View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5944_low_2 (Length: 223)

Name: NF5944_low_2
Description: NF5944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5944_low_2
NF5944_low_2
[»] chr8 (13 HSPs)
chr8 (10-215)||(28846493-28846698)
chr8 (10-200)||(13152489-13152682)
chr8 (10-198)||(27190660-27190851)
chr8 (10-199)||(24333602-24333794)
chr8 (10-206)||(14446714-14446912)
chr8 (10-124)||(9256355-9256469)
chr8 (13-87)||(30791556-30791633)
chr8 (10-87)||(16532726-16532806)
chr8 (10-87)||(21958512-21958592)
chr8 (163-201)||(9256307-9256345)
chr8 (10-65)||(10467786-10467844)
chr8 (13-47)||(42446961-42446995)
chr8 (10-58)||(10014530-10014579)
[»] chr4 (10 HSPs)
chr4 (10-215)||(31944488-31944696)
chr4 (10-113)||(4325387-4325492)
chr4 (10-87)||(12211321-12211401)
chr4 (10-87)||(27364883-27364963)
chr4 (10-87)||(53693129-53693209)
chr4 (10-87)||(55464755-55464835)
chr4 (152-200)||(24104671-24104719)
chr4 (157-199)||(51379529-51379571)
chr4 (10-45)||(3074414-3074449)
chr4 (108-170)||(24104597-24104659)
[»] chr7 (14 HSPs)
chr7 (10-215)||(43727868-43728076)
chr7 (10-206)||(9230282-9230481)
chr7 (10-136)||(23179980-23180109)
chr7 (49-140)||(23804635-23804726)
chr7 (82-201)||(24276397-24276517)
chr7 (85-216)||(5287939-5288070)
chr7 (71-215)||(25024455-25024599)
chr7 (10-87)||(45197644-45197723)
chr7 (10-87)||(27387401-27387481)
chr7 (10-87)||(19399978-19400058)
chr7 (10-87)||(26493809-26493889)
chr7 (49-103)||(8638598-8638652)
chr7 (10-77)||(18375416-18375486)
chr7 (10-87)||(38575384-38575464)
[»] chr5 (8 HSPs)
chr5 (12-215)||(8785655-8785860)
chr5 (10-215)||(3055353-3055562)
chr5 (10-200)||(11852602-11852795)
chr5 (10-215)||(27168898-27169098)
chr5 (10-142)||(23244665-23244800)
chr5 (10-83)||(1280382-1280458)
chr5 (10-87)||(203851-203930)
chr5 (13-87)||(26540753-26540830)
[»] scaffold0178 (1 HSPs)
scaffold0178 (10-200)||(17627-17820)
[»] chr2 (8 HSPs)
chr2 (10-206)||(12539455-12539653)
chr2 (10-215)||(34317562-34317770)
chr2 (10-83)||(35649755-35649831)
chr2 (10-87)||(33453283-33453363)
chr2 (13-87)||(22464670-22464747)
chr2 (13-87)||(22483549-22483626)
chr2 (13-87)||(34526352-34526429)
chr2 (10-47)||(13308759-13308796)
[»] chr3 (8 HSPs)
chr3 (10-199)||(3856971-3857163)
chr3 (10-199)||(51261867-51262059)
chr3 (10-192)||(15667868-15668053)
chr3 (10-87)||(43137127-43137207)
chr3 (10-87)||(31989029-31989109)
chr3 (10-87)||(53710398-53710478)
chr3 (10-87)||(24908488-24908568)
chr3 (10-87)||(37381964-37382044)
[»] chr1 (14 HSPs)
chr1 (11-215)||(30559101-30559308)
chr1 (10-198)||(48606707-48606898)
chr1 (10-215)||(9636994-9637201)
chr1 (10-215)||(14498770-14498977)
chr1 (10-127)||(52753912-52754032)
chr1 (10-102)||(25017371-25017466)
chr1 (10-103)||(32379950-32380043)
chr1 (10-102)||(40864814-40864909)
chr1 (10-87)||(17127439-17127519)
chr1 (10-87)||(26273024-26273104)
chr1 (113-215)||(30054737-30054839)
chr1 (10-47)||(35949073-35949110)
chr1 (158-215)||(52754030-52754087)
chr1 (15-47)||(30054864-30054896)
[»] chr6 (8 HSPs)
chr6 (14-215)||(12180624-12180828)
chr6 (10-215)||(11970832-11971040)
chr6 (10-87)||(24074412-24074492)
chr6 (10-80)||(25599159-25599232)
chr6 (10-58)||(3050894-3050943)
chr6 (157-199)||(8035493-8035535)
chr6 (12-42)||(1296557-1296587)
chr6 (85-127)||(8035438-8035480)
[»] scaffold0002 (1 HSPs)
scaffold0002 (10-174)||(435445-435617)
[»] scaffold0007 (1 HSPs)
scaffold0007 (13-87)||(259918-259995)
[»] scaffold0019 (1 HSPs)
scaffold0019 (10-87)||(134949-135029)
[»] scaffold0015 (1 HSPs)
scaffold0015 (10-87)||(214256-214336)
[»] scaffold0168 (1 HSPs)
scaffold0168 (13-87)||(15814-15891)
[»] scaffold0012 (1 HSPs)
scaffold0012 (13-87)||(197105-197182)
[»] scaffold0198 (1 HSPs)
scaffold0198 (10-47)||(1439-1476)


Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 28846698 - 28846493
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtacatcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28846698 acatcatcaagtgacttgaatatctcccgctcgatgtacatcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggac 28846599  T
Q  110 ttataagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatattctt 209  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28846598 ttataagattattttactagcttattgacagggtttggcaactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatattgtt 28846499  T
Q  210 ggagat 215  Q
    | ||||    
T  28846498 gaagat 28846493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 13152489 - 13152682
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacg 106  Q
    |||||||||| |||||||||||||||||||||||||||    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  13152489 acatcatcaaatgacttgaatatctcccgctcgatgtaacatatcatcaagtcattgaaccacacagcgttgatcatgttggtaacaattctttctcacg 13152588  T
Q  107 gacttataagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggttatagctttggtgcaccc 200  Q
    | |||||||||||||||||||||||| |||||| || |||  |||||||  |||| |||||||||||||||||||| |||||||||||||||||    
T  13152589 ggcttataagattattttactagctttttgacatggcttgataactggtgtacttccaacttttgttgatgttggtaatagctttggtgcaccc 13152682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 10 - 198
Target Start/End: Complemental strand, 27190851 - 27190660
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacg 106  Q
    ||||||||||||||||||||||||||||||| | || |    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  27190851 acatcatcaagtgacttgaatatctcccgctaggtgcaacatatcatcaagtcattgaaccacacatcgttgatcttgtttgtaacaattctttctcgcg 27190752  T
Q  107 gacttataagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggttatagctttggtgcac 198  Q
    | |||||||||||||||||||||||| |||||| || |||  ||||||| ||||| |||||||||||||||||||| |||||||||||||||    
T  27190751 ggcttataagattattttactagcttgttgacatggcttgacaactggtggacttccaacttttgttgatgttggtaatagctttggtgcac 27190660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 10 - 199
Target Start/End: Complemental strand, 24333794 - 24333602
