac 32578109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 324
Target Start/End: Complemental strand, 10342478 - 10342418
Alignment:
Q  267 aataatagtagagatataagatggaatc---ttaatataaatatgaaaaatatcatgacac 324  Q
    ||||||||||||||||||||||||||||    |||||| |||||||||| || ||||||||    
T  10342478 aataatagtagagatataagatggaatcctaataatatgaatatgaaaactagcatgacac 10342418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 32282869 - 32282923
Alignment:
Q  267 aataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatga 321  Q
    |||||||||||||||| ||||||||||| |||||| |||||| ||| || |||||    
T  32282869 aataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatga 32282923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 36531249 - 36531187
Alignment:
Q  267 aataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaac 329  Q
    |||||||||||||| | ||||||||||| |||||| |||||| ||| || |||||||| ||||    
T  36531249 aataatagtagagaaacaagatggaatcctaatatgaatatggaaattagcatgacacaaaac 36531187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 31037715 - 31037759
Alignment:
Q  256 attttatttaaaataatagtagagatataagatggaatcttaata 300  Q
    |||| ||| |||||||||||||||||| |||||||||| ||||||    
T  31037715 atttcattcaaaataatagtagagatacaagatggaattttaata 31037759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 336
Target Start/End: Original strand, 25058316 - 25058399
Alignment:
Q  253 tatattttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactcta 336  Q
    ||||||||||| | |||||||||||||||| ||||| |||||||||||| |||||| ||| || |||||| |||| ||| ||||    
T  25058316 tatattttattcataataatagtagagatacaagattgaatcttaatatgaatatggaaactaacatgacgcgaagccagtcta 25058399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 267 - 333
Target Start/End: Original strand, 22359267 - 22359333
Alignment:
Q  267 aataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccact 333  Q
    |||||||||||||||| |||||||||||||||||| |||||| ||| || |||||||| || |||||    
T  22359267 aataatagtagagatacaagatggaatcttaatatgaatatggaaactagcatgacacaaagccact 22359333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 337
Target Start/End: Original strand, 17423849 - 17423918
Alignment:
Q  268 ataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactctag 337  Q
    ||||||||||||||| ||||||||||| |||||| |||||| ||| || |||||| |||| |||||||||    
T  17423849 ataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgactcgaagccactctag 17423918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 337
Target Start/End: Original strand, 26429207 - 26429288
Alignment:
Q  256 attttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactctag 337  Q
    |||| ||| |||||||||||||||||| ||||||||||| |||||| |||||| ||| || |||||| | || |||||||||    
T  26429207 atttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagccactctag 26429288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 337
Target Start/End: Complemental strand, 35853283 - 35853202
Alignment:
Q  256 attttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactctag 337  Q
    |||| ||| |||||||||||||||||| ||||||||||| |||||| |||||| ||| || |||||| | || |||||||||    
T  35853283 atttaattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagccactctag 35853202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 322
Target Start/End: Complemental strand, 48446781 - 48446704
Alignment:
Q  245 aaatttattatattttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgac 322  Q
    ||||||||| ||||| ||| | |||||||||||||||||||||||||| | |||||| |||||| ||| || ||||||    
T  48446781 aaatttattgtatttcattcataataatagtagagatataagatggaaccataatatgaatatggaaactagcatgac 48446704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 267 - 324
Target Start/End: Complemental strand, 12274293 - 12274236
Alignment:
Q  267 aataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacac 324  Q
    |||||||||||||||| ||||||||||| ||||||||||||  ||| || ||||||||    
T  12274293 aataatagtagagatacaagatggaatcctaatataaatatagaaactaacatgacac 12274236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 9034998 - 9034943
Alignment:
Q  267 aataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgac 322  Q
    |||||||||||||||| ||||||||||| |||||| |||||| ||| || ||||||    
T  9034998 aataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgac 9034943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 26006111 - 26006166
Alignment:
Q  267 aataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgac 322  Q
    |||||||||||||||| ||||||||||| |||||| |||||| ||| || ||||||    
T  26006111 aataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgac 26006166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 323
Target Start/End: Complemental strand, 28031644 - 28031561
Alignment:
Q  240 aggaaaaatttattatattttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgaca 323  Q
    |||||||| ||| || |||||||||||||||| |||||||||| |||||| ||| | |||  ||||| ||||| || |||||||    
T  28031644 aggaaaaacttaatacattttatttaaaataaaagtagagatacaagatgaaatttgaatgaaaatacgaaaactagcatgaca 28031561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 322
Target Start/End: Original strand, 2536994 - 2537060
Alignment:
Q  256 attttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgac 322  Q
    |||||||| | |||||||||||||||| ||||||||||| ||| || |||||| ||| || ||||||    
T  2536994 attttattcataataatagtagagatacaagatggaatcctaacatgaatatggaaactagcatgac 2537060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 337
Target Start/End: Complemental strand, 32957562 - 32957481
