View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5945-Insertion-2 (Length: 970)
Name: NF5945-Insertion-2
Description: NF5945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5945-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 781; Significance: 0; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 781; E-Value: 0
Query Start/End: Original strand, 9 - 949
Target Start/End: Complemental strand, 39485516 - 39484558
Alignment:
| Q |
9 |
ataaggaggatctcataaggtaatagttgatccctttgtcaaatggtaaggttaattgtaaactgtgttttgatttaattatgcgtgctcctttgtttta |
108 |
Q |
| |
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| T |
39485516 |
ataaggaggatctcataaggtaatagttgatccctttgtcaaatggtaaggttaattgtaaactgtgttttgatttaattatgcgtgctcctttgtttta |
39485417 |
T |
|
| Q |
109 |
atgttgtataccatgcttacctgcatttggcagtttcatagaacattcatttaatttagttgaaatctttgagatattttgcttaatttaatttagtttc |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39485416 |
atgttgtataccatgcttacctgcatttggcagtttcatagaacattcatttaatttagttgaaatctttgagatattttgcttaatttaatttagtttc |
39485317 |
T |
|
| Q |
209 |
aacttatattgtattatgacctattatttctgtgtactcggtgaacttgg-ccttctatattgtattaacttctactcaatggatgaaacttgtgcacac |
307 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39485316 |
aacttatattgtattatgacttattatttctgtgtactcggtgaacttggtccttctatattgtattaacttctactcaatggatgaaacttgtgcacac |
39485217 |
T |
|
| Q |
308 |
tattcttannnnnnnnnnnnnngtgtgtatactcaatttggttaagaatgaaaatgtaacagcaccaaaaaagaagcagaatcaattttgtcagtactgc |
407 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39485216 |
tattcttatttttttaatttttgtgtgtatactcaatttggttaagaatgaaaatgtaacagcaccaaaaaagaagcagaatcaattttgtcagtactgc |
39485117 |
T |
|
| Q |
408 |
ttttcttaatgatccaaaaaacttcataaagaccagcagaacttgagtacagaacatgcttaaggtgtagacagtagtaccagataaaacagcaaaccga |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39485116 |
ttttcttaatgatccaaaaaacttcataaagaccagcagaacttgagtacagaacatgcttaaggtgt---gtgtagtaccagataaaacagcaaaccga |
39485020 |
T |
|
| Q |
508 |
aacagaactacaaacttgtctcctacataaataccaggtcaaattcttactattgaatcgacattaacaatatactaaacataactacaaaaatcatagt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39485019 |
aacagaactacaaacttgtctcctacataaataccaggtcaaattcttactattgaatcgacattaacaatatactaaacataactacaaaaatgatagt |
39484920 |
T |
|
| Q |
608 |
ttcagtttttataatatacttaaatgtgtt-----------------gttggttcactttaaaattacccttatatgaaattcaatcgggcatggcttaa |
690 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39484919 |
ttcagtttttataatatacttaaatgtgttgttgagtgacagataaagttggttcactttaaaattacccttatatgaaattcaatcgggcatggcttaa |
39484820 |
T |
|
| Q |
691 |
ggcattacaaattacaggattnnnnnnntggaacgttatcactagtaggaacagctgaaatgaacagactttcagccaagtgaaattggctaatccttat |
790 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39484819 |
ggcattacaaattacaggattaaaaaaatggaacgttatcactagtaggaacagctgaaatgaacagactttcagccaagtgaaattggctaatccttat |
39484720 |
T |
|
| Q |
791 |
tatattgattagtgttgaaaattaaaccaataccctcaaaccttatttactcgaataatttaatttgatacctgattcataatataatc-atcagatgac |
889 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39484719 |
tatattgattagtgttgaaaattaaaccaataccctcaaaccttatttactcgaataatttaatttgatacctgattcataatataatcaatcagatgac |
39484620 |
T |
|
| Q |
890 |
ctaaataagtgtagg-agatccaccctctaacaaagtcttcctactcttctc-ctcattttt |
949 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39484619 |
ctaaataagtgtaggaagatccaccctctaacaaagtcttcctactcttctcactcattttt |
39484558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 206 - 467
Target Start/End: Complemental strand, 39477675 - 39477415
Alignment:
| Q |
206 |
ttcaacttatattgtattatgacctattatttctgtgtactcggtgaacttgg-ccttctatattgtattaacttctactcaatggatgaaacttgtgca |