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgt---acatcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacg 106  Q
    ||||||||||||||||||||||||||||||||  |||   | ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  24333794 acatcatcaagtgacttgaatatctcccgctcagtgtaacatatcataaagtcattgaatcatacatcgttgatcttgttggtaacaattctttctcacg 24333695  T
Q  107 gacttataagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggttatagctttggtgcacc 199  Q
    | ||||||||||||||||||||||||||||||| |  |||  ||| ||| ||||| |||||||| ||||||||||| |||| |||||||||||    
T  24333694 ggcttataagattattttactagcttattgacaagacttgacaaccggtggacttccaacttttattgatgttggtaatagttttggtgcacc 24333602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 10 - 206
Target Start/End: Complemental strand, 14446912 - 14446714
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacg 106  Q
    |||||||||||||||||||||||||| | || | ||||    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |     
T  14446912 acatcatcaagtgacttgaatatctctctcttggtgtaacatatcatcaagtcattgaaccacaaatcgttgatcttgt-ggtaacaattctttctcgca 14446814  T
Q  107 gacttataagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatatt 206  Q
    |||||||||||||||||||||||||||||||||||  |||   |||||| ||||| |||||||||||||||||||| |||||||||||| |||| |||||    
T  14446813 gacttataagattattttactagcttattgacaggacttgactactggtggacttccaacttttgttgatgttggtaatagctttggtgtacccaatatt 14446714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 10 - 124
Target Start/End: Complemental strand, 9256469 - 9256355
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgt---acatcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacg 106  Q
    |||||||||||||||||||||||||||||||||||||   | |||||||||||||| ||||||||||| |||||| | |||||   ||||||||||||||    
T  9256469 acatcatcaagtgacttgaatatctcccgctcgatgtaacatatcatcaagtcattaaaccacacatcattgatcatattggt---aattctttctcacg 9256373  T
Q  107 gacttataagattatttt 124  Q
      ||||||||||||||||    
T  9256372 tgcttataagattatttt 9256355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 30791556 - 30791633
Alignment:
Q  13 tcatcaagtgacttgaatatctcccgctcgatgt---acatcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    |||||||||||||||||||||||||||||| |||   | ||||||||||||||||||||| |||  ||||||||||||    
T  30791556 tcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcattgaaccactcattcttgatcttgttg 30791633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 16532726 - 16532806
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    |||||||||||||||||||||||||| | || | | ||    |||||||||||||||||||||||||||||||||||||||    
T  16532726 acatcatcaagtgacttgaatatctctcacttggtataacatatcatcaagtcattgaaccacacatcgttgatcttgttg 16532806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 21958592 - 21958512
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    |||||||||||||||| |||||||||| ||||| ||||    |||||||||||||| ||||||| || |||||||||||||    
T  21958592 acatcatcaagtgactcgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacatattgttgatcttgttg 21958512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 9256345 - 9256307
Alignment:
Q  163 caacttttgttgatgttggttatagctttggtgcacccg 201  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  9256345 caacttttgttgatgttggtaatagctttggtgcacccg 9256307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 10467844 - 10467786
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgt---acatcatcaagtcattgaa 65  Q
    |||||||||| |||||||| |||||||||||||||||   | |||||||||||||||||    
T  10467844 acatcatcaaatgacttgattatctcccgctcgatgtaacatatcatcaagtcattgaa 10467786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 42446995 - 42446961
Alignment:
Q  13 tcatcaagtgacttgaatatctcccgctcgatgta 47  Q
    |||||||||||||||||||||| ||||||||||||    
T  42446995 tcatcaagtgacttgaatatcttccgctcgatgta 42446961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 10014530 - 10014579
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgt-acatcatcaagt 58  Q
    ||||||||||||||| ||||||||| ||||||| ||| ||||||||||||    
T  10014530 acatcatcaagtgacatgaatatcttccgctcggtgtaacatcatcaagt 10014579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 31944696 - 31944488
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacg 106  Q
    |||||||||||||||||||||||||| | |||| ||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31944696 acatcatcaagtgacttgaatatctcacactcggtgtaacatatcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacg 31944597  T
Q  107 gacttataagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatatt 206  Q
      |||||||||||||||||||||||||||| ||||| |||  ||||||| ||||| ||||||||||| |||||||| ||||||||  |||||||| ||||    
T  31944596 agcttataagattattttactagcttattggcagggcttgataactggtggacttccaacttttgttaatgttggtaatagctttcatgcacccgctatt 31944497  T
Q  207 cttggagat 215  Q
     ||| ||||    
T  31944496 gttgaagat 31944488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 10 - 113
Target Start/End: Complemental strand, 4325492 - 4325387
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacg 106  Q
    |||||||||||||  |||| |||||||| |||| ||||    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  4325492 acatcatcaagtgggttgattatctcccactcggtgtaacatatcatcaagtcattgaaccacacatcgttgatcttgttggtaac-attctttcttacg 4325394  T
Q  107 gacttat 113  Q
    | |||||    
T  4325393 ggcttat 4325387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 12211321 - 12211401
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    |||||||||| |||||||||||||||| | ||| ||||    |||||||||||||||||||||||||||||||||||||||    
T  12211321 acatcatcaaatgacttgaatatctcctgttcggtgtaacatatcatcaagtcattgaaccacacatcgttgatcttgttg 12211401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 27364963 - 27364883
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgt---acatcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    ||||||||||||||||||||||||||||||||| |||   | |||||||||||||| |||||||||  |||||||||||||    
