View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5945-Insertion-4 (Length: 898)

Name: NF5945-Insertion-4
Description: NF5945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5945-Insertion-4
NF5945-Insertion-4
[»] chr5 (13 HSPs)
chr5 (9-287)||(42784188-42784465)
chr5 (600-898)||(5519953-5520262)
chr5 (740-894)||(42785042-42785198)
chr5 (727-898)||(27198789-27198961)
chr5 (752-898)||(15598153-15598301)
chr5 (367-442)||(5520495-5520567)
chr5 (806-869)||(27198699-27198762)
chr5 (820-869)||(15598344-15598393)
chr5 (806-869)||(5519862-5519924)
chr5 (144-192)||(5520742-5520790)
chr5 (356-427)||(15597676-15597747)
chr5 (806-869)||(42785231-42785293)
chr5 (159-202)||(27199610-27199653)
[»] chr1 (29 HSPs)
chr1 (9-287)||(47051751-47052029)
chr1 (9-253)||(19657721-19657967)
chr1 (599-869)||(17479269-17479540)
chr1 (471-754)||(17479723-17479999)
chr1 (600-898)||(16100148-16100457)
chr1 (740-898)||(17653875-17654035)
chr1 (740-898)||(14659617-14659777)
chr1 (740-898)||(29289508-29289668)
chr1 (766-898)||(47050996-47051130)
chr1 (744-898)||(10991655-10991811)
chr1 (740-898)||(14649827-14649986)
chr1 (356-477)||(47051558-47051682)
chr1 (8-202)||(14648962-14649157)
chr1 (8-202)||(14658752-14658947)
chr1 (356-442)||(16099788-16099873)
chr1 (462-535)||(17479537-17479610)
chr1 (806-869)||(17479108-17479171)
chr1 (806-869)||(14650015-14650077)
chr1 (806-869)||(14659806-14659868)
chr1 (806-869)||(16100486-16100548)
chr1 (806-869)||(17653784-17653846)
chr1 (806-869)||(47050905-47050967)
chr1 (471-573)||(47051320-47051421)
chr1 (356-427)||(17654449-17654519)
chr1 (806-869)||(29289418-29289479)
chr1 (818-869)||(10991563-10991614)
chr1 (526-573)||(16100082-16100129)
chr1 (8-54)||(34899532-34899578)
chr1 (630-695)||(17654090-17654155)
[»] chr8 (17 HSPs)
chr8 (9-287)||(4707704-4707981)
chr8 (740-896)||(15924490-15924648)
chr8 (740-898)||(26917769-26917929)
chr8 (740-897)||(18981973-18982132)
chr8 (623-888)||(26340968-26341246)
chr8 (740-894)||(4707135-4707291)
chr8 (14-202)||(15998366-15998553)
chr8 (118-202)||(26918577-26918659)
chr8 (806-869)||(4707040-4707102)
chr8 (806-869)||(18982162-18982224)
chr8 (806-869)||(15924679-15924741)
chr8 (806-869)||(26917677-26917740)
chr8 (774-898)||(15256924-15257048)
chr8 (806-859)||(26340875-26340928)
chr8 (356-427)||(4707565-4707635)
chr8 (356-426)||(26341511-26341579)
chr8 (623-695)||(26917984-26918057)
[»] chr2 (38 HSPs)
chr2 (9-287)||(809897-810175)
chr2 (9-274)||(27560869-27561136)
chr2 (9-274)||(37457310-37457577)
chr2 (742-898)||(9311783-9311941)
chr2 (740-898)||(44323631-44323791)
chr2 (740-898)||(10415399-10415559)
chr2 (740-894)||(809154-809310)
chr2 (748-898)||(45331561-45331713)
chr2 (740-898)||(39155139-39155299)
chr2 (710-898)||(4405425-4405616)
chr2 (765-898)||(31713521-31713656)
chr2 (766-898)||(2587734-2587868)
chr2 (356-477)||(39155672-39155796)
chr2 (740-898)||(4696178-4696338)
chr2 (740-898)||(15001204-15001359)
chr2 (806-869)||(10415588-10415651)
chr2 (144-202)||(44314709-44314767)
chr2 (144-202)||(44322888-44322946)
chr2 (806-869)||(809059-809121)
chr2 (806-869)||(2587897-2587959)
chr2 (806-869)||(4405645-4405708)
chr2 (806-869)||(31713685-31713747)
chr2 (806-869)||(39155048-39155110)
chr2 (806-869)||(44323820-44323882)
chr2 (812-869)||(9311426-9311484)
chr2 (10-78)||(45330446-45330514)
chr2 (817-869)||(9311559-9311612)
chr2 (806-867)||(26894820-26894881)
chr2 (806-867)||(26900259-26900320)
chr2 (817-869)||(4696377-4696429)
chr2 (356-427)||(809756-809826)
chr2 (806-869)||(45331742-45331804)
chr2 (609-693)||(45331275-45331360)
chr2 (10-78)||(31712763-31712831)
chr2 (10-78)||(39156280-39156348)
chr2 (25-71)||(10414571-10414617)
chr2 (356-427)||(15001783-15001856)
chr2 (766-895)||(20024181-20024309)
[»] chr4 (26 HSPs)
chr4 (9-274)||(5742764-5743031)
chr4 (609-898)||(11513239-11513529)
chr4 (740-898)||(18694648-18694806)
chr4 (743-898)||(51533219-51533374)
chr4 (740-898)||(4763976-4764136)
chr4 (740-898)||(27561638-27561798)
chr4 (742-898)||(27734202-27734358)
chr4 (356-477)||(27562171-27562295)
chr4 (367-493)||(54352822-54352952)
chr4 (622-898)||(54352327-54352605)
chr4 (806-869)||(4763885-4763947)
chr4 (806-869)||(5358993-5359056)
chr4 (811-869)||(27734110-27734168)
chr4 (806-869)||(27561547-27561609)
chr4 (356-427)||(4764567-4764637)
chr4 (806-869)||(18694558-18694620)
chr4 (817-869)||(54352237-54352288)
chr4 (740-885)||(5359099-5359248)
chr4 (806-869)||(11513146-11513209)
chr4 (806-869)||(51533402-51533464)
chr4 (623-695)||(4764191-4764264)
chr4 (623-695)||(18694861-18694934)
chr4 (356-427)||(18695243-18695313)
chr4 (806-869)||(27733949-27734012)
chr4 (526-573)||(54352623-54352670)
chr4 (623-695)||(27734414-27734487)
[»] chr3 (25 HSPs)
chr3 (9-202)||(5735585-5735778)
chr3 (9-202)||(5772697-5772890)
chr3 (600-898)||(5706020-5706327)
chr3 (740-898)||(6911813-6911973)
chr3 (740-898)||(28103368-28103528)
chr3 (766-898)||(19434585-19434719)
chr3 (740-894)||(28058936-28059092)
chr3 (740-894)||(28069361-28069517)
chr3 (370-477)||(19434044-19434154)
chr3 (766-898)||(9436659-9436793)
chr3 (806-869)||(19434748-19434810)
chr3 (806-869)||(28058841-28058903)
chr3 (806-869)||(28069266-28069328)
chr3 (806-869)||(6911722-6911784)
chr3 (356-427)||(6912410-6912480)
chr3 (767-869)||(11200272-11200375)
chr3 (471-573)||(19434291-19434392)
chr3 (623-695)||(6912028-6912101)
chr3 (471-519)||(5706383-5706431)
chr3 (806-869)||(5705930-5705992)
chr3 (806-869)||(28103557-28103619)
chr3 (471-573)||(11199970-11200071)
chr3 (11-63)||(7688223-7688276)
chr3 (605-695)||(11200098-11200190)
chr3 (812-861)||(17958738-17958787)
[»] scaffold0713 (7 HSPs)
scaffold0713 (740-898)||(341-501)
scaffold0713 (8-202)||(3792-3988)
scaffold0713 (806-869)||(530-592)
scaffold0713 (356-445)||(8-93)
scaffold0713 (356-445)||(4144-4229)
scaffold0713 (630-695)||(221-286)
scaffold0713 (630-695)||(4357-4422)
[»] chr6 (40 HSPs)
chr6 (740-898)||(9814366-9814526)
chr6 (740-898)||(22013523-22013683)
chr6 (740-898)||(25478744-25478904)
chr6 (740-898)||(27526793-27526953)
chr6 (741-898)||(27650597-27650763)
chr6 (740-898)||(33062575-33062735)
chr6 (765-898)||(17355060-17355195)
chr6 (765-898)||(27683674-27683809)
chr6 (765-898)||(27690995-27691128)
chr6 (766-898)||(13142627-13142761)
chr6 (8-202)||(27525923-27526119)
chr6 (727-898)||(28040240-28040413)
chr6 (817-898)||(33055270-33055352)
chr6 (806-869)||(9814555-9814618)
chr6 (806-869)||(17355224-17355287)
chr6 (144-202)||(22012782-22012840)
chr6 (10-78)||(13143638-13143706)
chr6 (806-869)||(22013712-22013774)
chr6 (806-869)||(27526982-27527044)
chr6 (806-869)||(27683838-27683900)
chr6 (806-869)||(27691157-27691219)
chr6 (10-78)||(17354296-17354364)
chr6 (806-862)||(30129967-30130023)
chr6 (806-869)||(6952020-6952083)
chr6 (806-869)||(28040442-28040504)
chr6 (806-869)||(33055381-33055443)
chr6 (806-869)||(33062764-33062826)
chr6 (365-445)||(33062078-33062154)
chr6 (808-869)||(15970765-15970826)
chr6 (817-869)||(13142536-13142588)
chr6 (833-896)||(15970852-15970916)
chr6 (356-427)||(9821699-9821769)
chr6 (740-787)||(9822206-9822253)
chr6 (144-202)||(25479526-25479584)
chr6 (806-869)||(25478649-25478715)
chr6 (10-78)||(27682911-27682979)
chr6 (10-78)||(27690232-27690300)
chr6 (10-78)||(30229985-30230053)
chr6 (356-427)||(25479341-25479411)
chr6 (623-695)||(33062447-33062520)
[»] scaffold0406 (3 HSPs)
scaffold0406 (740-898)||(3207-3367)
scaffold0406 (806-869)||(3396-3458)
scaffold0406 (356-427)||(2694-2764)
[»] scaffold0007 (3 HSPs)
scaffold0007 (767-898)||(60063-60196)
scaffold0007 (817-869)||(60236-60288)
scaffold0007 (811-869)||(60393-60451)
[»] chr7 (12 HSPs)
chr7 (742-898)||(22010790-22010946)
chr7 (740-898)||(28803113-28803273)
chr7 (767-898)||(44060509-44060642)
chr7 (741-898)||(36264869-36265028)
chr7 (118-202)||(34378185-34378269)
chr7 (806-869)||(44060417-44060480)
chr7 (144-202)||(28802405-28802463)
chr7 (806-869)||(36264778-36264840)
chr7 (15-71)||(6023844-6023900)
chr7 (806-869)||(36264620-36264683)
chr7 (817-869)||(28803313-28803364)
chr7 (356-424)||(28802619-28802687)
[»] scaffold0438 (6 HSPs)
scaffold0438 (623-888)||(8148-8426)
scaffold0438 (623-888)||(11129-11407)
scaffold0438 (806-869)||(8045-8108)
scaffold0438 (806-859)||(11036-11089)
scaffold0438 (365-427)||(8689-8750)
scaffold0438 (356-426)||(11672-11740)
[»] scaffold0002 (4 HSPs)
scaffold0002 (768-898)||(413381-413513)
scaffold0002 (767-898)||(424763-424896)
scaffold0002 (813-898)||(407331-407417)
scaffold0002 (633-695)||(413580-413640)
[»] scaffold2168 (1 HSPs)
scaffold2168 (144-202)||(10-68)
[»] scaffold0036 (1 HSPs)
scaffold0036 (85-195)||(32893-33002)
[»] scaffold0654 (2 HSPs)
scaffold0654 (630-695)||(4383-4448)
scaffold0654 (630-695)||(5737-5802)
[»] scaffold0014 (1 HSPs)
scaffold0014 (631-693)||(115689-115751)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 287
Target Start/End: Original strand, 42784188 - 42784465
Alignment:
Q  9 agttgctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatgaagattcgtttagaaattattttgtaggtta 108  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42784188 agttgctcattgagactctttgaggtatatttatcaacttacaattcaattagtgtttatttacacatgaagattcgtt-agaaattattttgtaggtta 42784286  T
Q  109 gaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagattcggtg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42784287 gaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagattcggtg 42784386  T
Q  209 gaaattgctccggtggtcattcagaaaggcatcacaaggaattgagttctttcgtcatatctgtgagttgatgacgatc 287  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42784387 gaaattactccggtggtcattcagaaaggcatcactaggaattgagttctttcgtcatatctgtgagttgatgacgatc 42784465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 600 - 898
Target Start/End: Complemental strand, 5520262 - 5519953
Alignment:
Q  600 ttggcatttatatgtactcgaagtggatttgatttggatttacttatgactacaagtggtagaatttcaattgagtttttatggtacatattttgatccg 699  Q
    |||| ||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||  || ||| ||||||      
T  5520262 ttggtattaatatgtacgcgatgtggatttgatttggatttacttatgactacaagtggtagattttcgattgagttttgatga-acgtatgttgatcta 5520164  T
Q  700 a-------tatgttgaaaaatatggtttgtgagatgt--tttgagaatttg-ttttgaaaattatggttttaacgatgacgacctaggtgcacctagtat 789  Q
    |       |||||||  |||||||||||  || ||||  ||| |||||  | |||||||||||| |||| ||| || |||||||||||||||||||||||    
T  5520163 agttttgttatgttgcgaaatatggttttagacatgtgttttaagaatgaggttttgaaaattacggttataatgacgacgacctaggtgcacctagtat 5520064  T
Q  790 gtgattttgatgagggagagtta-tccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatc-atgagatgtaaactcccta 887  Q
    ||||||| ||| ||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||| |||    
T  5520063 gtgatttcgattaggtagagttactccattagatggagccgcccctatggaaaggccaccattaggaggagagggctatcaatgagaggtaaactctcta 5519964  T
Q  888 attgaaaatgt 898  Q
    |||||||||||    
T  5519963 attgaaaatgt 5519953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 740 - 894
Target Start/End: Original strand, 42785042 - 42785198
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcc-attagatggagccgcctctatgg 838  Q
    ||||||||| |||| |||| ||| || ||||||||||||||||||||||||||||||  || ||| ||||||| || |||||||||||||||| ||||||    
T  42785042 tgttttgaagattacggttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagagttaccccattagatggagccgcccctatgg 42785141  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaa 894  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||  ||||||||||    
T  42785142 aaaggccgccattaggaggagagggctatcaatgagaggtaaactgtctaattgaaa 42785198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 727 - 898
Target Start/End: Complemental strand, 27198961 - 27198789
Alignment:
Q  727 tgttttgagaatttgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcca-ttagatgga 825  Q
    ||||||||||||||  |||||||||   |||| ||| || ||||||||||||||||||||||||||||||  || ||| | ||||| ||  ||||||| |    
T  27198961 tgttttgagaattttgtttgaaaatcc-ggttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtatagttaccccgttagatgaa 27198863  T
Q  826 gccgcctctatggaaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    |||||| |||||||||| ||  ||||||||||||||||||||| |||||| || ||||||||| ||||||||||    
T  27198862 gccgcccctatggaaagaccgtcattaggaggagagggctatcaatgagaggtgaactccctagttgaaaatgt 27198789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 752 - 898
Target Start/End: Original strand, 15598153 - 15598301
Alignment:
Q  752 tatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagtta-tccattagatggagccgcctctatggaaaggccaccat 850  Q
    ||||||| ||| || |||||||||||||||||||||| |||||||  |  ||| ||||||| ||| ||||||| ||||||| | |||||||| |  ||||    
T  15598153 tatggttataatgacgacgacctaggtgcacctagtacgtgatttcaaataggaagagttactccgttagatgtagccgccccaatggaaagactgccat 15598252  T
Q  851 taggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    |||||||||||||||||| |||||| ||||||||||| ||| |||||||    
T  15598253 taggaggagagggctatcaatgagaggtaaactccctgattaaaaatgt 15598301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 367 - 442
Target Start/End: Complemental strand, 5520567 - 5520495
Alignment:
Q  367 acaccctttggacatttttcttctcattgatacttatgtttaaagtcatcgatattattattatggtctctatttg 442  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  5520567 acaccctttgaacatttttcctctcattgatacttatgtttaaagtcatcgatatta---ttatggtctctatttg 5520495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 806 - 869
Target Start/End: Complemental strand, 27198762 - 27198699
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  27198762 agagctatccgttagatggagccgcccctatggaaagggcaccattaggaggagagggctatca 27198699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 820 - 869
Target Start/End: Original strand, 15598344 - 15598393
Alignment:
Q  820 gatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15598344 gatggagccgcccctatggaaaggccaccattaggaggagagggctatca 15598393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 806 - 869
Target Start/End: Complemental strand, 5519924 - 5519862
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  5519924 agagctatccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatca 5519862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 5520790 - 5520742
Alignment:
Q  144 gttagagaagtggtagaatgagtttctaattcatgagaaaatattattg 192  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  5520790 gttagagaagtagtagaatgattttctaattcatgagaaaatattattg 5520742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 356 - 427
Target Start/End: Original strand, 15597676 - 15597747
Alignment:
Q  356 aaatgggacacacaccctttggacatttttcttctcattgatacttatgtttaaagtcatcgatattattat 427  Q
    |||||||  |||||||||||| | ||||||| ||||||||||||||||||| | |||||| |||||||||||    
T  15597676 aaatggggaacacaccctttgaagatttttcctctcattgatacttatgttaacagtcattgatattattat 15597747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 806 - 869
Target Start/End: Original strand, 42785231 - 42785293
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||| ||||||    
