View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5945-Insertion-1 (Length: 1018)
Name: NF5945-Insertion-1
Description: NF5945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5945-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 776; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 776; E-Value: 0
Query Start/End: Original strand, 9 - 820
Target Start/End: Original strand, 50751425 - 50752235
Alignment:
| Q |
9 |
ggaacaacctaatggcttccacttccatttctcataatccgaatctggccgtccattcttttgacaagtaactgcagtggtgagataaggacagttggaa |
108 |
Q |
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| T |
50751425 |
ggaacaacctaatggcttccacttccatttctcataatccgaatctggccgtccattcttttgacaagtaactgcagtggtgagataaggacagttggaa |
50751524 |
T |
|
| Q |
109 |
tcatagagagggtaggtttgatcaaatatccattttccaactgagaaatcacatttcttccatgaatctctttgggtttgcaccatgttgacatcttcag |
208 |
Q |
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| T |
50751525 |
tcatagagagggtaggtttgatcaaatatccattttccaactgagaaatcacatttcttccatgaatctctttgggtttgcaccatgttgacatcttcag |
50751624 |
T |
|
| Q |
209 |
tttcttccaatgcaagccaactcgacacatcctctggattgatcagtgatgatgcgcagttgaataagcctaagaaggtggtgaagaagaataaaaatga |
308 |
Q |
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| T |
50751625 |
tttcttccaatgcaagccaactcgacacatcctctggattgatcagtgatgatgcgcagttgaataagcctaagaaggtggtgaagaagaataaaaatga |
50751724 |
T |
|
| Q |
309 |
taataaatgaaggtttggttttgccattttggaagctcaaggtgagagagagcatagagtcatagttgtgaaggagtttttgtaacttagaaaggacctt |
408 |
Q |
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| T |
50751725 |
taataaatgaaggtttggttttgccattttggaagctcaaggtgagagagagcatagagtcatagttgtgaaggagtttttgtaactttgaaaggacatt |
50751824 |
T |
|
| Q |
409 |
gttgatgaaaagtgtttgatcaaggcatgacttacggtgttgtggaccatgcaaatttgttacttttactaattgctattgattgattgatctttgtacc |
508 |
Q |
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| T |
50751825 |
gttgatgaaaagtgtttgatcaaggcatgacttacggtgttgtggaccatgcaaatttgttacttttactaattgctattgattgattgatctttgtacc |
50751924 |
T |
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| Q |
509 |
aatcacatttttcttcttcttttttacaaaaattatcttcttctctctaaaacccttgttcaatattattgttatataatttctcatcaattttactatc |
608 |
Q |
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| T |
50751925 |
aatcacatttttcttcttcttttttacaaaaattatcttcttctctctaaaacccttgttcaatattattgttatataatttctcatcaattttactatc |
50752024 |
T |
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| Q |
609 |
aattcatagtgttgagacttgggtttttgttgaatccatgatctttgtgcatgatggttgctaaacacaatccaatggaagacaatatggaaatgtgttt |
708 |
Q |
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| T |
50752025 |
aattcatagtgttgagacttgggtttttgttgaatccatgatctttgtgcatgatggttgctaaacacaatccaatggaagacaatatggaaatgtgttt |
50752124 |
T |
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| Q |
709 |
gtttcatgatgaaccttttacttctgaaaatagtttaaaacatacaaatattaaaaatagttgtgatggatacggatgtacacgaagtcgaactaaaaag |
808 |
Q |
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| T |
50752125 |
gtttc-tgatcaaccttttacttttgaaaatagtttaaaacatacaaatattaaaaatagttgtgatggatacggatgaacatgaagtcgaactagaaag |
50752223 |
T |
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| Q |
809 |
tgagtggccttt |
820 |
Q |
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| T |
50752224 |
tgagtggccttt |
50752235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 818 - 1014
Target Start/End: Original strand, 50752781 - 50752981
Alignment:
| Q |
818 |
tttacaccactactaataagtttagagatttttattacttatatagaaaacaaattgatcaatctcttttttaaaacccatttgttnnnnnnntggaaaa |
917 |
Q |
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| T |
50752781 |
tttacaccactactaataagtttagagatttttattacttatatagaaaacaaattgatcaatctcttttttaaaacccatttgtcaaaaaaatggaaaa |
50752880 |
T |
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| Q |
918 |
tctctccgctc-aaccttgattccacgtgtatggtcttgg-tcaatacgcgcttgctccatctataaagcacgcacttc--tcatctatatattctctat |
1013 |
Q |
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| T |
50752881 |
tctctccactcaaaccctgattccacgtgtatggtcttggttcaatacgcgcttgctccatctataaagcacgcacttcctccatctatatattctctat |
50752980 |
T |
|
| Q |
1014 |
c |
1014 |
Q |
| |
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| T |
50752981 |
c |
50752981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 21 - 162
Target Start/End: Original strand, 19414734 - 19414875
Alignment:
| Q |
21 |
tggcttccacttccatttctcataatccgaatctggccgtccattcttttgacaagtaactgcagtggtgagataaggacagttggaatcatagagaggg |
120 |
Q |
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||||||||||||||| ||||||||||| |||||||||| |||||||| ||||||||||||||||| | |||||||| ||||| | |||||| |||||| |
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| T |
19414734 |
tggcttccacttccacttctcataatcggaatctggcctcccattcttctgacaagtaactgcagtactaagataagggcagttaggatcataaagaggg |
19414833 |
T |
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| Q |
121 |
taggtttgatcaaatatccattttccaactgagaaatcacat |
162 |
Q |
| |
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|| | || |||| | | |||||||||||| || || |||||| |
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| T |
19414834 |
taagattcatcataaacccattttccaacagaaaagtcacat |
19414875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 539 - 573
Target Start/End: Original strand, 223865 - 223899
Alignment:
| Q |
539 |
aattatcttcttctctctaaaacccttgttcaata |
573 |
Q |
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| T |
223865 |
aattatcttcttctctctaaaactcttgttcaata |
223899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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