View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5944-Insertion-6 (Length: 254)
Name: NF5944-Insertion-6
Description: NF5944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5944-Insertion-6 |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 8 - 254
Target Start/End: Original strand, 5460588 - 5460834
Alignment:
| Q |
8 |
acaatgtacaccagaaattgtgttagcttgaccagtaatcataattccaatattagcagaaaaaatcacaacatcagtaattgcattatcattcccgtga |
107 |
Q |
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| T |
5460588 |
acaatgtacaccagaaattgtgttagcttgaccagtaatcataattccaatattagcagaaaaaatcacaacatcagtaattgcattatcattcccttga |
5460687 |
T |
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| Q |
108 |
agactaattccaatgcctgaaaattttctttcatttttgtcacctcctgcagttatgtgttgaccaatgaaagtgtttctaatgtatgtttcatgaccac |
207 |
Q |
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| T |
5460688 |
agactaattccaatgcctgaaaattttctttcatttttgtcacctcctgcagttatgtgttgaccaatgaaagtgtttctaatgtatgtttcatgaccac |
5460787 |
T |
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| Q |
208 |
tttggactaaaattccatttgtgatgaaatgtgtgatgtaacaattg |
254 |
Q |
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| T |
5460788 |
tttggactaaaattccatttgtgatgaaatgtgtgatgtaacaattg |
5460834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 254
Target Start/End: Complemental strand, 15160478 - 15160232
Alignment:
| Q |
8 |
acaatgtacaccagaaattgtgttagcttgaccagtaatcataattccaatattagcagaaaaaatcacaacatcagtaattgcattatcattcccgtga |
107 |
Q |
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| T |
15160478 |
acaatgtacaccagaaaatgtgtttgcttgaccagttaccatgattcctatagcagcagagaaaattacaacatcggtgacagcattatcgttaccttgg |
15160379 |
T |
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| Q |
108 |
agactaattccaatgcctgaaaattttctttcatttttgtcacctcctgcagttatgtgttgaccaatgaaagtgtttctaatgtatgtttcatgaccac |
207 |
Q |
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| T |
15160378 |
atgtttattcctgtgcctgagaaattcctttcgtttttatcgcctccggcagttatgtgctggccaaggaaagagtttcttatgtatgtttcatggccac |
15160279 |
T |
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| Q |
208 |
tttggactaaaattccatttgtgatgaaatgtgtgatgtaacaattg |
254 |
Q |
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| T |
15160278 |
tttggactaaaattccattggtagtgaaatgtgtaatgtaacaattg |
15160232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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