View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5944-Insertion-2 (Length: 623)
Name: NF5944-Insertion-2
Description: NF5944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5944-Insertion-2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 548; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 9 - 623
Target Start/End: Original strand, 36157143 - 36157760
Alignment:
| Q |
9 |
tgataatcctccgctccatctgcaaattgatcaaagtaatcaaacatattaatatatcatacatgctttggaaactcaagaattgtttccctttcatgca |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36157143 |
tgataatcctccgctccatctgcaaattgatcaaagtaatcaaacatattaatatatcatacatgctttggaaactcaagaattgtttccttttcatgca |
36157242 |
T |
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| Q |
109 |
gttagcatctaagatgcattttaaagacctaaaagagttcatgcagctatgccctatcatggacatgtcattatcgcttatgatagagggagaaaaatgt |
208 |
Q |
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| T |
36157243 |
gttagtatctaagatgcattttaaagagctaaaagagttcatgcagctacgccctatcatggacatgtcattatcgcttatgttagagggagaaaaatgt |
36157342 |
T |
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| Q |
209 |
aacatacctgaacaaaggtctccaactttctcttggtagtagcaaactgatgttttacccagagcaatgttagatcaagcctgagcagc-aaaataaaca |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36157343 |
aacatacctgaacaaaggtctccaactttctcttggtagtagcaaactgatgttttacccagagcaatgttagatcaagcctgagcagcaaaaataaaca |
36157442 |
T |
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| Q |
308 |
gacaaaagttagatggaaggtatataaaactatcaagatgttaccaaatatagaagatacatactaataaacataaaataaatttatatattctaatacg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36157443 |
gacaaaagttagatggaaggtatataaaactatcaagacgttaccaaatatagaagatacatactaataaatataaaataaatttatatattctaatacg |
36157542 |
T |
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| Q |
408 |
cgtcaacccactttcttattttattttttcttacaagaaagagcaagaactcctgaccatacatgagtgtagataataatttatttgtttcctagaaggt |
507 |
Q |
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| T |
36157543 |
cgtcaacccactttcttattttattttttcttacaagaaagagcaagaactcctgaccatacatgagtgtagataataatttatttgtttcctagaaggt |
36157642 |
T |
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| Q |
508 |
cttgttcagtattcttctacaaaagaagttttaatagatagcagaaataaaccacaatc--cacagagacaaaagatcaaatcatggacaaattcaggcc |
605 |
Q |
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| T |
36157643 |
cttgttcagtattcttctacaaaagaagttttaatagatagcagaaataaaccacagtcaacagagagacaaaagatcaaatcatggac-aattcaggcc |
36157741 |
T |
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| Q |
606 |
aggcactta-attattttg |
623 |
Q |
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| T |
36157742 |
aggcacttacattattttg |
36157760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 9 - 561
Target Start/End: Original strand, 36152220 - 36152767
Alignment:
| Q |
9 |
tgataatcctccgctccatctgcaaattgatcaaagtaatcaaacatattaatatatcatacatgctttggaaactcaagaattgtttccctttcatgca |
108 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
36152220 |
tgataatccttcgttccatctgcaaattgatcaaagtaatcaaacatattaatatatcata--tgctttggaaactcaagaattgtttccccttcatgca |
36152317 |
T |
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| Q |
109 |
gttagcatctaagatgcattttaaagacctaaaagagttcatgcagctatgccctatcatggacatgtcattatcgcttatgatagagggagaaaaatgt |
208 |
Q |
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| T |
36152318 |
gttagtatctaagatgcattttaaagagctaaaagagttcatgcagctatgccctatcatggacatgtcgttgtcgcttatgtgagagggagaaaaatgt |
36152417 |
T |
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| Q |
209 |
aacatacctgaacaaaggtctccaactttctcttggtagtagcaaactgatgttttacccagagcaatgttagatcaagcctgagcagcaaaataaacag |
308 |
Q |
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|||||||||||||||||| ||||||||||||||||||| | ||||||| |||||||||||||||||||||| || ||||||||||||||||||||| || |
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| T |
36152418 |
aacatacctgaacaaaggcctccaactttctcttggtattggcaaactcatgttttacccagagcaatgttcgagaaagcctgagcagcaaaataaatag |
36152517 |
T |
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| Q |
309 |
acaaaagttagatggaaggtatataaaactatcaagatgttaccaaatatagaagatacatactaataaacataaaataaatttatatattctaatacgc |
408 |
Q |
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| T |
36152518 |
acaaaaattagatcggaggtatataaaattatcaagactttaccaaatatagaagatagatac---taaatatgaaatatatttacatattctaatacgc |
36152614 |
T |
|
| Q |
409 |
gtcaacccactttcttattttattttttcttacaagaaagagcaagaactcctgaccatacatgagtgtagataa-taatttatttgtttcctagaaggt |
507 |
Q |
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| T |
36152615 |
gtcaatccaatttcttatttaattttttcttaaaagaaagagcaagagctcttgaccatacatgagtgtagataattattttatttgtttcct---aggt |
36152711 |
T |
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| Q |
508 |
cttgttcagtattcttctacaaaagaagttttaatag--atagcagaaataaacca |
561 |
Q |
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| | || ||||||||||||||||||||||| |||||| |||||||||||| |||| |
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| T |
36152712 |
catatttagtattcttctacaaaagaagttgtaatagatatagcagaaatagacca |
36152767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 336 - 374
Target Start/End: Complemental strand, 41708338 - 41708300
Alignment:
| Q |
336 |
actatcaagatgttaccaaatatagaagatacatactaa |
374 |
Q |
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| T |
41708338 |
actatcaagatgttactaaatatataagatacatactaa |
41708300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 369
Target Start/End: Original strand, 25160251 - 25160284
Alignment:
| Q |
336 |
actatcaagatgttaccaaatatagaagatacat |
369 |
Q |
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| T |
25160251 |
actatcaagatgttaccaaatataaaagatacat |
25160284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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