T  27364963 acatcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcatttaaccacacactgttgatcttgttg 27364883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 53693129 - 53693209
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    ||||||||||||| ||||| ||||||||||||||||||    |||||||||||||||||||||||| |||||||| |||||    
T  53693129 acatcatcaagtgccttgattatctcccgctcgatgtaacatatcatcaagtcattgaaccacacaccgttgatcatgttg 53693209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 55464755 - 55464835
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    ||||||||||||||||||| | ||||||||||| ||||    |||||||||||||| |||||||||| |||||||||||||    
T  55464755 acatcatcaagtgacttgattttctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 55464835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 24104671 - 24104719
Alignment:
Q  152 tggtagacttacaacttttgttgatgttggttatagctttggtgcaccc 200  Q
    |||| ||||| |||||||||||||||||||| |||||||||||||||||    
T  24104671 tggtggactttcaacttttgttgatgttggtgatagctttggtgcaccc 24104719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 51379571 - 51379529
Alignment:
Q  157 gacttacaacttttgttgatgttggttatagctttggtgcacc 199  Q
    ||||| |||||||||||||||||||| ||||||||||||||||    
T  51379571 gacttccaacttttgttgatgttggtaatagctttggtgcacc 51379529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 3074449 - 3074414
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatg 45  Q
    ||||||||||||||||||| ||||||||||||||||    
T  3074449 acatcatcaagtgacttgattatctcccgctcgatg 3074414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 24104597 - 24104659
Alignment:
Q  108 acttataagattattttactagcttattgacagggtttggaaactggtagacttacaactttt 170  Q
    |||||||||||| |||||||||||||||| ||| | |||  ||||||| ||||| ||||||||    
T  24104597 acttataagattcttttactagcttattggcagagcttgataactggtggacttccaactttt 24104659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 1e-58; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 43728076 - 43727868
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacg 106  Q
    |||||||||| |||||||||||||||||| ||||| ||    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||      
T  43728076 acatcatcaactgacttgaatatctcccgttcgatataacatatcatcaagtcattgaaccacacatcgttgatcatgttggtaacaattctttctcata 43727977  T
Q  107 gacttataagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatatt 206  Q
    | ||||||||||||||||||||||||||||||| |  |||  |||||||  |||| |||||||||||||||||||| |||||||||||||||||| ||||    
T  43727976 ggcttataagattattttactagcttattgacatgagttgataactggtgtacttccaacttttgttgatgttggtaatagctttggtgcacccgctatt 43727877  T
Q  207 cttggagat 215  Q
     ||| ||||    
T  43727876 gttgaagat 43727868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 10 - 206
Target Start/End: Complemental strand, 9230481 - 9230282
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacg 106  Q
    |||||||||| |||||||| |||||||||||| |||||    ||||||||||||||||||||||||||||||| | |||||||||||||| ||||| |||    
T  9230481 acatcatcaaatgacttgagtatctcccgctctatgtaacatatcatcaagtcattgaaccacacatcgttgaccatgttggtaacaattttttctaacg 9230382  T
Q  107 gacttataagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatatt 206  Q
    | ||||||||||||||||||||||||||||||| || |||  ||||| |  | || |||||||||||||||||| | |||||||||||||||||| ||||    
T  9230381 ggcttataagattattttactagcttattgacatggcttgataactgatgtatttccaacttttgttgatgttgataatagctttggtgcacccgctatt 9230282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 23179980 - 23180109
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacg 106  Q
    |||| |||||||| |||||||||||| |||||| ||||    |||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||    
T  23179980 acattatcaagtgccttgaatatctctcgctcggtgtaacatatcatcaagttattgaaacacacatcgttgatcttgttggtaacaattatttctcacg 23180079  T
Q  107 gacttataagattattttactagcttattg 136  Q
      ||||||||||||||||||||||||||||    
T  23180080 agcttataagattattttactagcttattg 23180109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 23804635 - 23804726
Alignment:
Q  49 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacag 140  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||    
T  23804635 atcaacaagtcattgaaccacacatcgttgatcttgttggtaaccattctttctcacaaacttataagattattttactagcttattgacag 23804726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 82 - 201
Target Start/End: Original strand, 24276397 - 24276517
Alignment:
Q  82 ttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttgga-aactggtagacttacaacttttgttgatgttg 180  Q
    ||||||||||||||||||||| |||   ||||||||||| |||||||||||||||| || || | || ||||||| ||||| ||||||||||||||||||    
T  24276397 ttgttggtaacaattctttctaacgaggttataagattaatttactagcttattgatagagtcttgacaactggtggacttccaacttttgttgatgttg 24276496  T
Q  181 gttatagctttggtgcacccg 201  Q
    |||||||||||||||||||||    
T  24276497 gttatagctttggtgcacccg 24276517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 85 - 216
Target Start/End: Complemental strand, 5288070 - 5287939
Alignment:
Q  85 ttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggtta 184  Q
    ||||||||| ||||||||||||  ||| ||||||||||||||||||||||||||||| ||||  ||| ||| ||||| ||||||||||||||| |||| |    
T  5288070 ttggtaacacttctttctcacgagcttgtaagattattttactagcttattgacaggatttgacaaccggtggacttccaacttttgttgatgatggtaa 5287971  T
Q  185 tagctttggtgcacccgatattcttggagatg 216  Q
    |||||||||| |||||| |||| ||| |||||    
T  5287970 tagctttggtacacccgctatttttgaagatg 5287939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 71 - 215
Target Start/End: Complemental strand, 25024599 - 25024455
Alignment:
Q  71 catcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtagacttacaactttt 170  Q
    |||||||||| || || |||||||||| ||||| | | ||||||||||||||||||||||||||| ||| || |||  || |||| ||||| ||||||||    