T  42785231 agagctatccgttagatggagccgcccc-atggaaaggccaccattaggaggagaggactatca 42785293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 27199653 - 27199610
Alignment:
Q  159 gaatgagtttctaattcatgagaaaatattattgatgttcagat 202  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||    
T  27199653 gaatgagtttctaattcatgagagaatattattgatgctcagat 27199610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 287
Target Start/End: Complemental strand, 47052029 - 47051751
Alignment:
Q  9 agttgctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatgaagattcgtttagaaattattttgtaggtta 108  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  47052029 agttgctcattgagactctttgaggtatatttatcaacttacaattcaattagtgtttatttacacatgatgattcgtttagaaattattttgtaggtta 47051930  T
Q  109 gaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagattcggtg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  47051929 gaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcaaattcggtg 47051830  T
Q  209 gaaattgctccggtggtcattcagaaaggcatcacaaggaattgagttctttcgtcatatctgtgagttgatgacgatc 287  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  47051829 gaaattgctccggtggtcattcagaaaggcatcactaggaattgagttctttcgtcatatctgtgagttgataacgatc 47051751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 19657967 - 19657721
Alignment:
Q  9 agttgctcattgagactctttgaagtatatttatcaacttacaattc--aattagtgtttatttacacatgaagattcgtttagaaattattttgtaggt 106  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19657967 agttgctcattgagactctttgaggtatatttatcgacttacaattctcaattagtgtttatttacacatgaagattcgtttagaaattattttgtaggt 19657868  T
Q  107 tagaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagattcgg 206  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19657867 tagaatggataatgtagggattttatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagattcgg 19657768  T
Q  207 tggaaattgctccggtggtcattcagaaaggcatcacaaggaattga 253  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||    
T  19657767 tggaaattgctccggtggtcattcggaaaggcatcactaggaattga 19657721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 599 - 869
Target Start/End: Complemental strand, 17479540 - 17479269
Alignment:
Q  599 tttggcatttatatgtactcgaagtggatttgatttggatttacttatgactacaagtggtagaatttcaattgagtttttatggtacatattttgatcc 698  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  17479540 tttggtatttatatgtactcgatgtggatttgatttggatttacttgtgactacaagtggtagattttcaattgagttttgatggtacatattttgatcc 17479441  T
Q  699 gatatgttgaaaaatatggtttgtgagatgttttgagaatttgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttg 798  Q
    ||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||      
T  17479440 gatatgttggaaaatatggtttgtaagacgttttgagaatttgttttgaaaattatggttttagtgacgacgacctaggtgcacctagtatgtgatttca 17479341  T
Q  799 atgagggagagtta-tccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    || ||| | |||||  || ||||||||||||||| | ||||||| |||||||||||||||||||||||||||    
T  17479340 attaggtatagttaccccgttagatggagccgccccaatggaaaagccaccattaggaggagagggctatca 17479269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 471 - 754
Target Start/End: Original strand, 17479723 - 17479999
Alignment:
Q  471 aaatagagatttaattgcatatattttgtacactagttttgatatgttcctaaaaactagttttgcctagttttgatattgtctaaagcatggttttgga 570  Q
    |||| ||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||  |||||||||||||||||||    
T  17479723 aaatggagatttgattgcatatattttgtgcactagttttgatatgttcctaaaatctagttttgactagttttgatatgttctaaagcatggttttgga 17479822  T
Q  571 attatgnnnnnnnnnnnnnattttaaaatttggcatttatatgtactcgaagtggatttgatttggatttacttatgactacaagtggtagaatttcaat 670  Q
    ||| ||             |||||       || |||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||    
T  17479823 attgtgtttttttccgaagatttt-------ggtatttatatgtactcgatgtggattttatttggatttacttttgactacaagtggtagattttcaat 17479915  T
Q  671 tgagtttttatggtacatattttgatccgatatgttgaaaaatatggtttgtgagatgttttgagaatttgttttgaaaattat 754  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||    
T  17479916 tgagttttgatggtacatattttgatccgatatgttggaaaatatggtttgtaagacgttttgagaatttgttttgaaaattat 17479999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 600 - 898
Target Start/End: Original strand, 16100148 - 16100457
Alignment:
Q  600 ttggcatttatatgtactcgaagtggatttgatttggatttacttatgactacaagtggtagaatttcaattgagtttttatggtacatattttga---- 695  Q
    |||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| || | |  ||| ||||        
T  16100148 ttggtattaatatgtactcgatgtggatttgatttggatttacttatgactacaagtggtagattttcgattgagttttgat-gaatgtatgttgatata 16100246  T
Q  696 ---tccgatatgttgaaaaatatggtttgtgaga--tgttttgagaat-ttgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtat 789  Q
       | || ||||||| ||||||||||||  || |  |||||| |||||   ||||||||||||| || | ||| || |||||||||||||||||||||||    
T  16100247 agtttcgttatgttgcaaaatatggttttagacatgtgttttaagaatgaggttttgaaaattacggctataatgacgacgacctaggtgcacctagtat 16100346  T
Q  790 gtgattttgatgagggagagtta-tccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatc-atgagatgtaaactcccta 887  Q
    |||||||  || ||| ||| |||  || || |||||||||||| ||||||||||||  |||||||||||||||||||||| |||||| ||||||||||||    
T  16100347 gtgatttcaatcaggtagaattaccccgttggatggagccgcccctatggaaaggctgccattaggaggagagggctatcaatgagaggtaaactcccta 16100446  T
Q  888 attgaaaatgt 898  Q
    |||||||||||    
T  16100447 attgaaaatgt 16100457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 740 - 898
Target Start/End: Complemental strand, 17654035 - 17653875
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcc-attagatggagccgcctctatgg 838  Q
    ||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||  || ||| ||| ||| || |||||||||||||||| ||||||    
T  17654035 tgttttgaaaattatggttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagaattaccccattagatggagccgcccctatgg 17653936  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  17653935 aaaggccgccattaggaggagagggctatcaatgagaggtaaactccctaattgaaaatgt 17653875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 740 - 898
Target Start/End: Original strand, 14659617 - 14659777
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcca-ttagatggagccgcctctatgg 838  Q
    |||||||||||||| |||| ||| || ||||||||||||||||||||||||||||||  || ||| ||| ||| ||  ||||||||||||||| ||||||    
T  14659617 tgttttgaaaattacggttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagaattaccccgttagatggagccgcccctatgg 14659716  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  14659717 aaaggccgccattaggaggagagggctatcaatgagaggtaaactccctaattgaaaatgt 14659777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 740 - 898
Target Start/End: Complemental strand, 29289668 - 29289508
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcca-ttagatggagccgcctctatgg 838  Q
    |||||||||||||| ||||  || || ||||||||||||||||||||||||||||||  || ||| ||| ||| ||  ||||||||||||||| ||||||    
T  29289668 tgttttgaaaattacggttacaatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagaattaccccgttagatggagccgcccctatgg 29289569  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  29289568 aaaggccgccattaggaggagagggctatcaatgagaggtaaactccctaattgaaaatgt 29289508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 766 - 898
Target Start/End: Complemental strand, 47051130 - 47050996
Alignment:
Q  766 tgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcca-ttagatggagccgcctctatggaaaggccaccattaggaggagagggc 864  Q
    |||||||||||||||||||||||||||||||| || ||| ||| ||| ||  ||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  47051130 tgacgacctaggtgcacctagtatgtgattttaattaggtagaattaccccgttagatggagccgcccctatggaaaggcctccattaggaggagagggc 47051031  T
Q  865 tatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    |||| |||||| |||||||||||||||||||||||    
T  47051030 tatcaatgagaggtaaactccctaattgaaaatgt 47050996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 744 - 898
Target Start/End: Complemental strand, 10991811 - 10991655
Alignment:
Q  744 ttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagtta-tccattagatggagccgcctctatggaaag 842  Q
    |||||||||| || | ||| || ||||||||| |||||||||||||||||| |   | ||| ||||||| ||| |||| |||||||||| ||||||||||    
T  10991811 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 10991712  T
Q  843 gccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10991711 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgt 10991655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 740 - 898
Target Start/End: Original strand, 14649827 - 14649986
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcca-ttagatggagccgcctctatgg 838  Q
    |||||||||||||| |||| ||| || ||||||||||||||||||||||||||||||  || ||| ||| ||| ||  ||||||||||||||| ||||||    
T  14649827 tgttttgaaaattacggttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagaattaccccgttagatggagccgcccctatgg 14649926  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||| |||||||||||||||    
T  14649927 aaaggccgccattaggaggagagggctatcaatgagaggtaaact-cctaattgaaaatgt 14649986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 356 - 477
Target Start/End: Complemental strand, 47051682 - 47051558
Alignment:
Q  356 aaatgggacacacaccctttggacatttttcttctcattgatacttatgtttaaagtcatcgatattattattatggtctctatttgaa------tatga 449  Q
    |||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||      |||||    
T  47051682 aaatggggaacacaccctttgaacatttttcttctcattgatacttatgtttaaagtcatcgatatta---ttatggtctctatttgaatttatctatga 47051586  T
Q  450 cttattgagcaaatggtttgaaaataga 477  Q
    ||||||||||||||| ||||||||||||    
T  47051585 cttattgagcaaatgatttgaaaataga 47051558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 14648962 - 14649157
Alignment:
Q  8 aagttgctcattgagact-ctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatgaagattcgtttagaaattattttgt-agg 105  Q
    |||||| ||||||||||| ||| || |||||||||||||||||||| ||||||||||  |||||| ||||||  | | ||| |||||||| ||| | ||     
T  14648962 aagttgttcattgagacttcttcgaggtatatttatcaacttacaactcaattagtgcatatttagacatgattagttgtt-agaaattaatttttgaga 14649060  T
Q  106 ttagaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagat 202  Q
    ||||| | |||  | | |||| ||  ||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  14649061 ttagattagattgtttggggaatttgtggttaactatagttagagaagtagtagaatgagtttctaattcatgagagaatattattgatgttcagat 14649157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 14658752 - 14658947
Alignment:
Q  8 aagttgctcattgagact-ctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatgaagattcgtttagaaattattttgt-agg 105  Q
    |||||| ||||||||||| ||| || |||||||||||||||||||| ||||||||||  |||||| ||||||  | | ||| |||||||| ||| | ||     
T  14658752 aagttgttcattgagacttcttcgaggtatatttatcaacttacaactcaattagtgcatatttagacatgattagttgtt-agaaattaatttttgaga 14658850  T
Q  106 ttagaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagat 202  Q
    ||||| | |||  | | |||| ||  ||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  14658851 ttagattagattgtttggggaatttgtggttaactatagttagagaagtagtagaatgagtttctaattcatgagagaatattattgatgttcagat 14658947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 356 - 442
Target Start/End: Original strand, 16099788 - 16099873
Alignment:
Q  356 aaatgggacacacaccctttggacatttt--tcttctcattgatacttatgtttaaagtcatcgatattattattatggtctctatttg 442  Q
    |||||||  |||||||||||| |||||||  ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  16099788 aaatggggaacacaccctttgaacatttttttcttctcattgatacttatgtttaaagtcatcga---tattattatggtctctatttg 16099873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 462 - 535
Target Start/End: Complemental strand, 17479610 - 17479537
Alignment:
Q  462 atggtttgaaaatagagatttaattgcatatattttgtacactagttttgatatgttcctaaaaactagttttg 535  Q
    |||||||  |||| ||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  17479610 atggttttgaaatggagatttgattgcatatattttgtgcactagttttgatatgttcctaaaatctagttttg 17479537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 806 - 869
Target Start/End: Complemental strand, 17479171 - 17479108
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  17479171 agagctatccgttagatggagccgcccctatggaaagaccaccattaggaggagagggctatca 17479108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 806 - 869
Target Start/End: Original strand, 14650015 - 14650077
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  14650015 agagctatccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatca 14650077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 806 - 869
Target Start/End: Original strand, 14659806 - 14659868
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  14659806 agagctatccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatca 14659868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 806 - 869
Target Start/End: Original strand, 16100486 - 16100548
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  16100486 agagctatccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatca 16100548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 806 - 869
Target Start/End: Complemental strand, 17653846 - 17653784
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  17653846 agagctatccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatca 17653784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 806 - 869
Target Start/End: Complemental strand, 47050967 - 47050905
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  47050967 agagctatccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatca 47050905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 471 - 573
Target Start/End: Complemental strand, 47051421 - 47051320
Alignment:
Q  471 aaatagagatttaattgcatatattttgtacactagttttgatatgttcctaaaaactagttttgcctagttttgatattgtctaaagcatggttttgga 570  Q
    |||| ||||||| |||||||||||| ||| || |||||||||||||||||| | |||||| |||| |||||||||||||  | |||||||| |||||| |    
T  47051421 aaatggagatttgattgcatatattgtgtgcaatagttttgatatgttcct-acaactagatttgactagttttgatatgttgtaaagcatagttttgaa 47051323  T
Q  571 att 573  Q
    |||    
T  47051322 att 47051320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 356 - 427
Target Start/End: Complemental strand, 17654519 - 17654449
Alignment:
Q  356 aaatgggacacacaccctttggacatttttcttctcattgatacttatgtttaaagtcatcgatattattat 427  Q
    |||||||  |||||||||||| || |||||||||||| |||| || ||||||||||||||||||||||||||    
T  17654519 aaatggggaacacaccctttgaac-tttttcttctcaatgatgctcatgtttaaagtcatcgatattattat 17654449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 806 - 869
Target Start/End: Complemental strand, 29289479 - 29289418
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | |||||||||||||||||| ||||||||||||||||    
T  29289479 agagctatccgttagatggagccgcccc-atggaaaggccaccatta-gaggagagggctatca 29289418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 818 - 869
Target Start/End: Complemental strand, 10991614 - 10991563
Alignment:
Q  818 tagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    ||||| |||||||| |||||||||||||| ||||||||||||| | ||||||    
T  10991614 tagattgagccgcccctatggaaaggccatcattaggaggagaagactatca 10991563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 573