304 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| | |||||||||||||| |
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|
| T |
39477675 |
ttcaacttttaatgtattatgacctattatttctgtgtactcggtgaacttggtccttctatattgtattaacttctaatcaacgaatgaaacttgtgca |
39477576 |
T |
|
| Q |
305 |
cactattcttannnnnnnnnnnnnngtgtgtatactcaatttggttaagaatgaaaatgtaacagcaccaaaaaagaagcagaatcaattttgtcagtac |
404 |
Q |
| |
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|| |||||||| || |||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
39477575 |
cattattcttatttttaattttt--gtatgtataatcaatttggttaagaatgaaaatgtaacagcaacaaaaatgaagcagaatcaattttgtcagtac |
39477478 |
T |
|
| Q |
405 |
tgcttttcttaatgatccaaaaaacttcataaagaccagcagaacttgagtacagaacatgct |
467 |
Q |
| |
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|||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||| |
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|
| T |
39477477 |
tgcttttcttaatgattcaaaaaacctcataaagaccaacagaacttgagtacagaacatgct |
39477415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 494 - 834
Target Start/End: Complemental strand, 39477327 - 39476957
Alignment:
| Q |
494 |
aaacagcaaaccgaaacagaactacaaacttgtctcctacataaataccaggtcaaattcttactattgaat---cgacattaacaatatactaaacata |
590 |
Q |
| |
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||||||||| || ||||||||||||||||||| ||||||||||||||| |||||||| | ||||||||||| ||||||| |||||||||| | |||| |
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| T |
39477327 |
aaacagcaatccaaaacagaactacaaacttgcctcctacataaatacaaggtcaaacttttactattgaacagacgacattcacaatatactcatcata |
39477228 |
T |
|
| Q |
591 |
actacaaaaatcatagtttcagtttttataatatacttaaatgtgtt------------------gttggttcactttaaaattacccttatatgaaatt |
672 |
Q |
| |
|
|||| |||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39477227 |
actataaaaatgatagtttcaatttttataatatacttaaatgtgtttttgagtgacagatcaaagttggttcactttaaaattacccttatatgaaatt |
39477128 |
T |
|
| Q |
673 |
caatcgggcatggcttaaggcattacaaattacaggatt---nnnnnnntggaacgttatcactagtaggaacagctgaaatgaac-agactttcagcca |
768 |
Q |
| |
|
||||||||||||| ||||||| ||||| |||||| || | || || |||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
39477127 |
caatcgggcatggtttaaggccttacatattacaagagtgacgacacaatgaaatgttatcactagtaggaacagctaaaatgaacaagactttcagcca |
39477028 |
T |
|
| Q |
769 |
agtgaaattggctaatcct-----tattatattgattagtgttgaaaattaaaccaataccctcaaacctt |
834 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||| |
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|
| T |
39477027 |
agtgaaattggctaatccttgttatattatatagattagtgttgaaaattaaaccaataccctccaacctt |
39476957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 845 - 937
Target Start/End: Complemental strand, 39487865 - 39487771
Alignment:
| Q |
845 |
ataatttaatttgatacctgattcataatataatc-atcagatgacctaaataagtgtagg-agatccaccctctaacaaagtcttcctactctt |
937 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
39487865 |
ataatttaatttgatacctgattcataatataatcaatcaaatgacctaaataagtgtaggaagatccaccctctaacaaagtcttcttactctt |
39487771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 817 - 937
Target Start/End: Complemental strand, 39476940 - 39476818
Alignment:
| Q |
817 |
ccaataccctcaaaccttatttactcgaataatttaatttgatacctgattcataatataatc-atcagatgacctaaataagtgt-aggagatccaccc |
914 |
Q |
| |
|
||||||||||| |||||||| |||| | |||||||||||| |||||| || |||||||||||| |||| | ||||||||||| ||| || ||||||||| |
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| T |
39476940 |
ccaataccctccaaccttatatactaggataatttaatttcatacctcatacataatataatcaatcaaacgacctaaataattgtaagaagatccacct |
39476841 |
T |
|
| Q |
915 |
tctaacaaagtcttcctactctt |
937 |
Q |
| |
|
||||||||||||||| ||||||| |