T  25024599 catcgttgattttattagtaacaattccttctcgccggcttataagattattttactagcttattaacatggattgacaattggtggacttccaactttt 25024500  T
Q  171 gttgatgttggttatagctttggtgcacccgatattcttggagat 215  Q
    ||||||| |||| |||||||||||||| ||| |||| ||| ||||    
T  25024499 gttgatgctggtaatagctttggtgcatccgctattgttgaagat 25024455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 45197723 - 45197644
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatg--tacatcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    ||||| ||||||||||||||||||||| ||||||||  || ||||||||||||||||||||||||| |||||||||||||    
T  45197723 acatcgtcaagtgacttgaatatctcctgctcgatgaatatatcatcaagtcattgaaccacacattgttgatcttgttg 45197644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 27387401 - 27387481
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgt---acatcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    ||||||||||||||||||||||||||||||||| |||   | |||||||||||||| |||||||||| |||||||||||||    
T  27387401 acatcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 27387481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 19400058 - 19399978
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    ||||||||||| ||||||||||||||||||||| ||||    |||||||||||||| |||||||||| |||||||||||||    
T  19400058 acatcatcaagcgacttgaatatctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 19399978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 26493809 - 26493889
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgta---catcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    ||||||||||||||||||||||||||||||||| ||||    |||||||||||||| |||||||||| ||| |||||||||    
T  26493809 acatcatcaagtgacttgaatatctcccgctcggtgtaacgtatcatcaagtcatttaaccacacattgttcatcttgttg 26493889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 8638652 - 8638598
Alignment:
Q  49 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctc 103  Q
    |||||||||| ||| |||||||| |||||||||||||||||||||||||||||||    
T  8638652 atcatcaagtaattaaaccacacgtcgttgatcttgttggtaacaattctttctc 8638598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 18375486 - 18375416
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgtt 77  Q
    |||| ||| ||||| ||||||||||||||||| |||||    |||||||||||||||||||||||||||||    
T  18375486 acattatctagtgatttgaatatctcccgctccatgtaatatatcatcaagtcattgaaccacacatcgtt 18375416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 38575384 - 38575464
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgt---acatcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    ||||||||||||||||| ||||||||||||||| |||   | ||||||||||| || |||||| ||| |||||| ||||||    
T  38575384 acatcatcaagtgactttaatatctcccgctcggtgtaacatatcatcaagtcgttcaaccacccattgttgatattgttg 38575464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 12 - 215
Target Start/End: Complemental strand, 8785860 - 8785655
Alignment:
Q  12 atcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacgga 108  Q
    |||||||| ||| |||||||||||||||| ||||||    || |||||||||||||||||||||||||||||||||||||||||||||||||||||  |     
T  8785860 atcatcaactgaattgaatatctcccgcttgatgtaatatattatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcattg- 8785762  T
Q  109 cttataagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatattct 208  Q
    ||||||||||||||||||||||||||| || |||||||  |||| || ||||| |||||||||||||||||||| |||||||||||||||||| |||| |    
T  8785761 cttataagattattttactagcttattaacggggtttgataactagtggacttccaacttttgttgatgttggtaatagctttggtgcacccgctattgt 8785662  T
Q  209 tggagat 215  Q
    || ||||    
T  8785661 tgaagat 8785655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 3055562 - 3055353
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacg 106  Q
    |||||||||| |||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3055562 acatcatcaaatgacttgaatatctcccgctcgatgtaacatatcatcaagtcattgaaccacacatcgttgatcatgttggtaacaattctttctcacg 3055463  T
Q  107 gacttataagattattttactagcttattgacagggtttggaaactggtagacttacaac-ttttgttgatgttggttatagctttggtgcacccgatat 205  Q
    | ||||||||||||||||||||||||||||||| || |||  |||||||  ||||  | |  ||||||||||||| | |||||||||||||||||| |||    
T  3055462 ggcttataagattattttactagcttattgacatggcttgataactggtttacttctaccaatttgttgatgttgataatagctttggtgcacccgctat 3055363  T
Q  206 tcttggagat 215  Q
    | ||| ||||    
T  3055362 tgttgaagat 3055353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 10 - 200
Target Start/End: Complemental strand, 11852795 - 11852602
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacg 106  Q
    |||||||||||||| || ||||||||||| ||| ||||    |||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||    
T  11852795 acatcatcaagtgagttaaatatctcccgttcggtgtaacatatcatcaagtcattgaaccacacatctttcatcttgttggtaataattctttctcacg 11852696  T
Q  107 gacttataagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggttatagctttggtgcaccc 200  Q
    |||||||||||||||||||||||||||||||||||  |||  ||||| | || ||   ||||||||||||||| || |||| ||||||||||||    
T  11852695 gacttataagattattttactagcttattgacaggacttgacaactgatggatttttcacttttgttgatgttagtaatagttttggtgcaccc 11852602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 10 - 215
Target Start/End: Original strand, 27168898 - 27169098
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtacatcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggac 109  Q
    |||| |||||||||||||||||||||||||||| ||||      ||  | ||||||||||||||||||||||||||| ||||||||| ||||||| || |    
T  27168898 acattatcaagtgacttgaatatctcccgctcggtgtaa-----catattattgaaccacacatcgttgatcttgtttgtaacaattatttctcatgggc 27168992  T
Q  110 ttataagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatattctt 209  Q
    |||||||||||||||||||||||||||||| |  |||  ||||||| ||||| || ||||||||||||||||| ||||||||||| |||||| |||| ||    
T  27168993 ttataagattattttactagcttattgacaagacttgataactggtggacttccatcttttgttgatgttggtaatagctttggtacacccgctattatt 27169092  T
Q  210 ggagat 215  Q
    | ||||    