Target Start/End: Original strand, 16100082 - 16100129
Alignment:
Q  526 actagttttgcctagttttgatattgtctaaagcatggttttggaatt 573  Q
    |||||| ||| |||||||||||||  ||||||||||||||||||||||    
T  16100082 actagtgttgactagttttgatatgttctaaagcatggttttggaatt 16100129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 34899532 - 34899578
Alignment:
Q  8 aagttgctcattgagactctttgaagtatatttatcaacttacaatt 54  Q
    |||||||||||| |||||||||||  | |||||||||||||||||||    
T  34899532 aagttgctcattaagactctttgagatgtatttatcaacttacaatt 34899578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 630 - 695
Target Start/End: Complemental strand, 17654155 - 17654090
Alignment:
Q  630 gatttggatttacttatgactacaagtggtagaatttcaattgagtttttatggtacatattttga 695  Q
    ||||||||||||||||||| || |||| || || |||| |||||||||| ||| ||| ||||||||    
T  17654155 gatttggatttacttatgattataagtagtggattttcgattgagttttgatgatacgtattttga 17654090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 9 - 287
Target Start/End: Complemental strand, 4707981 - 4707704
Alignment:
Q  9 agttgctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatgaagattcgtttagaaattattttgtaggtta 108  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4707981 agttgctcattgagactctttgaggtatatttatcaacttacaattcaattagtgtttatttacacatgaagattcgtt-agaaattattttgtaggtta 4707883  T
Q  109 gaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagattcggtg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4707882 gaatggataatatagggatttcatggttaactctagttagagaagtggtggaatgagtttctaattcatgagaaaatattattgatgttcagattcggtg 4707783  T
Q  209 gaaattgctccggtggtcattcagaaaggcatcacaaggaattgagttctttcgtcatatctgtgagttgatgacgatc 287  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  4707782 gaaatttctccggtggtcattcagaaaggcatcactaggaattgagttctttcgtcatatctgtgagttgataacgatc 4707704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 740 - 896
Target Start/End: Original strand, 15924490 - 15924648
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcc-attagatggagccgcctctatgg 838  Q
    ||||||||||||||||||| ||| || |||||||||||||||||||||||||||||| | | ||| ||| ||| || |||||||||||||||| ||||||    
T  15924490 tgttttgaaaattatggttataatgacgacgacctaggtgcacctagtatgtgatttcggttaggtagaattaccccattagatggagccgccactatgg 15924589  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaat 896  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  15924590 aaaggccaccattaggaggagagggctatcaatgagaggtaaactccctaattgaaaat 15924648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 740 - 898
Target Start/End: Complemental strand, 26917929 - 26917769
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcca-ttagatggagccgcctctatgg 838  Q
    |||||| |||||||||||| ||| || ||||||||||||||||||||||||||||||  || ||| ||||||| ||  || |||||||||||| | ||||    
T  26917929 tgttttaaaaattatggttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagagttaccccgttggatggagccgccccgatgg 26917830  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    |||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||    
T  26917829 aaaggccaccattaggaggagagggctatcaatgagaggtaaacttcctaattgaaaatgt 26917769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 740 - 897
Target Start/End: Original strand, 18981973 - 18982132
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcca-ttagatggagccgcctctatgg 838  Q
    ||||||||| |||| |||| ||| || ||||||||||||||||||||||||||||||  || ||| ||| ||| ||  ||||||||||||||| ||||||    
T  18981973 tgttttgaagattacggttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagaattaccccgttagatggagccgcccctatgg 18982072  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatg 897  Q
    ||||||| |||||||||||||||||||||| |||||| |||| |||||||||||||||||    
T  18982073 aaaggccgccattaggaggagagggctatcaatgagaggtaagctccctaattgaaaatg 18982132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 623 - 888
Target Start/End: Complemental strand, 26341246 - 26340968
Alignment:
Q  623 tggatttga-tttggatttacttatgactacaagtggtagaatttcaattgagtttttatggtacatattttga-------tccgatatgttgaaaaata 714  Q
    ||||||||| ||||||||||||||||| || |||| || || ||||||||||||||| ||| ||| ||||||||       | || |||||||  |||||    
T  26341246 tggatttgaatttggatttacttatgattataagtagtggattttcaattgagttttgatgatacctattttgacataagtttcgttatgttgcgaaata 26341147  T
Q  715 tggtttgtgagatgt--tttgagaatt-tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagtt 811  Q
    ||||||  || ||||  ||| |||||  ||||||| |||| | |||| ||| || ||||||||  |||||||||||||||||||||| | ||| ||||||    
T  26341146 tggttttagacatgtgttttaagaatggtgttttgtaaatgacggttataaggacgacgacctgtgtgcacctagtatgtgattttggttaggtagagtt 26341047  T
Q  812 a-tccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaa 888  Q
    | ||| ||| ||||||||||| ||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||    
T  26341046 actccgttaaatggagccgcccctatggaaaggccgccattaggaggaaagggctatcaatgagatgtaaactccctaa 26340968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 740 - 894
Target Start/End: Complemental strand, 4707291 - 4707135
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcc-attagatggagccgcctctatgg 838  Q
    |||||||||||||||| || ||| || ||||||||||||| ||||||||||||||||  || ||| ||||||| || ||||||||||||| || ||||||    
T  4707291 tgttttgaaaattatgattataatgacgacgacctaggtgtacctagtatgtgatttcaattaggtagagttaccccattagatggagccacccctatgg 4707192  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaa 894  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||  ||||||||||    
T  4707191 aaaggccgccattaggaggagagggctatcaatgagaggtaaactgtctaattgaaa 4707135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 15998366 - 15998553
Alignment:
Q  14 ctcattgagactctttgaag-tatatttatcaacttacaattcaattagtgtttatttacacatgaagattcgtttagaaattattttgt-aggttagaa 111  Q
    ||||||||||||  |||||| |||||||||||| |||||| ||||||||||| ||||||| |||||  | |   |||||||||| ||  | || |||||     
T  15998366 ctcattgagacttcttgaaggtatatttatcaatttacaactcaattagtgtatatttacgcatgattactg--ttagaaattaattattgagattagag 15998463  T
Q  112 tggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagat 202  Q
    | ||| | || ||||||| || ||||||  | ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  15998464 tagatgaaatggggattttatcgttaacatt-gttagagaagtagtagaatgagtttctaattcatgagaaaatattattgatgatcagat 15998553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 118 - 202
Target Start/End: Complemental strand, 26918659 - 26918577
Alignment:
Q  118 atatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagat 202  Q
    |||| ||||||| |||||||||  |||||| |||||| ||||||||||||||||||||||||||||| |||||||||| ||||||    
T  26918659 atatggggattttatggttaaca-tagttatagaagtagtagaatgagtttctaattcatgagaaaa-attattgatgctcagat 26918577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 806 - 869
Target Start/End: Complemental strand, 4707102 - 4707040
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  4707102 agagctatccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatca 4707040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 806 - 869
Target Start/End: Original strand, 18982162 - 18982224
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  18982162 agagctatccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatca 18982224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 806 - 869
Target Start/End: Original strand, 15924679 - 15924741
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| |||||||||||| || | |||||||||||||||||||||||||||||||||||    
T  15924679 agagctatccgttagatggagccacccc-atggaaaggccaccattaggaggagagggctatca 15924741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 806 - 869
Target Start/End: Complemental strand, 26917740 - 26917677
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| |||||||||| |||| ||||||||||||||||||||||| ||||| |||||||    
T  26917740 agagatatccgttagatggagtcgcccctatggaaaggccaccattaggaagagagtgctatca 26917677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 774 - 898
Target Start/End: Original strand, 15256924 - 15257048
Alignment:
Q  774 taggtgcacctagtatgtgattttgatgagggagagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatc-atga 872  Q
    |||||| ||||||||||| |||  ||| ||||||||||| | |||||||||| || || ||| | ||||||| |||||||||||| |||| |||| |  |    
T  15256924 taggtgtacctagtatgtcattacgatcagggagagttacctattagatggatccacccctaagaaaaggccgccattaggaggaaagggatatcaacaa 15257023  T
Q  873 gatgtaaactccctaattgaaaatgt 898  Q
     ||||||||| |||||||||||||||    
T  15257024 aatgtaaact-cctaattgaaaatgt 15257048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 806 - 859
Target Start/End: Complemental strand, 26340928 - 26340875
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggag 859  Q
    |||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||    
T  26340928 agagctatccgttagatggagccgcccctatggaaaggccaccatttggaggag 26340875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 356 - 427
Target Start/End: Complemental strand, 4707635 - 4707565
Alignment:
Q  356 aaatgggacacacaccctttggacatttttcttctcattgatacttatgtttaaagtcatcgatattattat 427  Q
    |||||||  |||||||||||| || |||||||||||| |||| || |||||||||||||||||| |||||||    
T  4707635 aaatggggaacacaccctttgaac-tttttcttctcaatgatgctcatgtttaaagtcatcgatgttattat 4707565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 356 - 426
Target Start/End: Complemental strand, 26341579 - 26341511
Alignment:
Q  356 aaatgggacacacaccctttggacatttttcttctcattgatacttatgtttaaagtcatcgatattatta 426  Q
    |||||||| |||||||||||| ||||||| ||| ||||||||| ||||||||||||||||| ||| |||||    
T  26341579 aaatggga-acacaccctttgaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactatta 26341511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 623 - 695
Target Start/End: Complemental strand, 26918057 - 26917984
Alignment:
Q  623 tggatttg-atttggatttacttatgactacaagtggtagaatttcaattgagtttttatggtacatattttga 695  Q
    |||||||| |||||||||||||||||  || |||| ||||| |||| |||||||||| ||| ||| ||||||||    
T  26918057 tggatttgcatttggatttacttatgtttataagtagtagattttcgattgagttttgatgatacgtattttga 26917984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 9 - 287
Target Start/End: Complemental strand, 810175 - 809897
Alignment:
Q  9 agttgctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatgaagattcgtttagaaattattttgtaggtta 108  Q
    ||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  810175 agttgctcattgagactccctgaggtatatttatcaacttacaattcaattagtgtttatttacacatgaagattcgtttagaaattattttgttggtta 810076  T
Q  109 gaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagattcggtg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  810075 gaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagattcggtg 809976  T
Q  209 gaaattgctccggtggtcattcagaaaggcatcacaaggaattgagttctttcgtcatatctgtgagttgatgacgatc 287  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||    
T  809975 gaaattgctccggtggtcattcagaaaggcatccctaggaattgagttctttcgtcatatctgtgagttgataacgatc 809897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 9 - 274
Target Start/End: Original strand, 27560869 - 27561136
Alignment:
Q  9 agttgctcattgagactctttgaagtatatttatcaacttacaattc--aattagtgtttatttacacatgaagattcgtttagaaattattttgtaggt 106  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27560869 agttgctcattgagactctttgaggtatatttatcgacttacaattctcaattagtgtttatttacacatgaagattcgtttagaaattattttgtaggt 27560968  T
Q  107 tagaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagattcgg 206  Q
    ||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27560969 tagaatgaataatgtagggattttatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagattcgg 27561068  T
Q  207 tggaaattgctccggtggtcattcagaaaggcatcacaaggaattgagttctttcgtcatatctgtga 274  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||    
T  27561069 tggaaattgctccggtggtcattcggaaaggcatcactaggaattgagttctttcgtcatatatgtga 27561136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 9 - 274
Target Start/End: Original strand, 37457310 - 37457577
Alignment:
Q  9 agttgctcattgagactctttgaagtatatttatcaacttacaattc--aattagtgtttatttacacatgaagattcgtttagaaattattttgtaggt 106  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37457310 agttgctcattgagactctttgaggtatatttatcgacttacaattctcaattagtgtttatttacacatgaagattcgtttagaaattattttgtaggt 37457409  T
Q  107 tagaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagattcgg 206  Q
    ||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37457410 tagaatgtataatgtagggattttatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagattcgg 37457509  T
Q  207 tggaaattgctccggtggtcattcagaaaggcatcacaaggaattgagttctttcgtcatatctgtga 274  Q
    |||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| |||||    
T  37457510 tggaaattgctctggtggtcattcggaaaggcatcactaggaattgagttctttcgtcatatatgtga 37457577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 742 - 898
Target Start/End: Complemental strand, 9311941 - 9311783
Alignment:
Q  742 ttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagtta-tccattagatggagccgcctctatggaa 840  Q
    |||||||||||| |||| ||| ||||||||||||||||||||||||||||||||| ||| ||| ||||||| ||||||||||||||||||| | ||||||    
T  9311941 ttttgaaaattacggttataatgatgacgacctaggtgcacctagtatgtgatttcgattaggtagagttactccattagatggagccgccccaatggaa 9311842  T
Q  841 aggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    ||||  ||||||||||||||| |||||| | ||||||||||||||||||||||||||||    
T  9311841 aggcatccattaggaggagagagctatcaacgagatgtaaactccctaattgaaaatgt 9311783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 740 - 898
Target Start/End: Original strand, 44323631 - 44323791
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcc-attagatggagccgcctctatgg 838  Q
    ||||||||||||||  ||| ||| || ||||||||||||||||||||||||||||||  || ||| ||||||| || |||||||||||||||| ||||||    
T  44323631 tgttttgaaaattactgttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagagttaccccattagatggagccgcccctatgg 44323730  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||| ||||||||||||||    
T  44323731 aaaggccgccattaggaggagagggctatcaatgagaggtaaactctctaattgaaaatgt 44323791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 740 - 898
Target Start/End: Original strand, 10415399 - 10415559
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagtta-tccattagatggagccgcctctatgg 838  Q
    |||||||||||||| |||| ||| || ||||||||||||||||||||||||||||||  || ||| ||||||| ||| |||||||||||| || ||||||    
T  10415399 tgttttgaaaattacggttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagagttactccgttagatggagccacccctatgg 10415498  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||| |||||||||| ||||    
T  10415499 aaaggccgccattaggaggagagggctatcaatgagaggtaaactacctaattgaagatgt 10415559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 740 - 894
Target Start/End: Complemental strand, 809310 - 809154
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcc-attagatggagccgcctctatgg 838  Q
    ||||||||| |||| |||| ||| || ||||||||||||||||||||||||||||||  || ||| ||||||| || |||||||||||||||| ||||||    
T  809310 tgttttgaagattacggttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagagttaccccattagatggagccgcccctatgg 809211  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaa 894  Q