Alignment:
Q  256 attttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactctag 337  Q
    |||| ||| |||||||||||||||||| ||||||||||| |||||| |||||| ||| || |||||| | || |||||||||    
T  32957562 atttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagccactctag 32957481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 337
Target Start/End: Original strand, 7435642 - 7435712
Alignment:
Q  267 aataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactctag 337  Q
    |||||||||||||||| ||||||||||| |||||| |||||| ||| || |||||| | || |||||||||    
T  7435642 aataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagccactctag 7435712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 337
Target Start/End: Complemental strand, 7597673 - 7597603
Alignment:
Q  267 aataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactctag 337  Q
    ||||| |||||||||||||||||||||| |||||| |||||||||| || ||| || | || |||||||||    
T  7597673 aataagagtagagatataagatggaatcctaatatgaatatgaaaactagcatcacgcaaagccactctag 7597603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 13406249 - 13406171
Alignment:
Q  249 ttattatattttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaa 327  Q
    ||||| ||||| ||||||||||| |||||||||| | ||| |||||||||||| | |||| ||| || |||||| ||||    
T  13406249 ttattgtatttcatttaaaataagagtagagatacacgatcgaatcttaatatgattatggaaactagcatgactcgaa 13406171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 337
Target Start/End: Original strand, 34183147 - 34183217
Alignment:
Q  267 aataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactctag 337  Q
    |||| ||||||||||| |||||| ||||  |||||||||||||||| || |||||| | || |||||||||    
T  34183147 aatagtagtagagatacaagatgaaatcccaatataaatatgaaaactaacatgacgcaaagccactctag 34183217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 322
Target Start/End: Complemental strand, 7608613 - 7608536
Alignment:
Q  245 aaatttattatattttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgac 322  Q
    |||||||||  |||| ||| | |||||||||||||||| ||||||||||  |||||| |||||| ||| || ||||||    
T  7608613 aaatttattgcatttcattcataataatagtagagatacaagatggaattataatatgaatatggaaactagcatgac 7608536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 312
Target Start/End: Complemental strand, 7622772 - 7622703
Alignment:
Q  243 aaaaatttattatattttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaa 312  Q
    |||||||||||  |||| ||||| |||||||||||||||| |||||| |||| |||||| ||||||||||    
T  7622772 aaaaatttattgcatttcatttataataatagtagagatacaagatgaaatcctaatatgaatatgaaaa 7622703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 333
Target Start/End: Original strand, 43018359 - 43018447
Alignment:
Q  245 aaatttattatattttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccact 333  Q
    |||||||||  |||| ||| | |||||||||||||||| ||||||||||| |||||| |||||| ||| || |||||| | ||||||||    
T  43018359 aaatttattgcatttcattcataataatagtagagatacaagatggaatcataatatgaatatggaaactagcatgacgcaaaaccact 43018447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 51952049 - 51951994
Alignment:
Q  267 aataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgac 322  Q
    |||||||||||||||| ||||||||||| |||||| |||||||||| || ||||||    
T  51952049 aataatagtagagatacaagatggaatcctaatatgaatatgaaaactagcatgac 51951994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 337
Target Start/End: Complemental strand, 21689868 - 21689780
Alignment:
Q  249 ttattatattttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactctag 337  Q
    ||||| ||||| ||| | |||||||||||||||| |||||| |||| |||||| |||||| ||| || |||||| | || |||||||||    
T  21689868 ttattgtatttcattcataataatagtagagatacaagatgaaatcataatatgaatatggaaactaacatgacgcaaagccactctag 21689780  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 8458010 - 8457955
Alignment:
Q  267 aataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgac 322  Q
    |||||||||||||||| |||||| |||| |||||| |||||||||| || ||||||    
T  8458010 aataatagtagagatacaagatgaaatcctaatatgaatatgaaaactagcatgac 8457955  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 334
Target Start/End: Complemental strand, 39383565 - 39383498
Alignment:
Q  267 aataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactc 334  Q
    |||||||||||||||| || |||||||| |||||| |||||| ||| || |||||| | |||||||||    
T  39383565 aataatagtagagatacaaaatggaatcataatatgaatatggaaattaacatgacgcaaaaccactc 39383498  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 26400289 - 26400227
Alignment:
Q  267 aataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaac 329  Q
    |||||||||||||||| || |||||||| |||||| |||||| ||| || |||||| ||||||    
T  26400289 aataatagtagagatacaatatggaatcataatatgaatatggaaactagcatgacgcgaaac 26400227  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 322
Target Start/End: Complemental strand, 39133773 - 39133716
Alignment:
Q  265 aaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgac 322  Q
    |||||||||||||||||| ||||| ||||| |||||| |||||| ||| || ||||||    
T  39133773 aaaataatagtagagatacaagattgaatcctaatatgaatatggaaactagcatgac 39133716  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 337
Target Start/End: Original strand, 55218673 - 55218742
Alignment:
Q  268 ataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactctag 337  Q
    |||||||||||| || ||||||||||| |||||| |||||| ||| || |||||| | || |||||||||    
T  55218673 ataatagtagaggtacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagccactctag 55218742  T