T  27169093 gaagat 27169098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 10 - 142
Target Start/End: Original strand, 23244665 - 23244800
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacg 106  Q
    |||||||||||||||| ||||| || ||||||||  ||    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||      
T  23244665 acatcatcaagtgactagaataacttccgctcgacataacatatcatcaagtcattgaacgacacatcgttgatcttgttggtaacaattctttctcatt 23244764  T
Q  107 gacttataagattattttactagcttattgacaggg 142  Q
    | ||||||||||||||||||||||||||||||||||    
T  23244765 ggcttataagattattttactagcttattgacaggg 23244800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 1280458 - 1280382
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgt---acatcatcaagtcattgaaccacacatcgttgatctt 83  Q
    ||||||||||||||||||||||||||||||||| |||   | |||||||| |||||||||||||||| |||||||||    
T  1280458 acatcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaaatcattgaaccacacattgttgatctt 1280382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 203930 - 203851
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgt---acatcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    ||||||||||||||||||||||||||||||||| |||   | ||||||||||||||  |  |||||| |||||||||||||    
T  203930 acatcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcatttta-tacacattgttgatcttgttg 203851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 26540753 - 26540830
Alignment:
Q  13 tcatcaagtgacttgaatatctcccgctcgatgt---acatcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    ||||||||||| |||||||||||||||||| |||   | |||||||| ||||| |||||| ||| ||| |||||||||    
T  26540753 tcatcaagtgatttgaatatctcccgctcggtgtaacatatcatcaaatcatttaaccactcattgttaatcttgttg 26540830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 10 - 200
Target Start/End: Complemental strand, 17820 - 17627
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacg 106  Q
    |||||| |||||||||| ||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | |    
T  17820 acatcagcaagtgacttaaatatctcccgctcgatgtaacgtatcatcaagtcattgaaccacacatcgttgatcttgttgataacaattatttctaatg 17721  T
Q  107 gacttataagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggttatagctttggtgcaccc 200  Q
      |||||||||||||||||||||||||||||||| | |||  ||||||| ||||| |||||||||||||||||||| |||| ||||||||||||    
T  17720 agcttataagattattttactagcttattgacagagattgataactggtggacttccaacttttgttgatgttggtaatagttttggtgcaccc 17627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 9e-57; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 10 - 206
Target Start/End: Complemental strand, 12539653 - 12539455
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtacat--catcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacgg 107  Q
    |||||||||||||||||||||||||   ||||| |  ||||  ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  12539653 acatcatcaagtgacttgaatatcttatgctcggttaacatatcatcaagtcattgaaccacgcattgttgatcttgttggtaacaattctttctcacgg 12539554  T
Q  108 acttataagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatatt 206  Q
     ||||||||||| |||||||||||||||| || || |||  ||||||| ||||| |||||||||||||||||||| |||||||||||||||||| ||||    
T  12539553 gcttataagattcttttactagcttattggcaaggcttgataactggtggacttccaacttttgttgatgttggtaatagctttggtgcacccgctatt 12539455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 10 - 215
Target Start/End: Original strand, 34317562 - 34317770
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacg 106  Q
    ||||||| ||||||||||||||||||   |||| ||||    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  34317562 acatcatgaagtgacttgaatatctcttactcggtgtaacatatcatcaagtcattgaaccacacatcattgatcttgttggtaacaattctttctcatg 34317661  T
Q  107 gacttataagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatatt 206  Q
    || |||||||||| |||||||||||||||||||  | |||  ||||||| ||||| |||||||||||||||||||| ||||||||||| |||||| ||||    
T  34317662 gatttataagattcttttactagcttattgacaaagcttgataactggtggacttccaacttttgttgatgttggtaatagctttggttcacccgctatt 34317761  T
Q  207 cttggagat 215  Q
     ||| ||||    
T  34317762 gttgaagat 34317770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 35649755 - 35649831
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatctt 83  Q
    |||||||||| |||||||||||||||||||||| ||||    |||||||||||||||||| ||||||||||||||||    
T  35649755 acatcatcaaatgacttgaatatctcccgctcggtgtaacatatcatcaagtcattgaacaacacatcgttgatctt 35649831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 33453283 - 33453363
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgt----acatcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    ||||||||||||||||| ||||||||||||||| |||    | || || ||||||||| |||||||||||||||||||||||    
T  33453283 acatcatcaagtgacttaaatatctcccgctcggtgtaaacatatgatgaagtcattg-accacacatcgttgatcttgttg 33453363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 22464747 - 22464670
Alignment:
Q  13 tcatcaagtgacttgaatatctcccgctcgatgt---acatcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    ||||||||||| |||||||||||||||||| |||   | |||||||| ||||| |||||| ||| ||| |||||||||    
T  22464747 tcatcaagtgatttgaatatctcccgctcggtgtaacatatcatcaaatcatttaaccactcattgttaatcttgttg 22464670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 22483626 - 22483549
Alignment:
Q  13 tcatcaagtgacttgaatatctcccgctcgatgt---acatcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    ||||||||||| |||||||||||||||||| |||   | |||||||||||||| |||||  ||| ||| |||||||||    
T  22483626 tcatcaagtgatttgaatatctcccgctcggtgtaacatatcatcaagtcatttaaccattcattgttaatcttgttg 22483549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 34526429 - 34526352
Alignment:
Q  13 tcatcaagtgacttgaatatctcccgctcgatgt---acatcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    ||||||||||| |||||||||||||||||| |||   | |||||||| ||||| |||||| ||| ||| |||||||||    