    ||||||  |||||||||||||||||||||| |||||| |||||||| ||||||||||    
T  809210 aaaggctgccattaggaggagagggctatcaatgagaggtaaactctctaattgaaa 809154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 748 - 898
Target Start/End: Original strand, 45331561 - 45331713
Alignment:
Q  748 aaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcca-ttagatggagccgcctctatggaaaggcca 846  Q
    |||||| |||| ||| || ||||||||||||||||||||||||||||||  || ||| ||| ||| ||  ||||||||||||||| |||||||||||||     
T  45331561 aaattacggttataaagacgacgacctaggtgcacctagtatgtgatttcaattaggtagaattaccccgttagatggagccgcccctatggaaaggcct 45331660  T
Q  847 ccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  45331661 ccattaggaggagagggctatcaatgagaggtaaactccctaattgaaaatgt 45331713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 740 - 898
Target Start/End: Complemental strand, 39155299 - 39155139
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcc-attagatggagccgcctctatgg 838  Q
    |||||||||||||| |||| ||| |  | |||||||||||||||||||||||| |||  || ||| ||||||| || |||||||||||||||| ||||||    
T  39155299 tgttttgaaaattacggttataatggcgtcgacctaggtgcacctagtatgtgttttcaattaggtagagttaccccattagatggagccgcccctatgg 39155200  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    ||||||| |||||||||||||||||||||| |||||  |||||||| ||||||||||||||    
T  39155199 aaaggccgccattaggaggagagggctatcaatgagtggtaaactctctaattgaaaatgt 39155139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 710 - 898
Target Start/End: Original strand, 4405425 - 4405616
Alignment:
Q  710 aaatatggtttgtgagatgttttgagaattt-gttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggaga 808  Q
    |||||||||||  ||||  |||||||||||| ||||||| | |  || || ||| || ||||||||||||||||||||||||||||||  || ||| |||    
T  4405425 aaatatggttttggagacattttgagaattttgttttgagattcgtgattataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtaga 4405524  T
Q  809 gttatcca-ttagatggagccgcctctatggaaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    |||| ||  ||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||| ||||||| | |||||||||||||    
T  4405525 gttaccccgttagatggagccgcccctatggaaaggccgccattaggaggagagggctatcaatgagaggtaaactgcttaattgaaaatgt 4405616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 765 - 898
Target Start/End: Original strand, 31713521 - 31713656
Alignment:
Q  765 atgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcc-attagatggagccgcctctatggaaaggccaccattaggaggagaggg 863  Q
    |||||||||||||||||||||||||||| |||  || ||| ||||||| || |||||||||||||||| ||||||||||||| |||||||||||||||||    
T  31713521 atgacgacctaggtgcacctagtatgtgttttcaattaggtagagttaccccattagatggagccgcccctatggaaaggccgccattaggaggagaggg 31713620  T
Q  864 ctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    ||||| |||||  |||||||| ||||||||||||||    
T  31713621 ctatcaatgagtggtaaactctctaattgaaaatgt 31713656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 766 - 898
Target Start/End: Original strand, 2587734 - 2587868
Alignment:
Q  766 tgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcca-ttagatggagccgcctctatggaaaggccaccattaggaggagagggc 864  Q
    |||||||||||||||||||||||||||||||  || ||| ||| ||| ||  ||||||||||||||| ||||||||||||| ||||||| ||||||||||    
T  2587734 tgacgacctaggtgcacctagtatgtgatttcaattaggtagaattaccctgttagatggagccgcccctatggaaaggccgccattagaaggagagggc 2587833  T
Q  865 tatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    |||| ||| || |||||||||||||||||||||||    
T  2587834 tatcaatgcgaggtaaactccctaattgaaaatgt 2587868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 356 - 477
Target Start/End: Complemental strand, 39155796 - 39155672
Alignment:
Q  356 aaatgggacacacaccctttggacatttttcttctcattgatacttatgtttaaagtcatcgatattattattatggtctctatttgaa------tatga 449  Q
    |||||||  |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||| |      |||||    
T  39155796 aaatggggaacacgccctttgaacatttttcttctcattgatacttatgtttaaagtcatcgatatta---ttatggtctctatttggatttatctatga 39155700  T
Q  450 cttattgagcaaatggtttgaaaataga 477  Q
    ||||||||||||||| ||||||||||||    
T  39155699 cttattgagcaaatgatttgaaaataga 39155672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 740 - 898
Target Start/End: Original strand, 4696178 - 4696338
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcca-ttagatggagccgcctctatgg 838  Q
    ||||||||||||||||||| ||| |  |||| | |||||||||||||||||||| ||  || ||| | ||||| ||  ||||||||||||||| ||||||    
T  4696178 tgttttgaaaattatggttataatggcgacggcttaggtgcacctagtatgtgaattcaattaggtatagttaccccgttagatggagccgcccctatgg 4696277  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    |||||||  ||||||||||||||||||||| || ||| ||||||||||||||| |||||||    
T  4696278 aaaggccgtcattaggaggagagggctatcaataagaggtaaactccctaatttaaaatgt 4696338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 740 - 898
Target Start/End: Complemental strand, 15001359 - 15001204
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagtta-tccattagatggagccgcctctatgg 838  Q
    |||||||||||||| |||| ||| || |||||||||||||||||||| ||         || ||| ||||||| ||| ||||||||||||||| ||||||    
T  15001359 tgttttgaaaattacggttataatgacgacgacctaggtgcacctagcata--------attaggtagagttactccgttagatggagccgcccctatgg 15001268  T
Q  839 aaaggccaccattagga---ggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    ||||||| |||||||||   |||||| |||||| |||||| |||||||||| ||||||||||||    
T  15001267 aaaggccgccattaggaggaggagagcgctatcaatgagaggtaaactccccaattgaaaatgt 15001204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 806 - 869
Target Start/End: Original strand, 10415588 - 10415651
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  10415588 agagctatccgttagatggagccgcccctatggaaaggccaccattaggagaagagggctatca 10415651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 44314709 - 44314767
Alignment:
Q  144 gttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagat 202  Q
    |||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  44314709 gttaaagaagtagtagaatgagtttctaattcataagaaaatattattgatgttcagat 44314767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 44322888 - 44322946
Alignment:
Q  144 gttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagat 202  Q
    |||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  44322888 gttaaagaagtagtagaatgagtttctaattcataagaaaatattattgatgttcagat 44322946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 806 - 869
Target Start/End: Complemental strand, 809121 - 809059
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  809121 agagctatccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatca 809059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 806 - 869
Target Start/End: Original strand, 2587897 - 2587959
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  2587897 agagctatccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatca 2587959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 806 - 869
Target Start/End: Original strand, 4405645 - 4405708
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||| ||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  4405645 agagctatccgttaaatggagccgcccctatgggaaggccaccattaggaggagagggctatca 4405708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 806 - 869
Target Start/End: Original strand, 31713685 - 31713747
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  31713685 agagctatccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatca 31713747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 806 - 869
Target Start/End: Complemental strand, 39155110 - 39155048
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  39155110 agagctatccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatca 39155048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 806 - 869
Target Start/End: Original strand, 44323820 - 44323882
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  44323820 agagctatccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatca 44323882  T

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Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 812 - 869
Target Start/End: Complemental strand, 9311484 - 9311426
Alignment:
Q  812 atccattagatggagccgcctctatggaaa-ggccaccattaggaggagagggctatca 869  Q
    |||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  9311484 atccgttagatggagccgcccctatggaaaaggccaccattaggaggagagggctatca 9311426  T

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Target: chr2; HSP #26
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 45330446 - 45330514
Alignment:
Q  10 gttgctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatga 78  Q
    |||||||||||||||||||| | |||||||||||||||| || |||||||||||  |||||| ||||||    
T  45330446 gttgctcattgagactctttaaggtatatttatcaacttgcatttcaattagtgcatatttagacatga 45330514  T

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Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 817 - 869
Target Start/End: Complemental strand, 9311612 - 9311559
Alignment:
Q  817 ttagatggagccgcctctatggaaa-ggccaccattaggaggagagggctatca 869  Q
    ||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||    
T  9311612 ttagatggagccgcccctatggaaaaggccaccattaggaggaaagggctatca 9311559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 806 - 867
Target Start/End: Complemental strand, 26894881 - 26894820
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctat 867  Q
    |||| ||||| ||| ||||||||||| |  ||||||||||||||||||||||||||||||||    
T  26894881 agagctatccgttatatggagccgccccattggaaaggccaccattaggaggagagggctat 26894820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 806 - 867
Target Start/End: Complemental strand, 26900320 - 26900259
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctat 867  Q
    |||| ||||| ||| ||||||||||| |  ||||||||||||||||||||||||||||||||    
T  26900320 agagctatccgttatatggagccgccccattggaaaggccaccattaggaggagagggctat 26900259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 817 - 869
Target Start/End: Original strand, 4696377 - 4696429
Alignment:
Q  817 ttagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||||||||||||||  |||||||||| |||||||||||||| ||||||||||    
T  4696377 ttagatggagccgcccatatggaaaggacaccattaggaggatagggctatca 4696429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 356 - 427
Target Start/End: Complemental strand, 809826 - 809756
Alignment:
Q  356 aaatgggacacacaccctttggacatttttcttctcattgatacttatgtttaaagtcatcgatattattat 427  Q
    |||||||  |||||||||||| || |||||||| ||| |||| || ||||||||||||||||||||||||||    
T  809826 aaatggggaacacaccctttgaac-tttttcttatcaatgatgctcatgtttaaagtcatcgatattattat 809756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 806 - 869
Target Start/End: Original strand, 45331742 - 45331804
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| |||||||||| |||| | ||||||| |||||||||||||||||||||||||||    
T  45331742 agagctatccgttagatggagtcgcccc-atggaaatgccaccattaggaggagagggctatca 45331804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 609 - 693
Target Start/End: Original strand, 45331275 - 45331360
Alignment:
Q  609 atatgtactcgaagtggatttga-tttggatttacttatgactacaagtggtagaatttcaattgagtttttatggtacatatttt 693  Q
    ||||||||| ||  ||||||||| |||||||||| |||||| || || | ||||| ||||||||||||||| ||||| ||||||||    
T  45331275 atatgtacttgatttggatttgaatttggatttatttatgattataactagtagattttcaattgagttttgatggtgcatatttt 45331360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 31712763 - 31712831
Alignment:
Q  10 gttgctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatga 78  Q
    |||||||||||||||| ||| | ||||||||||||||||| | |||||||| ||  |||||| ||||||    
T  31712763 gttgctcattgagactttttaaggtatatttatcaacttatatttcaattaatgcatatttagacatga 31712831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 39156348 - 39156280
Alignment:
Q  10 gttgctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatga 78  Q
    |||||||||||||||| ||| | ||||||||||||||||| | |||||||| ||  |||||| ||||||    
T  39156348 gttgctcattgagactttttaaggtatatttatcaacttatatttcaattaatgcatatttagacatga 39156280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 10414571 - 10414617
Alignment:
Q  25 tctttgaagtatatttatcaacttacaattcaattagtgtttattta 71  Q
    ||||||| ||||||||||||||||||  |||||||||||| ||||||    
T  10414571 tctttgaggtatatttatcaacttacctttcaattagtgtatattta 10414617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 356 - 427
Target Start/End: Complemental strand, 15001856 - 15001783
Alignment:
Q  356 aaatgggacacacaccctttggacatttttcttctcattgatacttatgttt--aaagtcatcgatattattat 427  Q
    |||||||  ||||||||||||  | |||||||||||| |||| || ||||||  ||||||||||||||||||||    
T  15001856 aaatggggaacacaccctttgagcttttttcttctcaatgatgctcatgtttttaaagtcatcgatattattat 15001783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 766 - 895
Target Start/End: Complemental strand, 20024309 - 20024181
Alignment:
Q  766 tgacgacctaggtgcacctagtatgtgattttgatgagggagagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggct 865  Q
    |||||||| |||||||||||||||| ||||  ||| |||||||||| ||  |||||||||| | || || | | ||||||  |||||| | |||| ||||    
T  20024309 tgacgacc-aggtgcacctagtatgagattacgattagggagagtt-tctgttagatggagtcacccctctaggaaggccgacattagaaagagaaggct 20024212  T
Q  866 atc-atgagatgtaaactccctaattgaaaa 895  Q
    ||| ||||||||| ||||| |||||||||||    
T  20024211 atcaatgagatgtgaactctctaattgaaaa 20024181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 225; Significance: 1e-123; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 9 - 274
Target Start/End: Complemental strand, 5743031 - 5742764
Alignment:
Q  9 agttgctcattgagactctttgaagtatatttatcaacttacaattc--aattagtgtttatttacacatgaagattcgtttagaaattattttgtaggt 106  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5743031 agttgctcattgagactctttgaggtatatttatcgacttacaattctcaattagtgtttatttacacatgaagattcgtttagaaattattttgtaggt 5742932  T
Q  107 tagaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagattcgg 206  Q
    ||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5742931 tagaatgaataatgtagggattttatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagattcgg 5742832  T
Q  207 tggaaattgctccggtggtcattcagaaaggcatcacaaggaattgagttctttcgtcatatctgtga 274  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||    
T  5742831 tggaaattgctccggtggtcattcggaaaggcatcactaggaattgagttctttcgtcatatatgtga 5742764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 609 - 898
Target Start/End: Complemental strand, 11513529 - 11513239
Alignment:
Q  609 atatgtactcgaagtggatttgatttggatttacttatgactacaagtggtagaatttcaattgagtttttatggtacatattttgatccgatatgttga 708  Q
    |||||||||||| |||||||||||||| ||||||||||||||| |||||||||| ||| |||||| |||| |||||||||||||||||||||||||||||    
T  11513529 atatgtactcgacgtggatttgatttgaatttacttatgactataagtggtagatttttaattga-ttttgatggtacatattttgatccgatatgttga 11513431  T
Q  709 aaaatatggtttgtgagatgttttgagaatttgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggaga 808  Q
    ||||||||||||| ||||  ||||||||||||||||||||||||| |||| ||| || ||||||||||||||||||||||||||||||  || ||| |||    