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Target: scaffold0360 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 322
Target Start/End: Original strand, 5339 - 5393
Alignment:
Q  268 ataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgac 322  Q
    ||||||||||||||| |||||||||||||||||| ||||| |||| || ||||||    
T  5339 ataatagtagagatacaagatggaatcttaatatgaatataaaaactaacatgac 5393  T

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Target: scaffold0279 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 322
Target Start/End: Complemental strand, 6837 - 6771
Alignment:
Q  256 attttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgac 322  Q
    |||| ||| |||||||||||||||||| ||||||||||| |||||| |||||| ||| || ||||||    
T  6837 atttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgac 6771  T

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Target: scaffold0016 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 322
Target Start/End: Complemental strand, 187250 - 187184
Alignment:
Q  256 attttatttaaaataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgac 322  Q
    |||| ||| |||||||||||||||||| ||||||||||| |||||| |||||| ||| || ||||||    
T  187250 atttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgac 187184  T

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Target: scaffold0004 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 337
Target Start/End: Complemental strand, 216575 - 216505
Alignment:
Q  267 aataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgacacgaaaccactctag 337  Q
    ||||||||||||||||| |||||||||| |||||| |||||||||| || |||| | | || |||||||||    
T  216575 aataatagtagagatattagatggaatcctaatatgaatatgaaaactagcatggcgcaaagccactctag 216505  T

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Target: scaffold0201 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 307
Target Start/End: Complemental strand, 20754 - 20703
Alignment:
Q  256 attttatttaaaataatagtagagatataagatggaatcttaatataaatat 307  Q
    |||| ||||| |||||||||||||||| |||||| ||||||||||| |||||    
T  20754 atttcatttataataatagtagagatacaagatgtaatcttaatatgaatat 20703  T

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Target: scaffold0450 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 5404 - 5350
Alignment:
Q  267 aataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatga 321  Q
    |||||||||||||||| |||||||||| ||||||| |||||| ||| || |||||    
T  5404 aataatagtagagatacaagatggaattttaatatgaatatggaaattagcatga 5350  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 58513 - 58457
Alignment:
Q  267 aataatagtagagatataagatggaatcttaatataaatatgaaaaatatcatgaca 323  Q
    |||||||||||||||| ||||||||| | |||||| |||||| ||| || |||||||    
T  58513 aataatagtagagatacaagatggaaccctaatatgaatatggaaactagcatgaca 58457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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