T  34526429 tcatcaagtgatttgaatatctcccgctcggtgtaacatatcatcaaatcatttaaccactcattgttaatcttgttg 34526352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 13308796 - 13308759
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgta 47  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  13308796 acatcatcaagtgacttgaatatctctcgctcggtgta 13308759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 10 - 199
Target Start/End: Original strand, 3856971 - 3857163
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgta-cat--catcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacg 106  Q
    |||||||||| ||||||||||||||||| |||   ||| |||  |||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||    
T  3856971 acatcatcaaatgacttgaatatctcccactctgagtaacatgtcatcaagtcatttaaccacacatcgttgatcttgatggtaacaattatttctcacg 3857070  T
Q  107 gacttataagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggttatagctttggtgcacc 199  Q
    | |||||||||||||||||||||||||||||||||| |||  ||||||| ||||| ||||||||||||||||| || ||||||||||||||||    
T  3857071 ggcttataagattattttactagcttattgacagggcttgataactggtggacttccaacttttgttgatgttcgtaatagctttggtgcacc 3857163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 10 - 199
Target Start/End: Complemental strand, 51262059 - 51261867
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacg 106  Q
    ||||||||||||||||||||||||| |||||   ||||    |||||||| |||||| ||||||| |||||||||||||||||||||||||||| |||||    
T  51262059 acatcatcaagtgacttgaatatcttccgcttagtgtaacatatcatcaattcattgtaccacacttcgttgatcttgttggtaacaattctttttcacg 51261960  T
Q  107 gacttataagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggttatagctttggtgcacc 199  Q
      ||||| | ||||||||||||||||||||||||||||||  ||||||| ||||| |||||||||||||||||||| ||||||||| ||||||    
T  51261959 agcttattatattattttactagcttattgacagggtttgacaactggtggacttccaacttttgttgatgttggtaatagctttgatgcacc 51261867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 10 - 192
Target Start/End: Complemental strand, 15668053 - 15667868
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacg 106  Q
    ||||||||||||||||||||||||||||||||| | ||    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |    
T  15668053 acatcatcaagtgacttgaatatctcccgctcggtataacatatcatcaagttattgaaccacacatccttgatcttgttggtaacaattctttctcatg 15667954  T
Q  107 gacttataagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggttatagctttg 192  Q
    |  |||||||||||||||||| ||||||||| |||| |||  |||| || ||||| |||||||||||||||||||| |||| ||||    
T  15667953 ggtttataagattattttacttgcttattgatagggcttgataactagtggacttccaacttttgttgatgttggtaataggtttg 15667868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 43137207 - 43137127
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    ||||||||||||||||||||||||||||||||| ||||    |||||||||||||||||||| ||||||||||||||||||    
T  43137207 acatcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcattgaaccatacatcgttgatcttgttg 43137127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 31989109 - 31989029
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgt---acatcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    ||||||||||||||||||||||||||||||||| |||   | |||||||||||||| |||||||||| |||||||||||||    
T  31989109 acatcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 31989029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 53710478 - 53710398
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgt---acatcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    ||||||||||||||||||||||||||||||||| |||   | |||||||||||||| |||||  ||| |||||||||||||    
T  53710478 acatcatcaagtgacttgaatatctcccgctcggtgtaacagatcatcaagtcattcaaccatccattgttgatcttgttg 53710398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 24908488 - 24908568
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    ||||| ||||| ||||||||||||||| ||| | ||||    |||||||||||||| |||||||||| |||||||||||||    
T  24908488 acatcttcaagcgacttgaatatctcctgcttggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 24908568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 37381964 - 37382044
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    |||||||||| |||||||||||||||  ||||  ||||    |||||| ||||||| ||||||||||||||||||||||||    
T  37381964 acatcatcaaatgacttgaatatctcatgctcagtgtaatatatcatcgagtcatttaaccacacatcgttgatcttgttg 37382044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 30559101 - 30559308
Alignment:
Q  11 catcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacgg 107  Q
    ||||||||||||||||||||||||| |||||| ||||    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||     
T  30559101 catcatcaagtgacttgaatatctctcgctcggtgtaacatatcatcaagtcatagaaccacacatcgttgatcttgttgataacaattctttctcgcga 30559200  T
Q  108 acttataagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatattc 207  Q
     ||||||||| |||||||||||||||||||||  | |||  ||| ||| ||||| |||||||||||||||||||| |||||||||||||||||| ||||     
T  30559201 gcttataagaatattttactagcttattgacaaagcttgacaaccggtggactttcaacttttgttgatgttggtaatagctttggtgcacccgctattg 30559300  T
Q  208 ttggagat 215  Q
    ||| ||||    
T  30559301 ttgaagat 30559308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 48606707 - 48606898
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacg 106  Q
    |||| ||||||| |||||||||||||||||||| ||||    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  48606707 acattatcaagttacttgaatatctcccgctcggtgtaacatatcatcaagtcattgaaccacacatcgttgatcttgttggtagcaattctttcccacg 48606806  T
Q  107 gacttataagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggttatagctttggtgcac 198  Q
     || |||||||||||||||||||  |||||||||||||||  |||| || ||||| |||||||||||||| ||||| |||||||||||||||    
T  48606807 aacatataagattattttactagaatattgacagggtttgataactagtggacttccaacttttgttgattttggtaatagctttggtgcac 48606898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 9637201 - 9636994
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacg 106  Q