T  11513430 aaaatatggtttgggagacattttgagaatttgttttgaaaattacggttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtaga 11513331  T
Q  809 gtta-tccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    |||| ||| ||||||||||||| | ||||||||||||  | ||||| |||||||||||||| |||||| |||||||||||||||||||||||    
T  11513330 gttattccgttagatggagccgaccctatggaaaggctgctattagaaggagagggctatcaatgagaggtaaactccctaattgaaaatgt 11513239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 740 - 898
Target Start/End: Complemental strand, 18694806 - 18694648
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagtta-tccattagatggagccgcctctatgg 838  Q
    ||||||||||||||||||| ||| || |||||||||||||||||||||||||||||| ||| |||   ||||| |||||||||||||||| || | ||||    
T  18694806 tgttttgaaaattatggttataatgacgacgacctaggtgcacctagtatgtgatttcgattagg--tagttactccattagatggagccaccccaatgg 18694709  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18694708 aaaggccgccattaggaggagagggctatcaatgagatgtaaactccctaattgaaaatgt 18694648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 743 - 898
Target Start/End: Original strand, 51533219 - 51533374
Alignment:
Q  743 tttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagtta-tccattagatggagccgcctctatggaaa 841  Q
    ||||||||||| |||| |||  | |||||||||||||||||||||||||||||| ||| ||| ||  ||| ||||||||||||||||||| | |||||||    
T  51533219 tttgaaaattacggttataataacgacgacctaggtgcacctagtatgtgatttcgattaggtag--ttactccattagatggagccgccccaatggaaa 51533316  T
Q  842 ggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  51533317 ggccgccattaggaggagagggctatcaatgagatgtaaactccctaattgaaaatgt 51533374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 740 - 898
Target Start/End: Complemental strand, 4764136 - 4763976
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcca-ttagatggagccgcctctatgg 838  Q
    ||||||||||||||||||| ||| || |||||||||||| |||||||||||||||||  || ||| ||| ||| ||  ||||||||||||||| ||||||    
T  4764136 tgttttgaaaattatggttataatgacgacgacctaggtacacctagtatgtgatttcaattaggtagaattaccccgttagatggagccgcccctatgg 4764037  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||||||||||| |||||||    
T  4764036 aaaggccgccattaggaggagagggctatcaatgagaggtaaactccctaattaaaaatgt 4763976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 740 - 898
Target Start/End: Complemental strand, 27561798 - 27561638
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcc-attagatggagccgcctctatgg 838  Q
    |||||||||||||| |||| ||| | || ||||||||||||||||||||||||||||  || ||| ||||||| || |||||||||||||||| ||||||    
T  27561798 tgttttgaaaattacggttataatggtgtcgacctaggtgcacctagtatgtgatttcaattaggtagagttaccccattagatggagccgcccctatgg 27561699  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    ||||||| ||||||||||||| |||||||| |||||| |||||||| ||||||||||||||    
T  27561698 aaaggccgccattaggaggagggggctatcaatgagaggtaaactctctaattgaaaatgt 27561638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 742 - 898
Target Start/End: Complemental strand, 27734358 - 27734202
Alignment:
Q  742 ttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagtta-tccattagatggagccgcctctatggaa 840  Q
    ||||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||  || ||  | ||||| ||| ||||||||||||||| ||||||||    
T  27734358 ttttgaaaattatggttataatgatgacgacccaggtgcatctagtatgtgatttcaattag--atagttactccgttagatggagccgcccctatggaa 27734261  T
Q  841 aggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    |||   |||||||||||||||||||||| |||||| ||||||| || ||||||||||||    
T  27734260 aggttgccattaggaggagagggctatcaatgagaggtaaactaccgaattgaaaatgt 27734202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 356 - 477
Target Start/End: Complemental strand, 27562295 - 27562171
Alignment:
Q  356 aaatgggacacacaccctttggacatttttcttctcattgatacttatgtttaaagtcatcgatattattattatggtctctatttgaa------tatga 449  Q
    |||||||  |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||| |      |||||    
T  27562295 aaatggggaacacgccctttgaacatttttcttctcattgatacttatgtttaaagtcatcgatatta---ttatggtctctatttggatttatctatga 27562199  T
Q  450 cttattgagcaaatggtttgaaaataga 477  Q
    ||||||||||||||| ||||||||||||    
T  27562198 cttattgagcaaatgatttgaaaataga 27562171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 367 - 493
Target Start/End: Complemental strand, 54352952 - 54352822
Alignment:
Q  367 acaccctttggacatttttcttctcattgatacttatgtttaaagtcatcgatattattattatggtctctatttgaa------tatgacttattga-gc 459  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||| |      |||||||||||||       
T  54352952 acaccctttgaacatttttcttctcattgatacttatgtttaaagtcatcgatatta---ttatggtctctatttggatttatctatgacttattgatta 54352856  T
Q  460 aaatggtttgaaaatagagatttaattgcatata 493  Q
    ||||| ||||||||||||| ||| ||||||||||    
T  54352855 aaatgatttgaaaatagaggtttgattgcatata 54352822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 622 - 898
Target Start/End: Complemental strand, 54352605 - 54352327
Alignment:
Q  622 gtggatttgatttggatttacttatgactacaagtggtagaatttcaattgagtttttatggtacatattttgatccga-------tatgttgaaaaata 714  Q
    ||||||||||||||||||||||||||||||||||||||||| || | |||||||||| |||  || ||| ||| ||| |       |||||||  |||||    
T  54352605 gtggatttgatttggatttacttatgactacaagtggtagatttccgattgagttttgatga-acgtatgttggtccaagttttgttatgttgcgaaata 54352507  T
Q  715 tggtttgtgagatgt--tttgagaatttg-ttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagtt 811  Q
    ||||||  || ||||  ||| |||||  | |||||||||||| |||| ||| ||  ||||||||||||||| ||||||||||||| ||| ||| ||||||    
T  54352506 tggttttagacatgtgttttaagaatggggttttgaaaattacggttataatgacaacgacctaggtgcacatagtatgtgatttcgattaggtagagtt 54352407  T
Q  812 a-tccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    | ||||||||||| ||| ||| | ||||||||||  |||||         |||||||| ||||||||||||||||||||||||||||||    
T  54352406 actccattagatgaagctgccccaatggaaaggctgccatt---------gggctatcaatgagatgtaaactccctaattgaaaatgt 54352327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 806 - 869
Target Start/End: Complemental strand, 4763947 - 4763885
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  4763947 agagctatccattagatggagccgcccc-atggaaaggccaccattaggaggagagggctatca 4763885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 806 - 869
Target Start/End: Complemental strand, 5359056 - 5358993
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    ||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  5359056 agagtgatccgttagatggagccgcccctatggaaaggccaccattaggaggagaggactatca 5358993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 811 - 869
Target Start/End: Complemental strand, 27734168 - 27734110
Alignment:
Q  811 tatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    ||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  27734168 tatccgttagatggagctgcccctatggaaaggccaccattaggaggagagggctatca 27734110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 806 - 869
Target Start/End: Complemental strand, 27561609 - 27561547
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  27561609 agagctatccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatca 27561547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 356 - 427
Target Start/End: Complemental strand, 4764637 - 4764567
Alignment:
Q  356 aaatgggacacacaccctttggacatttttcttctcattgatacttatgtttaaagtcatcgatattattat 427  Q
    |||||||  |||||||||||| || |||||||||||| |||| || ||||||||||||||||||||||||||    
T  4764637 aaatggggaacacaccctttgaac-tttttcttctcaatgatgctcatgtttaaagtcatcgatattattat 4764567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 806 - 869
Target Start/End: Complemental strand, 18694620 - 18694558
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | |||| ||||||||||||||||||||||||||||||    
T  18694620 agagctatccgttagatggagccgcccc-atgggaaggccaccattaggaggagagggctatca 18694558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 817 - 869
Target Start/End: Complemental strand, 54352288 - 54352237
Alignment:
Q  817 ttagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    ||||||||||||||| | |||| ||||||||||||||||||||||||||||||    
T  54352288 ttagatggagccgcccc-atgggaaggccaccattaggaggagagggctatca 54352237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 740 - 885
Target Start/End: Complemental strand, 5359248 - 5359099
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagg----gagagtta-tccattagatggagccgcctct 834  Q
    |||||||||||||| |||| ||| || |||||| || ||||||||| |||||||||||| | |||     ||||||| ||| |||||| ||| |||| ||    
T  5359248 tgttttgaaaattacggttataatgacgacgacatacgtgcacctactatgtgattttggttaggtagctagagttactccgttagatagagtcgcccct 5359149  T
Q  835 atggaaaggccaccattaggaggagagggctatc-atgagatgtaaactccc 885  Q
    |||||||| |  |  | ||||||||||||||||| |||||||||||||||||    
T  5359148 atggaaagtctgc--tcaggaggagagggctatcaatgagatgtaaactccc 5359099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 806 - 869
Target Start/End: Complemental strand, 11513209 - 11513146
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||  | | ||||| |||||||||||||||||||||||||||||||    
T  11513209 agagctatccgttagatggagttgtccctatgaaaaggccaccattaggaggagagggctatca 11513146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 806 - 869
Target Start/End: Original strand, 51533402 - 51533464
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||| ||||||||||| | |||| ||||||||||||||||||||||||||||||    
T  51533402 agagctatccgttatatggagccgcccc-atgggaaggccaccattaggaggagagggctatca 51533464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 623 - 695
Target Start/End: Complemental strand, 4764264 - 4764191
Alignment:
Q  623 tggatttga-tttggatttacttatgactacaagtggtagaatttcaattgagtttttatggtacatattttga 695  Q
    ||||||||| ||||||||||||||||| || |||| ||||| |||| |||||||||| ||| ||| ||||||||    
T  4764264 tggatttgaatttggatttacttatgattataagtagtagattttcgattgagttttgatgatacgtattttga 4764191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 623 - 695
Target Start/End: Complemental strand, 18694934 - 18694861
Alignment:
Q  623 tggatttga-tttggatttacttatgactacaagtggtagaatttcaattgagtttttatggtacatattttga 695  Q
    ||||||||| ||||||||||||||||| || |||| ||||| |||| |||||||||| ||| ||| ||||||||    
T  18694934 tggatttgaatttggatttacttatgattataagtagtagattttcgattgagttttgatgatacgtattttga 18694861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 427
Target Start/End: Complemental strand, 18695313 - 18695243
Alignment:
Q  356 aaatgggacacacaccctttggacatttttcttctcattgatacttatgtttaaagtcatcgatattattat 427  Q
    |||||||  |||||||||||| || |||||||| ||| |||| ||  |||||||||||||||||||||||||    
T  18695313 aaatggggaacacaccctttgaac-tttttcttatcaatgatgctcgtgtttaaagtcatcgatattattat 18695243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 806 - 869
Target Start/End: Complemental strand, 27734012 - 27733949
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||| |||  || ||||||||| |||||||||||||||||| ||||||||    
T  27734012 agagctatccgttagatgaagcttcccctatggaaaagccaccattaggaggagacggctatca 27733949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 573
Target Start/End: Complemental strand, 54352670 - 54352623
Alignment:
Q  526 actagttttgcctagttttgatattgtctaaagcatggttttggaatt 573  Q
    |||||| ||| |||||||||||||  ||||||||||||||||||||||    
T  54352670 actagtgttgactagttttgatatgttctaaagcatggttttggaatt 54352623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 623 - 695
Target Start/End: Complemental strand, 27734487 - 27734414
Alignment:
Q  623 tggatttg-atttggatttacttatgactacaagtggtagaatttcaattgagtttttatggtacatattttga 695  Q
    |||||||| |||||||||||||||||| || |||| ||||| |||| |||||||||| ||| ||| ||| ||||    
T  27734487 tggatttgcatttggatttacttatgattataagtagtagattttcgattgagttttgatgatacgtatcttga 27734414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 170; Significance: 9e-91; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 9 - 202
Target Start/End: Complemental strand, 5735778 - 5735585
Alignment:
Q  9 agttgctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatgaagattcgtttagaaattattttgtaggtta 108  Q
    ||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5735778 agttgctcattgagactctttgaggtatatttataaacatacaattcaattagtgtttatttacacatgaagattcgtttagaaattattttgtaggtta 5735679  T
Q  109 gaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagat 202  Q
    ||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5735678 gaatggataatgtagggattttgtggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagat 5735585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 9 - 202
Target Start/End: Complemental strand, 5772890 - 5772697
Alignment:
Q  9 agttgctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatgaagattcgtttagaaattattttgtaggtta 108  Q
    ||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5772890 agttgctcattgagactctttgaggtatatttataaacatacaattcaattagtgtttatttacacatgaagattcgtttagaaattattttgtaggtta 5772791  T
Q  109 gaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagat 202  Q
    ||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5772790 gaatggataatgtagggattttgtggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagat 5772697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 600 - 898
Target Start/End: Complemental strand, 5706327 - 5706020
Alignment:
Q  600 ttggcatttatatgtactcgaagtggatttgatttggatttacttatgactacaagtggtagaatttcaattgagtttttatggtacatattttgatc-- 697  Q
    |||| ||| |||| || |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||  || ||| |||||       
T  5706327 ttggtattaatatttattcgatgtggatttgatttggatttacttatgactacaagtggtagattttcaattgaattttgatga-acgtatgttgatata 5706229  T
Q  698 -----cgatatgttgaaaaatatggtttgtgagatgt--tttgagaatttg-ttttgaaaattatggttttaacgatgacgacctaggtgcacctagtat 789  Q
         || |||||||  |||||||||||  || ||||  ||| |||||  | |||||||||||| | || ||| || |||||||||||||||||||||||    
T  5706228 agtttcgttatgttgcgaaatatggttttagacatgtgttttaagaatgaggttttgaaaattacgattataatgacgacgacctaggtgcacctagtat 5706129  T
Q  790 gtgattttgatgagggagagtta-tccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatc-atgagatgtaaactcccta 887  Q
    |||| || ||| ||| ||  ||| ||||||||||||||||||| | ||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  5706128 gtgacttcgattaggtag--ttactccattagatggagccgccccaatggaaaggccgccattaggaggagagggctatcaatgagatgtaaactcccta 5706031  T
Q  888 attgaaaatgt 898  Q
    |||||||||||    
T  5706030 attgaaaatgt 5706020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 740 - 898
Target Start/End: Complemental strand, 6911973 - 6911813
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcca-ttagatggagccgcctctatgg 838  Q
    ||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||  || ||| ||| ||| ||  ||||||||||||||| ||||||    
T  6911973 tgttttgaaaattatggttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagaattaccccgttagatggagccgcccctatgg 6911874  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  6911873 aaaggccgccattaggaggagagggctatcaatgagaggtaaactccctaattgaaaatgt 6911813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 740 - 898
Target Start/End: Original strand, 28103368 - 28103528