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|
| T |
39476840 |
tctaacaaagtcttcttactctt |
39476818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 847 - 929
Target Start/End: Complemental strand, 39456026 - 39455942
Alignment:
| Q |
847 |
aatttaatttgatacctgattcataatataatc-atcagatgacctaaataagt-gtaggagatccaccctctaacaaagtcttc |
929 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || | | ||||||||||||| | || |||||| |||||||||||||||||| |
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| T |
39456026 |
aatttaatttgatacctggttcataatataatcaattaaacgacctaaataagtggaagaagatcctccctctaacaaagtcttc |
39455942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 845 - 934
Target Start/End: Original strand, 39457068 - 39457159
Alignment:
| Q |
845 |
ataatttaatttgatacctgattcataatataatc-atcagatgacctaaataagtgtagg-agatccaccctctaacaaagtcttcctact |
934 |
Q |
| |
|
|||||||| ||||||||||||| | |||||||||| |||| | |||||||||||||||||| |||||| || ||||||| ||||||| |||| |
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|
| T |
39457068 |
ataatttattttgatacctgatacctaatataatcgatcaaacgacctaaataagtgtaggaagatcctccatctaacagagtcttcttact |
39457159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 259 - 308
Target Start/End: Original strand, 39456602 - 39456651
Alignment:
| Q |
259 |
ccttctatattgtattaacttctactcaatggatgaaacttgtgcacact |
308 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| |||||||||||| |
|
|
| T |
39456602 |
ccttctatattgtattaacttctagtcaatgaatgaagcttgtgcacact |
39456651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 259 - 308
Target Start/End: Complemental strand, 39488616 - 39488567
Alignment:
| Q |
259 |
ccttctatattgtattaacttctactcaatggatgaaacttgtgcacact |
308 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||| |||||||||||| |
|
|
| T |
39488616 |
ccttctatattgtattaatttctactcaatgaatgaagcttgtgcacact |
39488567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 851 - 933
Target Start/End: Original strand, 43311309 - 43311393
Alignment:
| Q |
851 |
taatttgatacctgattcataatataatca-tcagatgacctaaataagtgtagga-gatccaccctctaacaaagtcttcctac |
933 |
Q |
| |
|
|||||| |||| |||||||||||||||||| ||| | |||||| |||||||||| ||||||||||||||||| |||||||||| |
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|
| T |
43311309 |
taatttcatacatgattcataatataatcaatcaaactacctaagcaagtgtaggaagatccaccctctaacaatgtcttcctac |
43311393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 869 - 934
Target Start/End: Original strand, 39463354 - 39463421
Alignment:
| Q |
869 |
ataatataatca-tcagatgacctaaataagtgtagga-gatccaccctctaacaaagtcttcctact |
934 |
Q |
| |
|
|||||||||||| ||| | ||||||||||||||||||| ||||| |||||||||||||||||| |||| |
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|
| T |
39463354 |
ataatataatcaatcaaacgacctaaataagtgtaggaagatcctccctctaacaaagtcttcttact |
39463421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 259 - 306
Target Start/End: Original strand, 39452464 - 39452511
Alignment:
| Q |
259 |
ccttctatattgtattaacttctactcaatggatgaaacttgtgcaca |
306 |
Q |
| |
|
|||| ||||||||| |||||||||||||||| ||||| |||||||||| |
|
|
| T |
39452464 |
ccttatatattgtaataacttctactcaatgaatgaagcttgtgcaca |
39452511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 858 - 934
Target Start/End: Complemental strand, 39473417 - 39473339
Alignment:
| Q |
858 |
atacctgattcataatataatcatcagat-gacctaaataagtgt-aggagatccaccctctaacaaagtcttcctact |
934 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||||| | || || ||||||||| ||||||||||||||| |||| |
|
|
| T |
39473417 |
atacctgattcataatataatcaaccaatcgacctaaatatgcgtaagaagatccaccttctaacaaagtcttcttact |
39473339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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