    |||||||||||||||||||||||| |||||||| ||||    ||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||    
T  9637201 acatcatcaagtgacttgaatatcacccgctcggtgtaacatatcatcaagtcattgaaccacgcatcattgatcttgttggtaacaattatttctcacg 9637102  T
Q  107 gacttataagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatatt 206  Q
     ||||||||||||| ||||||||||||||| ||||| ||   ||| ||| ||||| ||||||||||||||||| || || ||||||||||||||| ||||    
T  9637101 aacttataagatta-tttactagcttattggcagggctttataaccggtggactttcaacttttgttgatgttagtaatggctttggtgcacccgctatt 9637003  T
Q  207 cttggagat 215  Q
     ||| ||||    
T  9637002 gttgaagat 9636994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 14498977 - 14498770
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacg 106  Q
    |||||||||| |||||||||||||||||||||||||||    |||||||||||||||| ||||| |||||||||| |||||||||||| |||||||||||    
T  14498977 acatcatcaaatgacttgaatatctcccgctcgatgtaagatatcatcaagtcattga-ccacaaatcgttgatcatgttggtaacaaatctttctcacg 14498879  T
Q  107 gacttataagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatatt 206  Q
      ||||||||||||||||||||||||||||||| || |||   ||||||  |||| |||||||||||||||||| | ||||||||||| |||||| ||||    
T  14498878 agcttataagattattttactagcttattgacatggcttgatgactggtgtacttccaacttttgttgatgttgataatagctttggtacacccgctatt 14498779  T
Q  207 cttggagat 215  Q
     ||| ||||    
T  14498778 gttgaagat 14498770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 52753912 - 52754032
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacg 106  Q
    |||||||||| |||||||||||||||||| ||||||||    ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||     
T  52753912 acatcatcaaatgacttgaatatctcccgttcgatgtaacatatcatcaagtcattgaaccacacatcgttgatcatgttggtaataattctttctcaca 52754011  T
Q  107 gacttataagattattttact 127  Q
    | |||||||||||||||||||    
T  52754012 ggcttataagattattttact 52754032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 25017466 - 25017371
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttct 102  Q
    |||||||||||||| ||||||||||| |||||| ||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25017466 acatcatcaagtgatttgaatatctctcgctcggtgtaagatatcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttct 25017371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 32379950 - 32380043
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgta-catcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctc 103  Q
    |||||||||||||| |||||||||||||| | | |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32379950 acatcatcaagtgaattgaatatctcccgtttggtgtaacat-atcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctc 32380043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 40864814 - 40864909
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttct 102  Q
    |||| ||||||||||||||||||| | || ||| ||||    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40864814 acattatcaagtgacttgaatatccctcgttcggtgtaagatatcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattatttct 40864909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 17127519 - 17127439
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    ||||||||||| ||||||||||||||||||||| ||||    |||||||||||||| |||||||||| |||||||||||||    
T  17127519 acatcatcaagcgacttgaatatctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttg 17127439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 26273024 - 26273104
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgt---acatcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    ||||||||| ||||||||||||||||| |||||||||   | |||||||| ||||||||| ||||||||||||| ||||||    
T  26273024 acatcatcacgtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacacatcgttgattttgttg 26273104  T

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Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 215
Target Start/End: Complemental strand, 30054839 - 30054737
Alignment:
Q  113 taagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatattcttgga 212  Q
    ||||||||||||||||||||||||  |||| |||  ||| ||| ||||| |||||||||||||||||||| || | |||  |||||||| |||| ||| |    
T  30054839 taagattattttactagcttattggtagggcttgacaaccggtggacttccaacttttgttgatgttggtaatggttttaatgcacccgctattgttgaa 30054740  T
Q  213 gat 215  Q
    |||    
T  30054739 gat 30054737  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 35949073 - 35949110
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgta 47  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  35949073 acatcatcaagtgacttgaatatctcccgctcggtgta 35949110  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 52754030 - 52754087
Alignment:
Q  158 acttacaacttttgttgatgttggttatagctttggtgcacccgatattcttggagat 215  Q
    |||| ||||||||||| |||||| | |||||||||||||||||| |||| ||| ||||    
T  52754030 actttcaacttttgttaatgttgataatagctttggtgcacccgctattgttgaagat 52754087  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 30054896 - 30054864
Alignment:
Q  15 atcaagtgacttgaatatctcccgctcgatgta 47  Q
    |||||||||||||||||||||||||||| ||||    
T  30054896 atcaagtgacttgaatatctcccgctcggtgta 30054864  T

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Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 12180624 - 12180828
Alignment:
Q  14 catcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggact 110  Q
    ||||||||||||||||| |||||| |||| ||||    ||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||| ||    
T  12180624 catcaagtgacttgaatttctcccactcggtgtaacatatcatcaagtcattgaaccacacaatgttgatcttgttggtaacaattttttctcacgggct 12180723  T
Q  111 tataagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatattcttg 210  Q
    |||||||||||||||| ||||||||||||||| |||  ||||| | ||||| ||||||||||||||||| || ||| |||||| ||||||| |||| |||    
T  12180724 tataagattattttaccagcttattgacagggcttgataactgatggactttcaacttttgttgatgtttgtaataactttggcgcacccgctattgttg 12180823  T