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcca-ttagatggagccgcctctatgg 838  Q
    ||||||||| |||| |||| ||| || ||||||||||||||||||||||||||||||  || ||| ||| ||| ||  ||||||||||||||| ||||||    
T  28103368 tgttttgaagattacggttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagaattaccccgttagatggagccgcccctatgg 28103467  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  28103468 aaaggccgccattaggaggagagggctatcaatgagaggtaaactccctaattgaaaatgt 28103528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 766 - 898
Target Start/End: Original strand, 19434585 - 19434719
Alignment:
Q  766 tgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcc-attagatggagccgcctctatggaaaggccaccattaggaggagagggc 864  Q
    |||||| ||||||||||||||||||||||||  || ||| ||| ||| || |||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  19434585 tgacgatctaggtgcacctagtatgtgatttcaattaggtagaattaccccattagatggagccgcccctatggaaaggccgccattaggaggagagggc 19434684  T
Q  865 tatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    |||| |||||| |||||||||||||||||||||||    
T  19434685 tatcaatgagaggtaaactccctaattgaaaatgt 19434719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 740 - 894
Target Start/End: Complemental strand, 28059092 - 28058936
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcc-attagatggagccgcctctatgg 838  Q
    |||||| ||||||| |||| ||| || ||||||||||| ||||||||||| ||||||  || ||| ||||||| || |||||||||||||||| ||||||    
T  28059092 tgttttaaaaattacggttataatgacgacgacctaggagcacctagtatctgatttcaattaggtagagttaccccattagatggagccgcccctatgg 28058993  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaa 894  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||| ||||||||||    
T  28058992 aaaggccgccattaggaggagagggctatcaatgagaggtaaactctctaattgaaa 28058936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 740 - 894
Target Start/End: Complemental strand, 28069517 - 28069361
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcc-attagatggagccgcctctatgg 838  Q
    |||||| ||||||| |||| ||| || ||||||||||| ||||||||||| ||||||  || ||| ||||||| || |||||||||||||||| ||||||    
T  28069517 tgttttaaaaattacggttataatgacgacgacctaggagcacctagtatctgatttcaattaggtagagttaccccattagatggagccgcccctatgg 28069418  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaa 894  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||| ||||||||||    
T  28069417 aaaggccgccattaggaggagagggctatcaatgagaggtaaactctctaattgaaa 28069361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 370 - 477
Target Start/End: Original strand, 19434044 - 19434154
Alignment:
Q  370 ccctttggacatttttcttctcattgatacttatgtttaaagtcatcgatattattattatggtctctatttgaa------tatgacttattgagcaaat 463  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||      |||||||||||||||||||    
T  19434044 ccctttgaacatttttcttctcattgatacttatgtttaaagtcatcga---tattattatggtctctatttgaatttatctatgacttattgagcaaat 19434140  T
Q  464 ggtttgaaaataga 477  Q
    | ||||||||||||    
T  19434141 gatttgaaaataga 19434154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 766 - 898
Target Start/End: Complemental strand, 9436793 - 9436659
Alignment:
Q  766 tgacgacctaggtgcacctagtatgtgattttgatgagggagagtta-tccattagatggagccgcctctatggaaaggccaccattaggaggagagggc 864  Q
    ||||||||||||||||||||||||||||||| | | ||| ||||||| ||| ||||||||||  ||| |||||| ||||| |||||| ||||||||||||    
T  9436793 tgacgacctaggtgcacctagtatgtgatttcggttaggtagagttactccgttagatggagttgcccctatgggaaggctaccattgggaggagagggc 9436694  T
Q  865 tatc--atgagatgtaaactccctaattgaaaatgt 898  Q
    ||||  |||||||||||||||||| |||||||||||    
T  9436693 tatcaaatgagatgtaaactccct-attgaaaatgt 9436659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 806 - 869
Target Start/End: Original strand, 19434748 - 19434810
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  19434748 agagctatccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatca 19434810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 806 - 869
Target Start/End: Complemental strand, 28058903 - 28058841
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  28058903 agagctatccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatca 28058841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 806 - 869
Target Start/End: Complemental strand, 28069328 - 28069266
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  28069328 agagctatccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatca 28069266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 806 - 869
Target Start/End: Complemental strand, 6911784 - 6911722
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | |||||||||||||||||||||||||| ||||||||    
T  6911784 agagctatccgttagatggagccgcccc-atggaaaggccaccattaggaggagatggctatca 6911722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 356 - 427
Target Start/End: Complemental strand, 6912480 - 6912410
Alignment:
Q  356 aaatgggacacacaccctttggacatttttcttctcattgatacttatgtttaaagtcatcgatattattat 427  Q
    |||||||  |||||||||||| || |||||||||||| |||| || ||||||||||||||||||||||||||    
T  6912480 aaatggggaacacaccctttgaac-tttttcttctcaatgatgctcatgtttaaagtcatcgatattattat 6912410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 767 - 869
Target Start/End: Original strand, 11200272 - 11200375
Alignment:
Q  767 gacgacctaggtgcacctagtatgtgattttgatgagggagagtta-tccattagatggagccgcctctatggaaaggccaccattaggaggagagggct 865  Q
    ||||| ||||||||||||||||||||||||   | ||| ||||||| | ||||||||| |   ||| ||||||||||| ||||||||||||||||||||     
T  11200272 gacgaactaggtgcacctagtatgtgatttcagttaggtagagttactgcattagatgaaaatgcccctatggaaaggtcaccattaggaggagagggcc 11200371  T
Q  866 atca 869  Q
    ||||    
T  11200372 atca 11200375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 471 - 573
Target Start/End: Original strand, 19434291 - 19434392
Alignment:
Q  471 aaatagagatttaattgcatatattttgtacactagttttgatatgttcctaaaaactagttttgcctagttttgatattgtctaaagcatggttttgga 570  Q
    |||| ||||||| |||||||||||||||| || |||||||||||| ||||| | |||||| |||| ||| |||||||||  | |||||||| |||||| |    
T  19434291 aaatggagatttgattgcatatattttgtgcaatagttttgatattttcct-ataactagatttgactatttttgatatgttgtaaagcatagttttgaa 19434389  T
Q  571 att 573  Q
    |||    
T  19434390 att 19434392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 623 - 695
Target Start/End: Complemental strand, 6912101 - 6912028
Alignment:
Q  623 tggatttga-tttggatttacttatgactacaagtggtagaatttcaattgagtttttatggtacatattttga 695  Q
    ||||||||| ||||||||||||||||| || |||| ||||| ||||||||||||||| ||| ||| ||||||||    
T  6912101 tggatttgaatttggatttacttatgattataagtagtagattttcaattgagttttgatgatacgtattttga 6912028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 471 - 519
Target Start/End: Complemental strand, 5706431 - 5706383
Alignment:
Q  471 aaatagagatttaattgcatatattttgtacactagttttgatatgttc 519  Q
    |||| ||||||| |||||||||||||||| |||||||||||||||||||    
T  5706431 aaatggagatttgattgcatatattttgtgcactagttttgatatgttc 5706383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 806 - 869
Target Start/End: Complemental strand, 5705992 - 5705930
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | || | ||||||||||||||||||||||||||||||    
T  5705992 agagctatccgttagatggagccgcccc-ataggaaggccaccattaggaggagagggctatca 5705930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 806 - 869
Target Start/End: Original strand, 28103557 - 28103619
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| |||||||||| |||| | ||||||| |||||||||||||||||||||||||||    
T  28103557 agagctatccgttagatggagtcgcccc-atggaaatgccaccattaggaggagagggctatca 28103619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 471 - 573
Target Start/End: Original strand, 11199970 - 11200071
Alignment:
Q  471 aaatagagatttaattgcatatattttgtacactagttttgatatgttcctaaaaactagttttgcctagttttgatattgtctaaagcatggttttgga 570  Q
    |||| ||||||| |||||| |||||  ||  |||||| || |||||||||| ||| ||||||||| |||||||||||||  | ||||||||||||||| |    
T  11199970 aaatggagatttgattgcacatattgagtgtactagtattcatatgttcctcaaa-ctagttttgactagttttgatatattgtaaagcatggttttgaa 11200068  T
Q  571 att 573  Q
    |||    
T  11200069 att 11200071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 7688223 - 7688276
Alignment:
Q  11 ttgctcattgagactcttt-gaagtatatttatcaacttacaattcaattagtg 63  Q
    ||||||||||||| | ||| |||||||||||||||||||||| |||||||||||    
T  7688223 ttgctcattgagatttttttgaagtatatttatcaacttacatttcaattagtg 7688276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 605 - 695
Target Start/End: Original strand, 11200098 - 11200190
Alignment:
Q  605 atttatatgtactcgaagtggatttgatttggattt--acttatgactacaagtggtagaatttcaattgagtttttatggtacatattttga 695  Q
    ||||||||||||| ||  |||||| |||||||||||  |||||||| || |||| ||| | ||||||||||||||| | |||| |||||||||    
T  11200098 atttatatgtacttgatttggattggatttggatttggacttatgattataagtagtaaattttcaattgagttttgacggtaaatattttga 11200190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 812 - 861
Target Start/End: Complemental strand, 17958787 - 17958738
Alignment:
Q  812 atccattagatggagccgcctctatggaaaggccaccattaggaggagag 861  Q
    |||| |||||||||| |||  |||||||||||||||||||||||||||||    
T  17958787 atccgttagatggagtcgctcctatggaaaggccaccattaggaggagag 17958738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 97; Significance: 3e-47; HSPs: 7)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 740 - 898
Target Start/End: Original strand, 341 - 501
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcc-attagatggagccgcctctatgg 838  Q
    ||||||||||||||||||| ||| || |||||||||||| |||||||||||||||||  || ||| ||| ||| || |||||||||||||||| ||||||    
T  341 tgttttgaaaattatggttataatgacgacgacctaggtacacctagtatgtgatttcaattaggcagaattaccccattagatggagccgcccctatgg 440  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  441 aaaggccgccattaggaggagagggctatcaatgagatgtaaactccctaattgaaaatgt 501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 3792 - 3988
Alignment:
Q  8 aagttgctcattgagact-ctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatgaagattcgtttagaaattattttgt--ag 104  Q
    |||||| ||||||||||| ||| || |||||||||||||||||||| ||||||||||  |||||| ||||||  | | ||| |||||||| ||| |  ||    
T  3792 aagttgttcattgagacttcttggaggtatatttatcaacttacaactcaattagtgcatatttagacatgattagttgtt-agaaattaattttttgag 3890  T
Q  105 gttagaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagat 202  Q
     ||||| | |||  | | |||| ||  ||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  3891 attagagtagattgtttggggaatttgtggttaactatagttagagaagtagtagaatgagtttctaattcatgagagaatattattgatgttcagat 3988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 806 - 869
Target Start/End: Original strand, 530 - 592
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  530 agagctatccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatca 592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 356 - 445
Target Start/End: Original strand, 8 - 93
Alignment:
Q  356 aaatgggacacacaccctttggacatttttcttctcattgatacttatgtttaaagtcatcgatattattattatggtctctatttgaat 445  Q
    |||||||  |||||||||||| || |||||||||||| |||| || |||||||||||||||||||||   |||||||||||| |||||||    
T  8 aaatggggaacacaccctttgaac-tttttcttctcaatgatgctcatgtttaaagtcatcgatatt---attatggtctctgtttgaat 93  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 356 - 445
Target Start/End: Original strand, 4144 - 4229
Alignment:
Q  356 aaatgggacacacaccctttggacatttttcttctcattgatacttatgtttaaagtcatcgatattattattatggtctctatttgaat 445  Q
    |||||||  |||||||||||| || |||||||||||| |||| || |||||||||||||||||||||   |||||||||||| |||||||    
T  4144 aaatggggaacacaccctttgaac-tttttcttctcaatgatgctcatgtttaaagtcatcgatatt---attatggtctctgtttgaat 4229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 630 - 695
Target Start/End: Original strand, 221 - 286
Alignment:
Q  630 gatttggatttacttatgactacaagtggtagaatttcaattgagtttttatggtacatattttga 695  Q
    ||||||||||||||||||| || |||| || || |||| |||||||||| ||| ||| ||||||||    
T  221 gatttggatttacttatgattataagtagtggattttcgattgagttttgatgatacgtattttga 286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 630 - 695
Target Start/End: Original strand, 4357 - 4422
Alignment:
Q  630 gatttggatttacttatgactacaagtggtagaatttcaattgagtttttatggtacatattttga 695  Q
    ||||||||||||||||||| || |||| || || |||| |||||||||| ||| ||| ||||||||    
T  4357 gatttggatttacttatgattataagtagtggattttcgattgagttttgatgatacgtattttga 4422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 3e-47; HSPs: 40)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 740 - 898
Target Start/End: Original strand, 9814366 - 9814526
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcc-attagatggagccgcctctatgg 838  Q
    ||||||||||||||||||| ||| || |||||||||||||||||||||||||||||| | | ||| ||| ||| || |||||||||||||||| ||||||    
T  9814366 tgttttgaaaattatggttataatgacgacgacctaggtgcacctagtatgtgatttcggttaggtagaattaccccattagatggagccgcccctatgg 9814465  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    |||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||    
T  9814466 aaaggccaccattaggaggagagggctatcaatgagaggtaaacttcctaattgaaaatgt 9814526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 740 - 898
Target Start/End: Original strand, 22013523 - 22013683
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcc-attagatggagccgcctctatgg 838  Q
    ||||||||||||||  ||| ||| || ||||||||||||||||||||||||||||||  || ||| ||||||| || |||||||||||||||| ||||||    
T  22013523 tgttttgaaaattactgttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagagttaccccattagatggagccgcccctatgg 22013622  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||| ||||||||||||||    
T  22013623 aaaggccgccattaggaggagagggctatcaatgagaggtaaactctctaattgaaaatgt 22013683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 740 - 898
Target Start/End: Complemental strand, 25478904 - 25478744
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagtta-tccattagatggagccgcctctatgg 838  Q
    ||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||  || ||| ||| |||  || ||||||||||||||| ||||||    
T  25478904 tgttttgaaaattatggttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagatttaccccgttagatggagccgcccctatgg 25478805  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    |||||||  ||||||||||||| ||||||| |||||| |||||||||||||||||||||||    
T  25478804 aaaggccttcattaggaggagatggctatcaatgagaggtaaactccctaattgaaaatgt 25478744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 740 - 898
Target Start/End: Original strand, 27526793 - 27526953
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcca-ttagatggagccgcctctatgg 838  Q
    |||||||||||||| |||| ||| || |||||||||| |||||||||||||||||||  || ||| ||| ||| ||  ||||||||||||||| ||||||    
T  27526793 tgttttgaaaattacggttataatgacgacgacctagatgcacctagtatgtgatttcaattaggtagaattaccccgttagatggagccgcccctatgg 27526892  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  27526893 aaaggccgccattaggaggagagggctatcaatgagaggtaaactccctaattgaaaatgt 27526953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 741 - 898
Target Start/End: Original strand, 27650597 - 27650763
