View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5944-Insertion-8 (Length: 125)
Name: NF5944-Insertion-8
Description: NF5944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5944-Insertion-8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 7e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 7e-59
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 46024150 - 46024032
Alignment:
| Q |
7 |
catcttctgctctatcaaaagtacctaaccatagtcttagtttctgtgatgagtctttgatctcagctatccatcttcctgatggcctttgtctcactcc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46024150 |
catcttctgctctatcaaaagtacctaaccatagtcttagtttctgtgatgagtctttgatctcagctatccatcttcctgatggcctttgcctcactcc |
46024051 |
T |
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| Q |
107 |
tagatactttttctgatga |
125 |
Q |
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||||||||||||||||||| |
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| T |
46024050 |
tagatactttttctgatga |
46024032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 7e-59
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 46265217 - 46265335
Alignment:
| Q |
7 |
catcttctgctctatcaaaagtacctaaccatagtcttagtttctgtgatgagtctttgatctcagctatccatcttcctgatggcctttgtctcactcc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46265217 |
catcttctgctctatcaaaagtacctaaccatagtcttagtttctgtgatgagtctttgatctcagctatccatcttcctgatggcctttgcctcactcc |
46265316 |
T |
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| Q |
107 |
tagatactttttctgatga |
125 |
Q |
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||||||||||||||||||| |
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| T |
46265317 |
tagatactttttctgatga |
46265335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 12508680 - 12508729
Alignment:
| Q |
54 |
gatgagtctttgatctcagctatccatcttcctgatggcctttgtctcac |
103 |
Q |
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| T |
12508680 |
gatgagtctttgatctcagctacccatctacctgatggcctttgtctcac |
12508729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 3160268 - 3160225
Alignment:
| Q |
60 |
tctttgatctcagctatccatcttcctgatggcctttgtctcac |
103 |
Q |
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| T |
3160268 |
tcttttatctcagctacccatcttcctgatggcctttgtctcac |
3160225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 33274344 - 33274382
Alignment:
| Q |
59 |
gtctttgatctcagctatccatcttcctgatggcctttg |
97 |
Q |
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| T |
33274344 |
gtctttgatctcagctacccatctccctgatggcctttg |
33274382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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