Q  211 gagat 215  Q
     ||||    
T  12180824 aagat 12180828  T

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Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 11971040 - 11970832
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacg 106  Q
    ||||||||||||||||||||||||| ||||||| ||||    || |||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  11971040 acatcatcaagtgacttgaatatcttccgctcggtgtaacatatgatcaagtcattgaaccacacatcgttgatcttattggtaacaattctttctcaca 11970941  T
Q  107 gacttataagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatatt 206  Q
     |||||||| ||||||||||||| |||| ||  |||||||  |||| || |||||   ||||||| |||||||||| ||||||||| |||||||| ||||    
T  11970940 tacttataaaattattttactagattatagatggggtttgacaactagtggacttcatacttttgctgatgttggtaatagctttgctgcacccgctatt 11970841  T
Q  207 cttggagat 215  Q
     ||| ||||    
T  11970840 tttgaagat 11970832  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 24074492 - 24074412
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    |||||||||||| ||||||||||||||| |||| ||||    ||||||||||||||  ||||||||| |||||||||||||    
T  24074492 acatcatcaagtaacttgaatatctccccctcggtgtaacatatcatcaagtcattttaccacacattgttgatcttgttg 24074412  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 25599232 - 25599159
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgt-acat--catcaagtcattgaaccacacatcgttgat 80  Q
    ||||||||||||||||||| |||||||| |||||||| ||||  ||||||||||||||||| ||| ||||||||    
T  25599232 acatcatcaagtgacttgattatctcccactcgatgtaacataccatcaagtcattgaaccgcacgtcgttgat 25599159  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 3050943 - 3050894
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgt-acatcatcaagt 58  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  3050943 acatcatcaagtgacttgaatatctcccgctcggtgtaacatcatcaagt 3050894  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 8035493 - 8035535
Alignment:
Q  157 gacttacaacttttgttgatgttggttatagctttggtgcacc 199  Q
    ||||| |||||||||||||||||||| ||||||||||||||||    
T  8035493 gacttccaacttttgttgatgttggtaatagctttggtgcacc 8035535  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 1296587 - 1296557
Alignment:
Q  12 atcatcaagtgacttgaatatctcccgctcg 42  Q
    |||||||||||||||||||||||||||||||    
T  1296587 atcatcaagtgacttgaatatctcccgctcg 1296557  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 8035438 - 8035480
Alignment:
Q  85 ttggtaacaattctttctcacggacttataagattattttact 127  Q
    ||||||||||||||||||||||  | |||||||||||||||||    
T  8035438 ttggtaacaattctttctcacgagcatataagattattttact 8035480  T

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Target: scaffold0002 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 10 - 174
Target Start/End: Original strand, 435445 - 435617
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac--------atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttc 101  Q
    |||| |||||||||||||||||||| ||||||| ||||         |||||||||||||||| ||||||||  ||||||||||||||||||||| ||||    
T  435445 acataatcaagtgacttgaatatcttccgctcggtgtaacatatcatatcatcaagtcattgagccacacattattgatcttgttggtaacaattttttc 435544  T
Q  102 tcacggacttataagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttg 174  Q
    |||||  |||||||||||||||||||| |||||||||| || |||  ||||||| |||||  |||||||||||    
T  435545 tcacgagcttataagattattttactaacttattgacatgggttgacaactggtggacttcgaacttttgttg 435617  T

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Target: scaffold0007 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 259995 - 259918
Alignment:
Q  13 tcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    |||||||||||||||||||| ||||||||||||||    ||||||||||||||||||||| ||| |||||||||||||    
T  259995 tcatcaagtgacttgaatatatcccgctcgatgtaacatatcatcaagtcattgaaccactcattgttgatcttgttg 259918  T

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Target: scaffold0019 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 134949 - 135029
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgt---acatcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    ||||||||||||||||||||||||||||||||| |||   | |||||||||||||| |||||||||| ||| |||||||||    
T  134949 acatcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcatttaaccacacattgttcatcttgttg 135029  T

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Target: scaffold0015 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 214256 - 214336
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    |||||||||||||||| |||||||||| ||||| ||||    |||||||||||||| ||||||| || |||||||||||||    
T  214256 acatcatcaagtgactcgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacatattgttgatcttgttg 214336  T

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Target: scaffold0168 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 15891 - 15814
Alignment:
Q  13 tcatcaagtgacttgaatatctcccgctcgatgt---acatcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    ||||||||||| |||||||||||||||||| |||   | |||||||| ||||| |||||| ||| ||| |||||||||    
T  15891 tcatcaagtgatttgaatatctcccgctcggtgtaacatatcatcaaatcatttaaccactcattgttaatcttgttg 15814  T

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Target: scaffold0012 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 197182 - 197105
Alignment:
Q  13 tcatcaagtgacttgaatatctcccgctcgatgt---acatcatcaagtcattgaaccacacatcgttgatcttgttg 87  Q
    ||||||||||| |||||||||||||||||| |||   | |||||||| ||||| |||||| ||| ||| |||||||||    
T  197182 tcatcaagtgatttgaatatctcccgctcggtgtaacatatcatcaattcatttaaccactcattgttaatcttgttg 197105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 1476 - 1439
Alignment:
Q  10 acatcatcaagtgacttgaatatctcccgctcgatgta 47  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  1476 acatcatcaagtgatttgaatatctcccgctcggtgta 1439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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