Alignment:
Q  741 gttttgaaaattatggtt----ttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagtta-tccattagatggagccgcctcta 835  Q
    ||||||||||||| ||||    |||| || |||||||||||||||||||||||||||||| | | ||| ||||||| ||||||||| ||||||||| |||    
T  27650597 gttttgaaaattacggttataattaatgacgacgacctaggtgcacctagtatgtgatttcggttaggtagagttactccattagacggagccgccccta 27650696  T
Q  836 tggaaaggcc---accattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    ||||||||||   ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27650697 tggaaaggccagtaccattaggaggagagggctatcaatgagatgtaaactccctaattgaaaatgt 27650763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 740 - 898
Target Start/End: Original strand, 33062575 - 33062735
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagtta-tccattagatggagccgcctctatgg 838  Q
    ||||||||||||||||||| ||| || |||||||||| |||||||||||||||||||  || ||| ||| |||  || ||||||||||||||| ||||||    
T  33062575 tgttttgaaaattatggttataatgacgacgacctagttgcacctagtatgtgatttcaattaggtagaattaccccgttagatggagccgcccctatgg 33062674  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    |||||||  ||||||||||||| ||||||| |||||| |||||||||||||||||||||||    
T  33062675 aaaggccgtcattaggaggagaaggctatcaatgagaggtaaactccctaattgaaaatgt 33062735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 765 - 898
Target Start/End: Original strand, 17355060 - 17355195
Alignment:
Q  765 atgacgacctaggtgcacctagtatgtgattttgatgagggagagtta-tccattagatggagccgcctctatggaaaggccaccattaggaggagaggg 863  Q
    |||||||||||||||||||||||||||| |||  || ||| ||||||| ||| ||||||||||||||| | |||||||||||||||||||||||||||||    
T  17355060 atgacgacctaggtgcacctagtatgtgttttcaattaggcagagttactccgttagatggagccgccccaatggaaaggccaccattaggaggagaggg 17355159  T
Q  864 ctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    ||||| |||||| ||  |||||||||||||||||||    
T  17355160 ctatcaatgagaggttcactccctaattgaaaatgt 17355195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 765 - 898
Target Start/End: Original strand, 27683674 - 27683809
Alignment:
Q  765 atgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcc-attagatggagccgcctctatggaaaggccaccattaggaggagaggg 863  Q
    |||||||||||||||||||||||||||| |||  || ||| ||||||| || |||||||||||||||| ||||||||||||| |||||||||||||||||    
T  27683674 atgacgacctaggtgcacctagtatgtgttttcaattaggtagagttaccccattagatggagccgcccctatggaaaggccgccattaggaggagaggg 27683773  T
Q  864 ctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    ||||| |||||  |||||||| ||||||||||||||    
T  27683774 ctatcaatgagtggtaaactctctaattgaaaatgt 27683809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 765 - 898
Target Start/End: Original strand, 27690995 - 27691128
Alignment:
Q  765 atgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcc-attagatggagccgcctctatggaaaggccaccattaggaggagaggg 863  Q
    |||||||||||||||||||||||||||| |||  || ||| ||||||| || |||||||||||||||| ||||||||||||| |||||||||||||||||    
T  27690995 atgacgacctaggtgcacctagtatgtgttttcaattaggtagagttaccccattagatggagccgcccctatggaaaggccgccattaggaggagaggg 27691094  T
Q  864 ctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    ||||| |||||  |||||||  ||||||||||||||    
T  27691095 ctatcaatgagtggtaaact--ctaattgaaaatgt 27691128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 766 - 898
Target Start/End: Complemental strand, 13142761 - 13142627
Alignment:
Q  766 tgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcc-attagatggagccgcctctatggaaaggccaccattaggaggagagggc 864  Q
    |||||||||||||||||||||||||||| ||  |  ||||| ||||| || |||||||||||||||| ||||||||||||| |||||||||||||| | |    
T  13142761 tgacgacctaggtgcacctagtatgtgaattcaagtagggatagttaccccattagatggagccgcccctatggaaaggccgccattaggaggagacgac 13142662  T
Q  865 tatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    |||| |||||| ||||||||| |||||||||||||    
T  13142661 tatcaatgagaggtaaactccataattgaaaatgt 13142627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 27525923 - 27526119
Alignment:
Q  8 aagttgctcattgagact-ctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatgaagattcgtttagaaattattttgt--ag 104  Q
    |||||| ||||||||||| ||| || |||||||||||||||||||| ||||||||||  |||||| ||||||  | | ||| |||||||| ||| |  ||    
T  27525923 aagttgttcattgagacttcttggaggtatatttatcaacttacaactcaattagtgcatatttagacatgattagttgtt-agaaattaattttttgag 27526021  T
Q  105 gttagaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagat 202  Q
     ||||| | |||  | | |||| ||  ||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  27526022 attagagtagattgtttggggaatttgtggttaactatagttagagaagtagtagaatgagtttctaattcatgagagaatattattgatgttcagat 27526119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 727 - 898
Target Start/End: Original strand, 28040240 - 28040413
Alignment:
Q  727 tgttttgagaatttgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatccat-tagatgga 825  Q
    ||||||||||||||  |||||||||   |||| ||| || ||||| ||||||||||||||||||||||||  || ||| ||| ||| ||   ||||||||    
T  28040240 tgttttgagaattttgtttgaaaatcc-ggttataatgacgacgatctaggtgcacctagtatgtgatttcaattaggtagaattaccccgatagatgga 28040338  T
Q  826 gccgcctctatggaaaggccaccattaggaggagagggc-tatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    |||||| ||||||||||||| ||||||||||| |||||| |||| |||||| ||||||| |||||||||||||||    
T  28040339 gccgcccctatggaaaggccgccattaggaggggagggcatatcaatgagaggtaaacttcctaattgaaaatgt 28040413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 817 - 898
Target Start/End: Original strand, 33055270 - 33055352
Alignment:
Q  817 ttagatggagccgcctctatggaaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    ||||||||||||||| |||||||| |||| |||||||||||| ||||||||| |||||| |||||||||||||||||||||||    
T  33055270 ttagatggagccgcccctatggaagggccgccattaggaggaaagggctatcaatgagaggtaaactccctaattgaaaatgt 33055352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 806 - 869
Target Start/End: Original strand, 9814555 - 9814618
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9814555 agagctatccgttagatggagccgcccctatggaaaggccaccattaggaggagagggctatca 9814618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 806 - 869
Target Start/End: Original strand, 17355224 - 17355287
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  17355224 agagctatccgttagatggagccgcccctatggaaaggccaccattaggaggagcgggctatca 17355287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 22012782 - 22012840
Alignment:
Q  144 gttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagat 202  Q
    |||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  22012782 gttaaagaagtagtagaatgagtttctaattcataagaaaatattattgatgttcagat 22012840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 13143706 - 13143638
Alignment:
Q  10 gttgctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatga 78  Q
    |||||||||||||||||||| | ||||||||||||||||||| |||||||||||  |||||| ||||||    
T  13143706 gttgctcattgagactctttaaggtatatttatcaacttacatttcaattagtgcatatttagacatga 13143638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 806 - 869
Target Start/End: Original strand, 22013712 - 22013774
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  22013712 agagctatccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatca 22013774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 806 - 869
Target Start/End: Original strand, 27526982 - 27527044
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  27526982 agagctatccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatca 27527044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 806 - 869
Target Start/End: Original strand, 27683838 - 27683900
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  27683838 agagctatccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatca 27683900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 806 - 869
Target Start/End: Original strand, 27691157 - 27691219
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  27691157 agagctatccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatca 27691219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 17354296 - 17354364
Alignment:
Q  10 gttgctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatga 78  Q
    |||||||||||||||||||| | ||||||||||||||||| | |||||||||||  |||||| ||||||    
T  17354296 gttgctcattgagactctttaaggtatatttatcaacttatatttcaattagtgcatatttagacatga 17354364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 806 - 862
Target Start/End: Original strand, 30129967 - 30130023
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagg 862  Q
    |||| ||||| |||||||||||| || ||||||||||||||||||||||||||||||    
T  30129967 agagctatccgttagatggagccacccctatggaaaggccaccattaggaggagagg 30130023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 806 - 869
Target Start/End: Original strand, 6952020 - 6952083
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| |||| ||||| ||||||||||||||||||| ||||| ||||||||||||||||    
T  6952020 agagctatccgttagctggagtcgcctctatggaaaggccatcattatgaggagagggctatca 6952083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 806 - 869
Target Start/End: Original strand, 28040442 - 28040504
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | |||||||||||||||||||||||| ||||||||||    
T  28040442 agagctatccgttagatggagccgcccc-atggaaaggccaccattaggaggaaagggctatca 28040504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 806 - 869
Target Start/End: Original strand, 33055381 - 33055443
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | ||||||||||||||||| |||||||||||||||||    
T  33055381 agagctatccgttagatggagccgcccc-atggaaaggccaccattgggaggagagggctatca 33055443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 806 - 869
Target Start/End: Original strand, 33062764 - 33062826
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| | ||||||||||||||||| |||||||||||||||||    
T  33062764 agagctatccgttagatggagccgcccc-atggaaaggccaccattgggaggagagggctatca 33062826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 365 - 445
Target Start/End: Original strand, 33062078 - 33062154
Alignment:
Q  365 acacaccctttggacatttttcttctcattgatacttatgtttaaagtcatcgatattattattatggtctctatttgaat 445  Q
    |||||||||||| || |||||||||||| |||| || |||||||||||||||||||||   |||||||||||| |||||||    
T  33062078 acacaccctttgaac-tttttcttctcaatgatgctcatgtttaaagtcatcgatatt---attatggtctctgtttgaat 33062154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 808 - 869
Target Start/End: Complemental strand, 15970826 - 15970765
Alignment:
Q  808 agttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||||||  ||||||||||||  | |||||||||| ||||||||||||||||||||||||||    
T  15970826 agttatcggttagatggagccagccctatggaaagaccaccattaggaggagagggctatca 15970765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 817 - 869
Target Start/End: Complemental strand, 13142588 - 13142536
Alignment:
Q  817 ttagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    ||||||||||||||| |  ||||||| ||||||||||||||||||||||||||    
T  13142588 ttagatggagccgccccattggaaagaccaccattaggaggagagggctatca 13142536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 833 - 896
Target Start/End: Complemental strand, 15970916 - 15970852
Alignment:
Q  833 ctatggaaaggccaccattaggaggagagggctatca-tgagatgtaaactccctaattgaaaat 896  Q
    |||||||||||||  ||||| |||||||| ||||||| ||||| |||||||||||||||||||||    
T  15970916 ctatggaaaggccgtcattaagaggagagagctatcaatgagaggtaaactccctaattgaaaat 15970852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 356 - 427
Target Start/End: Original strand, 9821699 - 9821769
Alignment:
Q  356 aaatgggacacacaccctttggacatttttcttctcattgatacttatgtttaaagtcatcgatattattat 427  Q
    |||||||  |||||||||||| || ||||||| |||| |||| || ||||||||||||||||||||||||||    
T  9821699 aaatggggaacacaccctttgaac-tttttctcctcaatgatgctcatgtttaaagtcatcgatattattat 9821769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 740 - 787
Target Start/End: Original strand, 9822206 - 9822253
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagt 787  Q
    ||||||||||||||||||| ||| || |||||||||||||||||||||    
T  9822206 tgttttgaaaattatggttataatgacgacgacctaggtgcacctagt 9822253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 25479584 - 25479526
Alignment:
Q  144 gttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagat 202  Q
    ||||||||||| ||| | |||||||||||||| | ||||||||| ||||||||||||||    
T  25479584 gttagagaagttgtatagtgagtttctaattcttaagaaaatatcattgatgttcagat 25479526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 806 - 869
Target Start/End: Complemental strand, 25478715 - 25478649
Alignment:
Q  806 agagttatccattagatggagccgcctc---tatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| |   || |||||||||||||||||| ||||||||||||||    
T  25478715 agagctatccgttagatggagccgccccatgtacggaaaggccaccattaggtggagagggctatca 25478649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 27682911 - 27682979
Alignment:
Q  10 gttgctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatga 78  Q
    |||||||||||||||| ||| | ||||||||||||||||| | |||||||| ||  |||||| ||||||    
T  27682911 gttgctcattgagactttttaaggtatatttatcaacttatatttcaattaatgcatatttagacatga 27682979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 27690232 - 27690300
Alignment:
Q  10 gttgctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatga 78  Q
    |||||||||||||||| ||| | ||||||||||||||||| | |||||||| ||  |||||| ||||||    
T  27690232 gttgctcattgagactttttaaggtatatttatcaacttatatttcaattaatgcatatttagacatga 27690300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 30230053 - 30229985
Alignment:
Q  10 gttgctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatga 78  Q
    |||||||||||||||| ||| | ||||||||||||||||| | |||||||| ||  |||||| ||||||    
T  30230053 gttgctcattgagactttttaaggtatatttatcaacttatatttcaattaatgcatatttagacatga 30229985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 427
Target Start/End: Complemental strand, 25479411 - 25479341
Alignment:
Q  356 aaatgggacacacaccctttggacatttttcttctcattgatacttatgtttaaagtcatcgatattattat 427  Q
    |||||||  |||||||| ||| || |||||||||||| || | || ||||||||||||||||||||||||||    
T  25479411 aaatggggaacacacccattgaac-tttttcttctcaatgttgctcatgtttaaagtcatcgatattattat 25479341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 623 - 695
Target Start/End: Original strand, 33062447 - 33062520
Alignment:
Q  623 tggatttga-tttggatttacttatgactacaagtggtagaatttcaattgagtttttatggtacatattttga 695  Q
    ||||||||| ||||||||||||||||| || |||| || || |||| |||||||||| ||| |||||| |||||    
T  33062447 tggatttgaatttggatttacttatgattataagtagtggattttcgattgagttttgatgatacatactttga 33062520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 93; Significance: 8e-45; HSPs: 3)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 740 - 898
Target Start/End: Original strand, 3207 - 3367
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcca-ttagatggagccgcctctatgg 838  Q
    |||||||||||||| |||| ||| || ||||||||||||||||||||||||||||||  || ||| ||| ||| ||  ||||||||||||||| ||||||    
