View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5944_low_1 (Length: 434)
Name: NF5944_low_1
Description: NF5944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5944_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 10500403 - 10500813
Alignment:
| Q |
1 |
ggtgagccaaatcaaattcatcctattttcaagttagtgcatatttggaatattgcggtacatttacaaaattatagtgacactgtgattttgttgaagt |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||||||| || ||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
10500403 |
ggtgagccaaatcaaattcatc-tattttcaagttagggcatatttaga---ttgcggtacatttacaaaattgtagtgacactgtaattttgttgaagt |
10500498 |
T |
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| Q |
101 |
tttagattttagttattgtcaaaattacgtcgactcgctataacataatgtatttatgttattaatttaaatcttggttaacatgtaggatttgaacttc |
200 |
Q |
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| T |
10500499 |
tttagattttagttattgtcaaaattacgtcgactcgctataacataatgtatttatgttattaatttaaatcttgattaacatgtagggtttgaacttc |
10500598 |
T |
|
| Q |
201 |
cactagtggcatgttgtggcaatggaggaaagtacaactataacattcgtgctggttgtggagcaaccataaacattaatggtacaaacactgttgtggg |
300 |
Q |
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| T |
10500599 |
cactggtggcttgttgtggcaatggaggaaagtacaactataacattcgtgctggttgtggagcaaccataaacataaatggtacaaacactgttgtggg |
10500698 |
T |
|
| Q |
301 |
ttcatgtaaaaaaccatctactagaataatatgggatggtactcattacacagaggcagctaacaagattgtctttgatctaatctctaatggagctttt |
400 |
Q |
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| T |
10500699 |
ttcatgtaaaaaaccatcaactagaataatatgggatggtactcattacacagaggcagctaacaagattgtctttgatcaaatctctaatggagctttt |
10500798 |
T |
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| Q |
401 |
acggatcctcctatt |
415 |
Q |
| |
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| T |
10500799 |
acggatcctcctatt |
10500813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 186 - 411
Target Start/End: Original strand, 10486144 - 10486369
Alignment:
| Q |
186 |
taggatttgaacttccactagtggcatgttgtggcaatggaggaaagtacaactataacattcgtgctggttgtggagcaaccataaacattaatggtac |
285 |
Q |
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| T |
10486144 |
tagggtttgagcttccactagtggcatgttgtggctatggaggggagtacaactatgacaatcgtgctagatgtggagaaaccataaatataaatggtac |
10486243 |
T |
|
| Q |
286 |
aaacactgttgtgggttcatgtaaaaaaccatctactagaataatatgggatggtactcattacacagaggcagctaacaagattgtctttgatctaatc |
385 |
Q |
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| T |
10486244 |
aagaatttttgtgggttcgtgcaaaagtccatctactagaataatatgggatggaacccattacacagaggcagctaataagattgtctttgatcaaatc |
10486343 |
T |
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| Q |
386 |
tctaatggagcttttacggatcctcc |
411 |
Q |
| |
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|||| ||||||||| || |||||||| |
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| T |
10486344 |
tctactggagctttcacagatcctcc |
10486369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 178 - 416
Target Start/End: Original strand, 10503653 - 10503885
Alignment:
| Q |
178 |
ttaacatgtaggatttgaacttccactagtggcatgttgtggcaatggaggaaagtacaactataacattcgtgctggttgtggagcaaccataaacatt |
277 |
Q |
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| T |
10503653 |
ttaatatgtaggatttgagcttccacatgtggcatgttgtggctatggaggaaagtacaac------attcgtgttggctgtggagaaaccataaacata |
10503746 |
T |
|
| Q |
278 |
aatggtacaaacactgttgtgggttcatgtaaaaaaccatctactagaataatatgggatggtactcattacacagaggcagctaacaagattgtctttg |
377 |
Q |
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| T |
10503747 |
aatggtacaaaaattgttgctggatcgtgtaaaaacccatctactagaatcatttgggatggttcccacttcacagaagcagctaacaagattgtctttg |
10503846 |
T |
|
| Q |
378 |
atctaatctctaatggagcttttacggatcctcctattt |
416 |
Q |
| |
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||| ||| |||| |||||||| | ||||||||||||| |
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| T |
10503847 |
atcaaatatctaccggagctttctctgatcctcctattt |
10503885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 178 - 376
Target Start/End: Original strand, 10509062 - 10509254
Alignment:
| Q |
178 |
ttaacatgtaggatttgaacttccactagtggcatgttgtggcaatggaggaaagtacaactataacattcgtgctggttgtggagcaaccataaacatt |
277 |
Q |
| |
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|||| |||||||||| || |||||| | ||||||||||||||| |||||||| |||| ||||||| ||| ||||||||||||| |||||||||| |
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| T |
10509062 |
ttaatatgtaggattcgagcttccatttgtggcatgttgtggctatggaggagagta------taacattggtgttggttgtggagcatccataaacata |
10509155 |
T |
|
| Q |
278 |
aatggtacaaacactgttgtgggttcatgtaaaaaaccatctactagaataatatgggatggtactcattacacagaggcagctaacaagattgtcttt |
376 |
Q |
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| T |
10509156 |
aatggtacaaaaattgttgcaggttcatgcaaaaatccatcaactagaatcatatgggatggtgttcattacacagaagcagctaacgagattgtcttt |
10509254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 24578564 - 24578527
Alignment:
| Q |
68 |
aaaattatagtgacactgtgattttgttgaagttttag |
105 |
Q |
| |
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||||||| ||||| |||||||||||||||||||||||| |
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| T |
24578564 |
aaaattacagtgatactgtgattttgttgaagttttag |
24578527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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