T  3207 tgttttgaaaattacggttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagaattaccccgttagatggagccgcccctatgg 3306  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  3307 aaaggccaccattaggaggagagggctatcaatgagaggtaaactccctaattgaaaatgt 3367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 806 - 869
Target Start/End: Original strand, 3396 - 3458
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  3396 agagttatccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatca 3458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 356 - 427
Target Start/End: Original strand, 2694 - 2764
Alignment:
Q  356 aaatgggacacacaccctttggacatttttcttctcattgatacttatgtttaaagtcatcgatattattat 427  Q
    |||||||  |||||||||||| || |||||||||||| |||| || ||||||||||||||||||||||||||    
T  2694 aaatggggaacacaccctttgaac-tttttcttctcaatgatgctcatgtttaaagtcatcgatattattat 2764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 90; Significance: 5e-43; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 767 - 898
Target Start/End: Original strand, 60063 - 60196
Alignment:
Q  767 gacgacctaggtgcacctagtatgtgattttgatgagggagagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggcta 866  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  60063 gacgacctaggtgcacctagtatgtgatttcgattagggagagttacccattagatggagccgcccctatgggaaggccaccattaggaggagagggcta 60162  T
Q  867 tc-atgagatgtaaact-ccctaattgaaaatgt 898  Q
    || |||||| ||||||| ||| ||||||||||||    
T  60163 tcaatgagacgtaaactccccaaattgaaaatgt 60196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 817 - 869
Target Start/End: Original strand, 60236 - 60288
Alignment:
Q  817 ttagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  60236 ttagatggagccgcccctatggaaaggccaccattaggaggagagggctatca 60288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 811 - 869
Target Start/End: Original strand, 60393 - 60451
Alignment:
Q  811 tatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    ||||| |||||||||||||||  ||||| ||||||||| ||||||||||||||||||||    
T  60393 tatccgttagatggagccgcccttatgggaaggccacctttaggaggagagggctatca 60451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 5e-43; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 742 - 898
Target Start/End: Original strand, 22010790 - 22010946
Alignment:
Q  742 ttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatccattagatggagccgcctctatggaaa 841  Q
    ||||||||||||  ||| ||| ||||||||||||||||||||||||||||||||| ||| ||| |||||||  ||||||||||||||||| |||||||||    
T  22010790 ttttgaaaattacagttataatgatgacgacctaggtgcacctagtatgtgatttcgattagg-agagttactcattagatggagccgcccctatggaaa 22010888  T
Q  842 ggccaccattaggaggagagggctatca-tgagatgtaaactccctaattgaaaatgt 898  Q
    |||||||| | |||||||||| |||| | |||||||||||||||||||||||||||||    
T  22010889 ggccaccagttggaggagaggcctattagtgagatgtaaactccctaattgaaaatgt 22010946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 740 - 898
Target Start/End: Original strand, 28803113 - 28803273
Alignment:
Q  740 tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcca-ttagatggagccgcctctatgg 838  Q
    |||||||||||||| |||| ||| |  ||||||||||||||||||||||||||||||  || ||| ||||||| ||  ||||||||||||||| ||||||    
T  28803113 tgttttgaaaattacggttataatggcgacgacctaggtgcacctagtatgtgatttcaattaggtagagttaccccgttagatggagccgcccctatgg 28803212  T
Q  839 aaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    ||| ||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  28803213 aaaagccgccattaggaggagagggctatcaatgagaggtaaactccctaattgaaaatgt 28803273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 767 - 898
Target Start/End: Complemental strand, 44060642 - 44060509
Alignment:
Q  767 gacgacctaggtgcacctagtatgtgattttgatgagggagagttatcc-attagatggagccgcctctatggaaaggccaccattaggaggagagggct 865  Q
    ||||||||||||||||||||||||||||||  || ||| ||| ||| || |||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  44060642 gacgacctaggtgcacctagtatgtgatttcaattaggtagacttaccccattagatggagccgcccctatggaaaggccgccattaggaggagagggct 44060543  T
Q  866 atc-atgagatgtaaactccctaattgaaaatgt 898  Q
    ||| |||||| |||||||||||||||||||||||    
T  44060542 atcaatgagaggtaaactccctaattgaaaatgt 44060509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 741 - 898
Target Start/End: Complemental strand, 36265028 - 36264869
Alignment:
Q  741 gttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagttatcca-ttagatggagccgcctctatgga 839  Q
    |||||||||||||   || ||| || |||||||||||| |||||||||||||||||  || ||| ||||||| ||  |||||| |||||||| |||||||    
T  36265028 gttttgaaaattacaattataatgacgacgacctaggttcacctagtatgtgatttcaattaggtagagttaccccgttagatagagccgcccctatgga 36264929  T
Q  840 aaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    |||||| ||||||||||||||| |||||| |||||| |||||||  ||||||||||||||    
T  36264928 aaggccgccattaggaggagagtgctatcaatgagaggtaaactttctaattgaaaatgt 36264869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 34378185 - 34378269
Alignment:
Q  118 atatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagat 202  Q
    |||| ||||||  |||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  34378185 atatggggattgtatggttaaatatagttagagaagtagtagaatgagtttctaattcatgagaaaatattattgatgctcagat 34378269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 806 - 869
Target Start/End: Complemental strand, 44060480 - 44060417
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44060480 agagctatccgttagatggagccgcccctatggaaaggccaccattaggaggagagggctatca 44060417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 28802405 - 28802463
Alignment:
Q  144 gttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagat 202  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  28802405 gttagagaagtagtagaatgagtttctaattcatgagaaaatattattgatgctcagat 28802463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 806 - 869
Target Start/End: Complemental strand, 36264840 - 36264778
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||    
T  36264840 agagttatccattagatggagccgcccctatgg-aaggtcaccattaggaggagagggctatca 36264778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 6023900 - 6023844
Alignment:
Q  15 tcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttattta 71  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||    
T  6023900 tcattgagactctttgaggtatatttatcaacttacatttcaattagtgtatattta 6023844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 806 - 869
Target Start/End: Complemental strand, 36264683 - 36264620
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  36264683 agagctatccgttagatggagccgctcctatggaaaggtcaccattaggaggagagggctatca 36264620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 817 - 869
Target Start/End: Original strand, 28803313 - 28803364
Alignment:
Q  817 ttagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  28803313 ttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatca 28803364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 356 - 424
Target Start/End: Original strand, 28802619 - 28802687
Alignment:
Q  356 aaatgggacacacaccctttggacatttttcttctcattgatacttatgtttaaagtcatcgatattat 424  Q
    |||||||  |||||| ||||| |||||| || ||||||||||||||||| | |||||||| ||||||||    
T  28802619 aaatggggaacacactctttgaacatttctcctctcattgatacttatggtaaaagtcattgatattat 28802687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 86; Significance: 1e-40; HSPs: 6)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 623 - 888
Target Start/End: Complemental strand, 8426 - 8148
Alignment:
Q  623 tggatttga-tttggatttacttatgactacaagtggtagaatttcaattgagtttttatggtacatattttga-------tccgatatgttgaaaaata 714  Q
    ||||||||| ||||||||||||||||| || |||| || || ||||||||||||||| ||| ||| ||||||||       | |  |||||||  |||||    
T  8426 tggatttgaatttggatttacttatgattataagtagtggattttcaattgagttttgatgatacctattttgacataagtttccttatgttgcgaaata 8327  T
Q  715 tggtttgtgagatgt--tttgagaatt-tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagtt 811  Q
    ||||||  || ||||  ||| |||||  ||||||| |||| | |||| ||| || |||||||||||||||||||||||||||||||| | ||| ||||||    
T  8326 tggttttagacatgtgttttaagaatggtgttttgtaaatgacggttataaggacgacgacctaggtgcacctagtatgtgattttggttaggtagagtt 8227  T
Q  812 a-tccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaa 888  Q
    | ||| ||||| ||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  8226 actccgttagacggagccgcccctatggaaaggccgccattaggaggagagggctatcaatgagatgtaaactccctaa 8148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 623 - 888
Target Start/End: Complemental strand, 11407 - 11129
Alignment:
Q  623 tggatttga-tttggatttacttatgactacaagtggtagaatttcaattgagtttttatggtacatattttga-------tccgatatgttgaaaaata 714  Q
    ||||||||| ||||||||||||||||| || |||| || || ||||||||||||||| ||| ||| ||||||||       | || |||||||  |||||    
T  11407 tggatttgaatttggatttacttatgattataagtagtggattttcaattgagttttgatgatacctattttgacataagtttcgttatgttgcgaaata 11308  T
Q  715 tggtttgtgagatgt--tttgagaatt-tgttttgaaaattatggttttaacgatgacgacctaggtgcacctagtatgtgattttgatgagggagagtt 811  Q
    ||||||  || ||||  ||| |||||  ||||||| |||| | |||| ||| || ||||||||  |||||||||||||||||||||| | ||| ||||||    
T  11307 tggttttagacatgtgttttaagaatggtgttttgtaaatgacggttataaggacgacgacctgtgtgcacctagtatgtgattttggttaggtagagtt 11208  T
Q  812 a-tccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaa 888  Q
    | ||| ||| ||||||||||| ||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||    
T  11207 actccgttaaatggagccgcccctatggaaaggccgccattaggaggaaagggctatcaatgagatgtaaactccctaa 11129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 806 - 869
Target Start/End: Complemental strand, 8108 - 8045
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatca 869  Q
    |||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  8108 agagctatccgttagatggagccgcccctatggaaaggccaccatttggaggagagggctatca 8045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 806 - 859
Target Start/End: Complemental strand, 11089 - 11036
Alignment:
Q  806 agagttatccattagatggagccgcctctatggaaaggccaccattaggaggag 859  Q
    |||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||    
T  11089 agagctatccgttagatggagccgcccctatggaaaggccaccatttggaggag 11036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 365 - 427
Target Start/End: Complemental strand, 8750 - 8689
Alignment:
Q  365 acacaccctttggacatttttcttctcattgatacttatgtttaaagtcatcgatattattat 427  Q
    |||||||||||| ||||||| ||| ||||||||| ||||||||||||||||| ||| ||||||    
T  8750 acacaccctttgaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactattat 8689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 356 - 426
Target Start/End: Complemental strand, 11740 - 11672
Alignment:
Q  356 aaatgggacacacaccctttggacatttttcttctcattgatacttatgtttaaagtcatcgatattatta 426  Q
    |||||||| |||||||||||| ||||||| ||| ||||||||| ||||||||||||||||| ||| |||||    
T  11740 aaatggga-acacaccctttgaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactatta 11672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 61; Significance: 1e-25; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 768 - 898
Target Start/End: Complemental strand, 413513 - 413381
Alignment:
Q  768 acgacctaggtgcacctagtatgtgattttgatgagggagagttat-ccattagatggagccgcctctatggaaaggccaccattaggaggagagggcta 866  Q
    ||||||||||  |||||||||| |||||||| | ||| |||||||| || ||||||||||||||| |||||||||| || ||||||||||||||||||||    
T  413513 acgacctaggcacacctagtatttgattttggttaggtagagttattccgttagatggagccgcccctatggaaagaccgccattaggaggagagggcta 413414  T
Q  867 tc-atgagatgtaaactccctaattgaaaatgt 898  Q
    || |  | |||||||||| ||||||||||||||    
T  413413 tcaaacaaatgtaaactctctaattgaaaatgt 413381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 767 - 898
Target Start/End: Complemental strand, 424896 - 424763
Alignment:
Q  767 gacgacctaggtgcacctagtatgtgattttgatgagggagagttat-ccattagatggagccgcctctatggaaaggccaccattaggaggagagggct 865  Q
    |||||||||||  || ||||||| |||||| | | ||| |||||||| ||  |||||||||||||| ||||||||||||| |||||||| |||||| |||    
T  424896 gacgacctaggcacatctagtatttgatttcggttaggtagagttattccgatagatggagccgcccctatggaaaggccgccattaggtggagagagct 424797  T
Q  866 atc-atgagatgtaaactccctaattgaaaatgt 898  Q
    ||| |  |||||||||||| ||||||||||||||    
T  424796 atcaaacagatgtaaactctctaattgaaaatgt 424763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 813 - 898
Target Start/End: Complemental strand, 407417 - 407331
Alignment:
Q  813 tccattagatggagccgcctctatggaaaggccaccattaggaggagagggctatc-atgagatgtaaactccctaattgaaaatgt 898  Q
    |||| |||||| | ||||| ||||||||||||| |||||||| |||||| |||||| |  |||||||||||| ||||||||||||||    
T  407417 tccaatagatgaaaccgcccctatggaaaggccgccattaggtggagagagctatcaaacagatgtaaactctctaattgaaaatgt 407331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 633 - 695
Target Start/End: Complemental strand, 413640 - 413580
Alignment:
Q  633 ttggatttacttatgactacaagtggtagaatttcaattgagtttttatggtacatattttga 695  Q
    |||||||||||||||| ||  ||| ||||| ||||||||||||||| ||||||||||||||||    
T  413640 ttggatttacttatgatta--agtagtagattttcaattgagttttgatggtacatattttga 413580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2168 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold2168
Description:

Target: scaffold2168; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 10 - 68
Alignment:
Q  144 gttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgttcagat 202  Q
    |||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  10 gttaaagaagtagtagaatgagtttctaattcataagaaaatattattgatgttcagat 68  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 195
Target Start/End: Complemental strand, 33002 - 32893
Alignment:
Q  85 gtttagaaattattttgtaggttagaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaa 184  Q
    ||||||||||||||||  |||| | ||| ||||| || ||||||| ||  ||| || ||||||||||||| ||||| ||||||||||| || |||  |||    
T  33002 gtttagaaattattttagaggtaataatagataaaattgggattttataatta-ctatagttagagaagttgtagagtgagtttctaaatcttgactaaa 32904  T
Q  185 tattattgatg 195  Q
    |||||||||||    
T  32903 tattattgatg 32893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 630 - 695
Target Start/End: Complemental strand, 4448 - 4383
Alignment:
Q  630 gatttggatttacttatgactacaagtggtagaatttcaattgagtttttatggtacatattttga 695  Q
    ||||||||||||||||||| || |||| ||| | |||||||||| |||| ||| ||||||||||||    
T  4448 gatttggatttacttatgattataagtagtaaattttcaattgacttttgatgatacatattttga 4383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 630 - 695
Target Start/End: Complemental strand, 5802 - 5737
Alignment:
Q  630 gatttggatttacttatgactacaagtggtagaatttcaattgagtttttatggtacatattttga 695  Q
    ||||||||||||||||||| || |||| ||| | |||||||||| |||| ||| ||||||||||||    
T  5802 gatttggatttacttatgattataagtagtaaattttcaattgacttttgatgatacatattttga 5737  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 631 - 693
Target Start/End: Complemental strand, 115751 - 115689
Alignment:
Q  631 atttggatttacttatgactacaagtggtagaatttcaattgagtttttatggtacatatttt 693  Q
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T  115751 atttggatttacttatgattataagtagtaaattttcaattgagttttgatgatacctatttt 115689  T

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